def cobalt_query(state):
cqm = ComponentProxy('queue-manager', defer=True)
scheduler = ComponentProxy('scheduler', defer=True)
if state not in ('running', 'queued', 'reservation'):
return None
# Templates for queries to coblat
query_job = dict.fromkeys(job_query_fields, '*')
query_res = dict.fromkeys(reservation_query_fields, '*')
if state == 'reservation':
return scheduler.get_reservations([query_res])
if state == 'running' or state == 'starting':
query_job['state'] = 'running'
query_job['location'] = '*'
if state == 'queued':
query_job['state'] = 'queued'
query_job['score'] = '*'
return cqm.get_jobs([query_job])
cqm = ComponentProxy("queue-manager", defer=False)
except ComponentLookupError:
print >> sys.stderr, "Failed to connect to queue manager"
sys.exit(1)
for i in range(len(args)):
if args[i] == '*':
continue
try:
args[i] = int(args[i])
except:
logger.error("jobid must be an integer")
raise SystemExit, 1
if opts['start']:
query = [{
'tag': 'job',
'jobid': jid,
'is_active': False,
'has_completed': False
} for jid in args]
else:
query = [{'tag': 'job', 'jobid': jid} for jid in args]
while True:
response = cqm.get_jobs(query)
if len(response) == 0:
raise SystemExit, 0
else:
time.sleep(2)
query.append({'tag':'job', 'jobid':int(n), 'queue':'*'})
except ValueError:
print "%s is not a valid jobid or queue name" % n
sys.exit(2)
for q in query:
for h in long_header:
if h == 'JobName':
q.update({'outputpath':'*'})
elif h not in ['JobID', 'Queue']:
q.update({h.lower():'*'})
if h in query_dependencies.keys():
for x in query_dependencies[h]:
if x not in header:
q.update({x.lower():'*'})
q["user"] = user_name
response = cqm.get_jobs(query)
if len(args) and not response:
sys.exit(1)
if opts['Q']:
for q in response:
if q['maxtime'] is not None:
q['maxtime'] = "%02d:%02d:00" % (divmod(int(q['maxtime']), 60))
if q['mintime'] is not None:
q['mintime'] = "%02d:%02d:00" % (divmod(int(q['mintime']), 60))
output = [[q[x] for x in [y.lower() for y in header]] for q in response]
else:
if response:
maxjoblen = max([len(str(item.get('jobid'))) for item in response])
jobidfmt = "%%%ss" % maxjoblen
try:
pm = ComponentProxy("process-manager", defer=False)
except ComponentLookupError:
print >> sys.stderr, "Failed to connect to process manager"
sys.exit(1)
r = pm.add_jobs([{
'tag': 'process-group',
'user': user,
'args': [],
'env': {},
'executable': '/tmp/testscript',
'size': 700,
'cwd': '/tmp',
'location': ['ANLR00'],
'outputfile': '/tmp/test1-output',
'errorfile': '/tmp/test1-error',
'id': '*'
}])
print "jobs : " + ` len(r) `
pgid = r[0]['id']
while True:
r = pm.get_jobs([{'tag': 'process-group', 'id': pgid, 'state': '*'}])
state = r[0]['state']
if state == 'running':
time.sleep(5)
continue
else:
break
print "process group %s has completed" % (pgid)
try:
args[i] = int(args[i])
all_jobs.add(args[i])
except:
logger.error("jobid must be an integer")
raise SystemExit, 1
check_specs = [{
'tag': 'job',
'user': user,
'jobid': jobid,
'user_hold': '*'
} for jobid in args]
try:
check_response = cqm.get_jobs(check_specs)
except xmlrpclib.Fault, flt:
print flt.faultString
raise SystemExit, 1
jobs_existed = [j.get('jobid') for j in check_response]
all_jobs = all_jobs.union(set(jobs_existed))
update_specs = [{
'tag': 'job',
'user': user,
'jobid': jobid,
'user_hold': "*",
'is_active': "*"
} for jobid in jobs_existed]
updates = {'user_hold': True}
try:
args[i] = int(args[i])
except:
logger.error("jobid must be an integer")
raise SystemExit, 1
spec = [{'tag':'job', 'user':user, 'jobid':jobid, 'project':'*', 'notify':'*',
'walltime':'*', 'queue':'*', 'procs':'*', 'nodes':'*'} for jobid in args]
try:
filters = CP.get('cqm', 'filters').split(':')
except ConfigParser.NoOptionError:
filters = []
try:
jobdata = cqm.get_jobs(spec)
except xmlrpclib.Fault, flt:
print flt.faultString
raise SystemExit, 1
if not jobdata:
print "Failed to match any jobs"
sys.exit(1)
response = []
for jobinfo in jobdata:
original_spec = jobinfo.copy()
jobinfo.update({'queue': queue})
for filt in filters:
Cobalt.Util.processfilter(filt, jobinfo)
try:
from Cobalt.Exceptions import ComponentLookupError
import Cobalt.Util
if __name__ == '__main__':
level = 20
if '-d' in sys.argv:
level = 10
Cobalt.Logging.setup_logging('cmd', to_syslog=False, level=0)
user = pwd.getpwuid(os.getuid())[0]
try:
pm = ComponentProxy("process-manager", defer=False)
except ComponentLookupError:
print >> sys.stderr, "Failed to connect to process manager"
sys.exit(1)
r = pm.add_jobs([{'tag':'process-group', 'user':user, 'args':[], 'env':{},
'executable':'/tmp/testscript', 'size':700, 'cwd':'/tmp', 'location':['ANLR00'],
'outputfile':'/tmp/test1-output', 'errorfile':'/tmp/test1-error', 'id': '*'}])
print "jobs : " + `len(r)`
pgid = r[0]['id']
while True:
r = pm.get_jobs([{'tag':'process-group', 'id':pgid, 'state':'*'}])
state = r[0]['state']
if state == 'running':
Cobalt.Util.sleep(5)
continue
else:
break
