def __add_aggregation_controls(self):
def new_inbox():
nonlocal row, col, inbox
inbox = QWidget()
layout = QGridLayout()
inbox.setLayout(layout)
layout.setContentsMargins(0, 0, 0, 0)
box.layout().addWidget(inbox)
row = col = 0
box = gui.vBox(self.controlArea, "Aggregations")
row = col = 0
inbox = None
new_inbox()
self.aggregation_checkboxes = [] # for test purposes
for agg in self.AGGREGATIONS:
if agg is None:
line = QFrame()
line.setFrameShape(QFrame.HLine)
line.setLineWidth(1)
line.setFrameShadow(QFrame.Sunken)
box.layout().addWidget(line)
new_inbox()
continue
elif agg == 2:
col += 1
row = 0
continue
check_box = QCheckBox(str(agg), inbox)
check_box.setChecked(agg in self.sel_agg_functions)
check_box.clicked.connect(
lambda *args, a=agg: self.__aggregation_cb_clicked(a, args[0]))
inbox.layout().addWidget(check_box, row, col)
self.aggregation_checkboxes.append(check_box)
row += 1
def add_line(parent):
frame = QFrame()
frame.setFrameShape(QFrame.HLine)
frame.setFrameShadow(QFrame.Sunken)
parent.layout().addSpacing(6)
parent.layout().addWidget(frame)
parent.layout().addSpacing(6)
def __add_aggregation_controls(self):
box = gui.vBox(self.controlArea, "Aggregations")
for agg in self.AGGREGATIONS:
if agg is None:
gui.separator(box, height=1)
line = QFrame()
line.setFrameShape(QFrame.HLine)
line.setLineWidth(1)
line.setFrameShadow(QFrame.Sunken)
box.layout().addWidget(line)
continue
check_box = QCheckBox(str(agg), box)
check_box.setChecked(agg in self.sel_agg_functions)
check_box.clicked.connect(
lambda *args, a=agg: self.__aggregation_cb_clicked(a, args[0]))
box.layout().addWidget(check_box)
def __add_aggregation_controls(self):
box = gui.vBox(self.controlArea, "聚合")
chinese_aggs = [
"计数(Count)", "计数已定义项(Count_defined)", None, "总和(Sum)", "平均(Mean)",
"样式(Mode)", "最小(Min)", "最大(Max)", "中位数(Median)", "变量(Var)", None,
"大多数(Majority)"
]
for agg, chinese_agg in zip(self.AGGREGATIONS, chinese_aggs):
if agg is None:
gui.separator(box, height=1)
line = QFrame()
line.setFrameShape(QFrame.HLine)
line.setLineWidth(1)
line.setFrameShadow(QFrame.Sunken)
box.layout().addWidget(line)
continue
check_box = QCheckBox(str(chinese_agg), box)
check_box.setChecked(agg in self.sel_agg_functions)
check_box.clicked.connect(
lambda *args, a=agg: self.__aggregation_cb_clicked(a, args[0]))
box.layout().addWidget(check_box)
def __init__(self):
super().__init__()
self.output_corpus = None
self.pubmed_api = None
self.progress = None
self.email_is_valid = False
self.record_count = 0
self.download_running = False
# To hold all the controls. Makes access easier.
self.pubmed_controls = []
h_box = gui.hBox(self.controlArea)
label = gui.label(h_box, self, 'Email:')
label.setMaximumSize(label.sizeHint())
