def generate_spectralcluster_alignment_score(subgraphpath1, subgraphpath2, clusterAlgoName, distAlgoName,
ways_type,dataset_type, family_type, hyper_param, file_num):
SCORE_DIR = os.path.join("../../Data", clusterAlgoName, Constants.FINAL_SCORE_DIR, distAlgoName,"A_B")
if not os.path.exists(SCORE_DIR):
os.makedirs(SCORE_DIR)
RESULT_LOG_DIR = os.path.join("../..", Constants.FINAL_RESULT, "SpectralC" , ways_type+"_"+dataset_type+"_"+family_type+"_"+
"_Par_" +str(hyper_param))
RESULT_LOG_FILE = os.path.join(RESULT_LOG_DIR,"A_B_"+str(file_num)+".txt")
if not os.path.exists(RESULT_LOG_DIR):
os.makedirs(RESULT_LOG_DIR)
cfg_file = Utils.generateCfgFile (subgraphpath1, subgraphpath2, dumpDistances=False, dumpSignatures=False,
sigs1=None, sigs2=None)
cmd = Constants.GHOST_PATH + " -c "+ cfg_file + " | tee "+ RESULT_LOG_FILE
os.system(cmd)
subprocess.call("mv *sdf "+SCORE_DIR, shell=True)
subprocess.call("mv *gz "+SCORE_DIR, shell=True)
subprocess.call("mv *af "+SCORE_DIR, shell=True)
pass
def generatekmeansFinalScore(networkPath1, networkPath2,ways_type,dataset_type, family_type, hyper_param ):
SCORE_DIR = os.path.join("../../Data", "KmeansH", Constants.FINAL_SCORE_DIR, "SDF","A_B")
#Check whether gexf file exists or not
graph1Path = networkPath1 + Constants.GEXF_FORMAT
graph2Path = networkPath2 + Constants.GEXF_FORMAT
if os.path.isfile(graph1Path) is False:
Utils.convertNetToGefx(networkPath1 + Constants.NET_FORMAT)
if os.path.isfile(graph2Path) is False:
Utils.convertNetToGefx(networkPath2 + Constants.NET_FORMAT)
RESULT_LOG_DIR = os.path.join("../..", Constants.FINAL_RESULT, "KmeansH" , ways_type+"_"+dataset_type+"_"+family_type+"_"+
"_Par_" +str(hyper_param))
#Generate Prof score
RESULT_LOG_FILE = os.path.join(RESULT_LOG_DIR, Constants.PROF+"_"+Constants.RESULT_LOG_FILE)
cfg_file = Utils.generateCfgFile (graph1Path, graph2Path, dumpDistances=False, dumpSignatures=False,
sigs1=None, sigs2=None)
cmd = Constants.GHOST_PATH + " -c "+ cfg_file + " | tee "+ RESULT_LOG_FILE
os.system(cmd)
subprocess.call("rm *sdf "+SCORE_DIR, shell=True)
subprocess.call("rm *gz "+SCORE_DIR, shell=True)
subprocess.call("rm *af "+SCORE_DIR, shell=True)
#Generate our Final score
#Concatenate various af
final_text = ""
FINAL_SCORE_DIR = os.path.join(SCORE_DIR,Constants.FINAL_RESULT)
if not os.path.exists(FINAL_SCORE_DIR):
os.makedirs(FINAL_SCORE_DIR)
for file in os.listdir(SCORE_DIR):
if file.endswith(".af"):
read_file = open(os.path.join(SCORE_DIR,file))
final_text = final_text + read_file.read()
final_align_file_path = os.path.join(FINAL_SCORE_DIR,Constants.RESULT_FILE)
write_file = open(final_align_file_path, 'w+')
write_file.write(final_text)
RESULT_LOG_FILE = os.path.join(RESULT_LOG_DIR, Constants.OURS+"_"+Constants.RESULT_LOG_FILE)
Utils.getEdgeCorrectness(graph1Path, graph2Path, final_align_file_path, RESULT_LOG_FILE)
subprocess.call("rm *sdf "+SCORE_DIR, shell=True)
subprocess.call("rm *gz "+SCORE_DIR, shell=True)
subprocess.call("rm *af "+SCORE_DIR, shell=True)
def generate_alignment_score(best_cluster_pairs,clusterAlgoName, distAlgoName, networkPath1, networkPath2, networkName1, networkName2,
