def test_write_read(self):
handle = StringIO(phylip_text5a)
list5 = list(PhylipIterator(handle))
handle.close()
handle = StringIO()
PhylipWriter(handle).write_file(list5)
handle.seek(0)
list6 = list(PhylipIterator(handle))
self.assertEqual(len(list5), len(list6))
for a1, a2 in zip(list5, list6):
self.assertEqual(len(a1), len(a2))
for r1, r2 in zip(a1, a2):
self.assertEqual(r1.id, r2.id)
self.assertEqual(str(r1.seq), str(r2.seq))
def test_write_read(self):
path = "Phylip/six.dat"
with open(path) as handle:
list5 = list(PhylipIterator(handle))
handle = StringIO()
PhylipWriter(handle).write_file(list5)
handle.seek(0)
list6 = list(PhylipIterator(handle))
self.assertEqual(len(list5), len(list6))
for a1, a2 in zip(list5, list6):
self.assertEqual(len(a1), len(a2))
for r1, r2 in zip(a1, a2):
self.assertEqual(r1.id, r2.id)
self.assertEqual(r1.seq, r2.seq)