# Drop-down for recent emails.
self.email_combo = QComboBox(h_box)
self.email_combo.setMinimumWidth(150)
self.email_combo.setEditable(True)
self.email_combo.lineEdit().textChanged.connect(self.sync_email)
h_box.layout().addWidget(self.email_combo)
self.email_combo.activated[int].connect(self.select_email)
# RECORD SEARCH
self.search_tabs = gui.tabWidget(self.controlArea)
# --- Regular search ---
regular_search_box = gui.widgetBox(self.controlArea, addSpace=True)
# Author
self.author_input = gui.lineEdit(regular_search_box,
self,
'author',
'Author:',
orientation=Qt.Horizontal)
self.pubmed_controls.append(self.author_input)
h_box = gui.hBox(regular_search_box)
year_box = gui.widgetBox(h_box, orientation=Qt.Horizontal)
min_date = QDate.fromString(
self.MIN_DATE.strftime(self.PY_DATE_FORMAT), self.QT_DATE_FORMAT)
if not self.pub_date_from:
self.pub_date_from = self.MIN_DATE.strftime(self.PY_DATE_FORMAT)
if not self.pub_date_to:
self.pub_date_to = date.today().strftime(self.PY_DATE_FORMAT)
self.date_from = QDateEdit(QDate.fromString(self.pub_date_from,
self.QT_DATE_FORMAT),
displayFormat=self.QT_DATE_FORMAT,
minimumDate=min_date,
calendarPopup=True)
self.date_to = QDateEdit(QDate.fromString(self.pub_date_to,
self.QT_DATE_FORMAT),
displayFormat=self.QT_DATE_FORMAT,
minimumDate=min_date,
calendarPopup=True)
self.date_from.dateChanged.connect(lambda date: setattr(
self, 'pub_date_from', date.toString(self.QT_DATE_FORMAT)))
self.date_to.dateChanged.connect(lambda date: setattr(
self, 'pub_date_to', date.toString(self.QT_DATE_FORMAT)))
self.pubmed_controls.append(self.date_from)
self.pubmed_controls.append(self.date_to)
gui.label(year_box, self, 'From:')
year_box.layout().addWidget(self.date_from)
gui.label(year_box, self, 'to:')
year_box.layout().addWidget(self.date_to)
# Keywords.
h_box = gui.hBox(regular_search_box)
label = gui.label(h_box, self, 'Query:')
label.setMaximumSize(label.sizeHint())
self.keyword_combo = QComboBox(h_box)
self.keyword_combo.setMinimumWidth(150)
self.keyword_combo.setEditable(True)
h_box.layout().addWidget(self.keyword_combo)
self.keyword_combo.activated[int].connect(self.select_keywords)
self.pubmed_controls.append(self.keyword_combo)
tab_height = regular_search_box.sizeHint()
regular_search_box.setMaximumSize(tab_height)
# --- Advanced search ---
advanced_search_box = gui.widgetBox(self.controlArea, addSpace=True)
# Advanced search query.
h_box = gui.hBox(advanced_search_box)
self.advanced_query_input = QTextEdit(h_box)
h_box.layout().addWidget(self.advanced_query_input)
self.advanced_query_input.setMaximumSize(tab_height)
self.pubmed_controls.append(self.advanced_query_input)
gui.createTabPage(self.search_tabs, 'Regular search',
regular_search_box)
gui.createTabPage(self.search_tabs, 'Advanced search',
advanced_search_box)
# Search info label.
self.search_info_label = gui.label(self.controlArea, self,
'Number of records found: /')
# Search for records button.
self.run_search_button = gui.button(
self.controlArea,
self,
'Find records',
callback=self.run_search,
tooltip='Performs a search for articles that fit the '
'specified parameters.')
self.pubmed_controls.append(self.run_search_button)
h_line = QFrame()
h_line.setFrameShape(QFrame.HLine)
h_line.setFrameShadow(QFrame.Sunken)
self.controlArea.layout().addWidget(h_line)
# RECORD RETRIEVAL
# Text includes box.
text_includes_box = gui.widgetBox(self.controlArea,
'Text includes',
addSpace=True)
self.authors_checkbox = gui.checkBox(text_includes_box, self,
'includes_authors', 'Authors')
self.title_checkbox = gui.checkBox(text_includes_box, self,
'includes_title', 'Article title')
self.mesh_checkbox = gui.checkBox(text_includes_box, self,
'includes_mesh', 'Mesh headings')
self.abstract_checkbox = gui.checkBox(text_includes_box, self,
'includes_abstract', 'Abstract')
self.url_checkbox = gui.checkBox(text_includes_box, self,
'includes_url', 'URL')
self.pubmed_controls.append(self.authors_checkbox)
self.pubmed_controls.append(self.title_checkbox)
self.pubmed_controls.append(self.mesh_checkbox)
self.pubmed_controls.append(self.abstract_checkbox)
self.pubmed_controls.append(self.url_checkbox)