ways_type,dataset_type, family_type, hyper_param):
SCORE_DIR = os.path.join("../../Data", clusterAlgoName, Constants.FINAL_SCORE_DIR, distAlgoName, networkName1+"_"+networkName2)
if not os.path.exists(SCORE_DIR):
os.makedirs(SCORE_DIR)
RESULT_LOG_DIR = os.path.join("../..", Constants.FINAL_RESULT, clusterAlgoName , ways_type+"_"+dataset_type+"_"+family_type+"_"+
"_Par_" +str(hyper_param))
if not os.path.exists(RESULT_LOG_DIR):
os.makedirs(RESULT_LOG_DIR)
for cluster1,cluster2 in best_cluster_pairs:
RESULT_LOG_FILE = os.path.join(RESULT_LOG_DIR, str(cluster1)+"_"+str(cluster2)+"_"+Constants.RESULT_LOG_FILE)
subgraph1Path = os.path.join("../../Data", clusterAlgoName, networkName1, networkName1+str(cluster1) + Constants.GEXF_FORMAT)
subgraph2Path = os.path.join("../../Data", clusterAlgoName, networkName2, networkName2+str(cluster2) + Constants.GEXF_FORMAT)
print subgraph1Path, '-'*10
print subgraph2Path, '-'*10
cfg_file = Utils.generateCfgFile (subgraph1Path, subgraph2Path, dumpDistances=False, dumpSignatures=False,
sigs1=None, sigs2=None)
#subprocess.call([Constants.GHOST_PATH, "-c", cfg_file, "|","tee",RESULT_LOG_FILE])
cmd = Constants.GHOST_PATH + " -c "+ cfg_file + " | tee "+ RESULT_LOG_FILE
os.system(cmd)
subprocess.call("mv *sdf "+SCORE_DIR, shell=True)
subprocess.call("mv *gz "+SCORE_DIR, shell=True)
subprocess.call("mv *af "+SCORE_DIR, shell=True)
pass
#Concatenate different cluster mapping into one
FINAL_SCORE_DIR = os.path.join(SCORE_DIR,Constants.FINAL_RESULT)
if not os.path.exists(FINAL_SCORE_DIR):
os.makedirs(FINAL_SCORE_DIR)
final_text = ""
for file in os.listdir(SCORE_DIR):
if file.endswith(".af"):
read_file = open(os.path.join(SCORE_DIR,file))
final_text = final_text + read_file.read()
final_align_file_path = os.path.join(FINAL_SCORE_DIR,Constants.RESULT_FILE)
write_file = open(final_align_file_path, 'w+')
write_file.write(final_text)
#Check whether gexf file exists or not
graph1Path = networkPath1 + Constants.GEXF_FORMAT
graph2Path = networkPath2 + Constants.GEXF_FORMAT
if os.path.isfile(graph1Path) is False:
Utils.convertNetToGefx(networkPath1 + Constants.NET_FORMAT)
if os.path.isfile(graph2Path) is False:
Utils.convertNetToGefx(networkPath2 + Constants.NET_FORMAT)
#Generate Prof score
RESULT_LOG_FILE = os.path.join(RESULT_LOG_DIR, Constants.PROF+"_"+Constants.RESULT_LOG_FILE)
cfg_file = Utils.generateCfgFile (graph1Path, graph2Path, dumpDistances=False, dumpSignatures=False,
sigs1=None, sigs2=None)
cmd = Constants.GHOST_PATH + " -c "+ cfg_file + " | tee "+ RESULT_LOG_FILE
os.system(cmd)
subprocess.call("rm *sdf "+SCORE_DIR, shell=True)
subprocess.call("rm *gz "+SCORE_DIR, shell=True)
subprocess.call("rm *af "+SCORE_DIR, shell=True)
#Generate our Final score
RESULT_LOG_FILE = os.path.join(RESULT_LOG_DIR, Constants.OURS+"_"+Constants.RESULT_LOG_FILE)
Utils.getEdgeCorrectness(graph1Path, graph2Path, final_align_file_path, RESULT_LOG_FILE)
subprocess.call("rm *sdf "+SCORE_DIR, shell=True)
subprocess.call("rm *gz "+SCORE_DIR, shell=True)
subprocess.call("rm *af "+SCORE_DIR, shell=True)
