def run_chain_get_element_abund(moogfile, element):
run_path = 'running_dir/'
save_path = 'save_folder/'
teff, logg, feh, vtur = isp.read_parameters_moogfile(moogfile)
linelist_element = rp.get_install_dir()+rc.read_config_param('linelists', element+'_abund').replace("'", "")
rp.ares_make_mine_opt(run_path, linelist_element)
rp.run_ares(run_path)
filename_ares = rc.read_config_param('ares', 'fileout').replace("'", "")
filename_out = 'lines.' + filename_ares
isp.ares_to_lines(run_path+filename_ares, linelist_element, run_path+filename_out, 4000, 9999, 5, 150)
rp.create_abfind_par(run_path, filename_out)
rp.create_model_kurucz(run_path, teff, logg, feh, vtur)
rp.run_MOOG(run_path, 'abfind.par')
(ele1, ele1_sig, nele1, ele2, ele2_sig, nele2) = rmoog.read_moog_ele_sigma(run_path+'abund_plan_tspec.test', element, 2.)
return (ele1, ele1_sig, nele1, ele2, ele2_sig, nele2)
def run_moog_kurucz(teff, logg, metal, vtur):
rp.create_model_kurucz('./', teff, logg, metal, vtur)
rp.run_MOOG('./', 'abfind.par')
def recalibrate_loggf_kurucz(path, filein, fileout):
"""
Differential recalibration of loggf using the KURUCZ models
"""
rp.create_model_kurucz(path, 5777, 4.44, 0.0, 1.0)
recalibrate_loggf(path, filein, fileout)