# Num. records.
h_box = gui.hBox(self.controlArea)
label = gui.label(h_box, self, 'Retrieve')
label.setMaximumSize(label.sizeHint())
self.num_records_input = gui.spin(h_box,
self,
'num_records',
minv=1,
maxv=10000)
self.max_records_label = gui.label(h_box, self, 'records from /.')
self.max_records_label.setMaximumSize(
self.max_records_label.sizeHint())
self.pubmed_controls.append(self.num_records_input)
# Download articles.
# Search for records button.
self.retrieve_records_button = gui.button(
self.controlArea,
self,
'Retrieve records',
callback=self.retrieve_records,
tooltip='Retrieves the specified documents.')
self.pubmed_controls.append(self.retrieve_records_button)
# Num. retrieved records info label.
self.retrieval_info_label = gui.label(
self.controlArea, self, 'Number of records retrieved: /')
# Load the most recent emails.
self.set_email_list()
# Load the most recent queries.
self.set_keyword_list()
# Check the email and enable controls accordingly.
if self.recent_emails:
email = self.recent_emails[0]
self.email_is_valid = validate_email(email)
self.enable_controls()
def h_line():
line = QFrame()
line.setFrameShape(QFrame.HLine)
line.setFrameShadow(QFrame.Sunken)
return line
def __init__(self):
super().__init__()
self.output_corpus = None
self.pubmed_api = None
self.progress = None
self.email_is_valid = False
self.record_count = 0
self.download_running = False
# To hold all the controls. Makes access easier.
self.pubmed_controls = []
h_box = gui.hBox(self.controlArea)
label = gui.label(h_box, self, 'Email:')
label.setMaximumSize(label.sizeHint())
# Drop-down for recent emails.
self.email_combo = QComboBox(h_box)
self.email_combo.setMinimumWidth(150)
self.email_combo.setEditable(True)
self.email_combo.lineEdit().textChanged.connect(self.sync_email)
h_box.layout().addWidget(self.email_combo)
self.email_combo.activated[int].connect(self.select_email)
# RECORD SEARCH
self.search_tabs = gui.tabWidget(self.controlArea)
# --- Regular search ---
regular_search_box = gui.widgetBox(self.controlArea, addSpace=True)
# Author
self.author_input = gui.lineEdit(regular_search_box, self, 'author',
'Author:', orientation=Qt.Horizontal)
self.pubmed_controls.append(self.author_input)
h_box = gui.hBox(regular_search_box)
year_box = gui.widgetBox(h_box, orientation=Qt.Horizontal)
min_date = QDate.fromString(
self.MIN_DATE.strftime(self.PY_DATE_FORMAT),
self.QT_DATE_FORMAT
)
if not self.pub_date_from:
self.pub_date_from = self.MIN_DATE.strftime(self.PY_DATE_FORMAT)
if not self.pub_date_to:
self.pub_date_to = date.today().strftime(self.PY_DATE_FORMAT)
self.date_from = QDateEdit(
QDate.fromString(self.pub_date_from, self.QT_DATE_FORMAT),
displayFormat=self.QT_DATE_FORMAT,
minimumDate=min_date,
calendarPopup=True
)
self.date_to = QDateEdit(
QDate.fromString(self.pub_date_to, self.QT_DATE_FORMAT),
displayFormat=self.QT_DATE_FORMAT,
minimumDate=min_date,
calendarPopup=True
)
self.date_from.dateChanged.connect(
lambda date: setattr(self, 'pub_date_from',
date.toString(self.QT_DATE_FORMAT)))
self.date_to.dateChanged.connect(
lambda date: setattr(self, 'pub_date_to',
date.toString(self.QT_DATE_FORMAT)))
self.pubmed_controls.append(self.date_from)
self.pubmed_controls.append(self.date_to)
gui.label(year_box, self, 'From:')
year_box.layout().addWidget(self.date_from)
gui.label(year_box, self, 'to:')
year_box.layout().addWidget(self.date_to)
# Keywords.
h_box = gui.hBox(regular_search_box)
label = gui.label(h_box, self, 'Query:')
label.setMaximumSize(label.sizeHint())
self.keyword_combo = QComboBox(h_box)
self.keyword_combo.setMinimumWidth(150)
self.keyword_combo.setEditable(True)
h_box.layout().addWidget(self.keyword_combo)
self.keyword_combo.activated[int].connect(self.select_keywords)
self.pubmed_controls.append(self.keyword_combo)
tab_height = regular_search_box.sizeHint()
regular_search_box.setMaximumSize(tab_height)
# --- Advanced search ---
advanced_search_box = gui.widgetBox(self.controlArea, addSpace=True)
# Advanced search query.
h_box = gui.hBox(advanced_search_box)
self.advanced_query_input = QTextEdit(h_box)
h_box.layout().addWidget(self.advanced_query_input)
self.advanced_query_input.setMaximumSize(tab_height)
self.pubmed_controls.append(self.advanced_query_input)
gui.createTabPage(self.search_tabs, 'Regular search',
regular_search_box)
gui.createTabPage(self.search_tabs, 'Advanced search',
advanced_search_box)
# Search info label.
self.search_info_label = gui.label(
self.controlArea, self,
'Number of records found: /')
# Search for records button.
self.run_search_button = gui.button(
self.controlArea,
self,
'Find records',
callback=self.run_search,
tooltip='Performs a search for articles that fit the '
'specified parameters.')
self.pubmed_controls.append(self.run_search_button)
h_line = QFrame()
h_line.setFrameShape(QFrame.HLine)
h_line.setFrameShadow(QFrame.Sunken)
self.controlArea.layout().addWidget(h_line)
# RECORD RETRIEVAL
# Text includes box.
text_includes_box = gui.widgetBox(self.controlArea,
'Text includes', addSpace=True)
self.authors_checkbox = gui.checkBox(text_includes_box, self,
'includes_authors', 'Authors')
self.title_checkbox = gui.checkBox(text_includes_box, self,
'includes_title', 'Article title')
self.mesh_checkbox = gui.checkBox(text_includes_box, self,
'includes_mesh', 'Mesh headings')
self.abstract_checkbox = gui.checkBox(text_includes_box, self,
'includes_abstract', 'Abstract')
self.url_checkbox = gui.checkBox(text_includes_box, self,
'includes_url', 'URL')
self.pubmed_controls.append(self.authors_checkbox)
self.pubmed_controls.append(self.title_checkbox)
self.pubmed_controls.append(self.mesh_checkbox)
self.pubmed_controls.append(self.abstract_checkbox)
self.pubmed_controls.append(self.url_checkbox)
# Num. records.
h_box = gui.hBox(self.controlArea)
label = gui.label(h_box, self, 'Retrieve')
label.setMaximumSize(label.sizeHint())
self.num_records_input = gui.spin(h_box, self, 'num_records',
minv=1, maxv=100000)
self.max_records_label = gui.label(h_box, self, 'records from /.')
self.max_records_label.setMaximumSize(self.max_records_label
.sizeHint())
self.pubmed_controls.append(self.num_records_input)
# Download articles.
# Search for records button.
self.retrieve_records_button = gui.button(
self.controlArea,
self,
'Retrieve records',
callback=self.retrieve_records,
tooltip='Retrieves the specified documents.')
self.pubmed_controls.append(self.retrieve_records_button)
# Num. retrieved records info label.
self.retrieval_info_label = gui.label(
self.controlArea,
self,
'Number of records retrieved: /')
# Load the most recent emails.
self.set_email_list()
# Load the most recent queries.
self.set_keyword_list()
# Check the email and enable controls accordingly.
if self.recent_emails:
email = self.recent_emails[0]
self.email_is_valid = validate_email(email)
self.enable_controls()