print "process group %s has completed" % (pgid)
if opts['held']:
query['state'] = opts['held']
else:
query['state'] = '*'
if opts['queue']:
query['queue'] = opts['queue']
else:
query['queue'] = '*'
try:
cqm = ComponentProxy("queue-manager", defer=False)
query['tag'] = 'job'
query['jobid'] = '*'
response = cqm.get_jobs([query])
except ComponentLookupError:
logger.error("Can't connect to the queue manager")
sys.exit(1)
#except:
#$logger.error("Error querying jobs")
#sys.exit(1)
# log jobid to stdout
if not response:
Cobalt.Logging.logging.error("Failed to match any jobs")
else:
Cobalt.Logging.logging.debug(response)
print " The following jobs matched your query:"
for job in response:
logger.error("node count out of realistic range")
sys.exit(1)
updates['nodes'] = opts['nodecount']
# ensure time is actually in minutes
if opts['time']:
if opts['time'][0] in ['+', '-']:
try:
minutes = Cobalt.Util.get_time(opts['time'][1:])
except Cobalt.Exceptions.TimeFormatError, e:
print "invalid time specification: %s" % e.args[0]
sys.exit(1)
jobdata = None
try:
cqm = ComponentProxy("queue-manager", defer=False)
jobdata = cqm.get_jobs(spec)
except ComponentLookupError:
print >> sys.stderr, "Failed to connect to queue manager"
sys.exit(1)
if not jobdata:
print "Failed to match any jobs"
sys.exit(1)
if opts['time'][0] == '-':
new_time = float(jobdata[0]['walltime']) - minutes
if new_time <= 0:
print >> sys.stderr, "invalid wall time: ", new_time
else:
updates['walltime'] = str(
float(jobdata[0]['walltime']) - minutes)
elif opts['time'][0] == '+':
if opts["held"]:
query["state"] = opts["held"]
else:
query["state"] = "*"
if opts["queue"]:
query["queue"] = opts["queue"]
else:
query["queue"] = "*"
try:
cqm = ComponentProxy("queue-manager", defer=False)
query["tag"] = "job"
query["jobid"] = "*"
response = cqm.get_jobs([query])
except ComponentLookupError:
logger.error("Can't connect to the queue manager")
sys.exit(1)
# except:
# $logger.error("Error querying jobs")
# sys.exit(1)
# log jobid to stdout
if not response:
Cobalt.Logging.logging.error("Failed to match any jobs")
else:
Cobalt.Logging.logging.debug(response)
print " The following jobs matched your query:"
for job in response:
def test_something(self):
logging.basicConfig()
try:
cqm = ComponentProxy("queue-manager")
except ComponentLookupError:
assert not "failed to connect to queue manager"
# add a queue
queues = cqm.add_queues([{"tag": "queue", "name": "default"}])
assert len(queues) == 1
# try adding a job to a queue that doesn't exist
try:
jobs = cqm.add_jobs([{"tag": "job", "queue": "jonx"}])
except xmlrpclib.Fault:
# trying to add a job to a queue that doesn't exist results in an xmlrpc Fault
pass
else:
assert not "Adding job to non-existent queue should raise xmlrpclib.Fault"
# get the list of available partitions and add them to the pool of managed partitions
try:
simulator = ComponentProxy("system")
except ComponentLookupError:
assert not "failed to connect to simulator"
for part_name in self.system._partitions:
partitions = simulator.add_partitions([{"tag": "partition", "name": part_name, "queue": "default"}])
assert len(partitions) == 1
partitions = simulator.set_partitions(
[{"tag": "partition", "name": part_name}], {"functional": True, "scheduled": True}
)
assert len(partitions) == 1
partitions = simulator.get_partitions([{"name": "*", "size": "*", "queue": "*"}])
assert len(partitions) > 0
# now run a real job
#
# 1. add the job to the default queue
# 2. obtain a partition for it to run on
# 3. start running it on that paritition
# 4. check that it started running
# 5. sleep for a bit, and then check that it's still running
# 6. sleep some more and then check to see if it actually finished running
nodes = partitions[0]["size"]
jobs = cqm.add_jobs(
[
{
"queue": "default",
"mode": "co",
"command": "/bin/ls",
"outputdir": os.getcwd(),
"walltime": 4,
"nodes": nodes,
"procs": nodes,
"args": [],
"user": "******",
"jobid": "*",
}
]
)
assert len(jobs) == 1
job = jobs[0]
jobid = job["jobid"]
job_location_args = [
{
"jobid": jobid,
"nodes": job["nodes"],
"queue": job["queue"],
"utility_score": 1,
"threshold": 1,
"walltime": job["walltime"],
"attrs": {},
}
]
locations = simulator.find_job_location(job_location_args, [])
assert locations.has_key(jobid)
location = locations[jobid]
cqm.run_jobs([{"jobid": jobid}], location)
r = cqm.get_jobs([{"jobid": jobid, "state": "*", "is_active": True}])
if not r:
assert not "the job didn't start"
time.sleep(20)
r = cqm.get_jobs([{"jobid": jobid, "state": "*", "is_active": True}])
if len(r) != 1:
assert not "the job has stopped running prematurely"
start_time = time.time()
while True:
r = cqm.get_jobs([{"jobid": jobid, "state": "*", "is_active": True}])
if r:
if time.time() - start_time > 240:
assert not "the job seems to have run overtime"
else:
time.sleep(5)
else:
break
# this time, we'll add a job to the queue, start the job, sleep for a bit
# and then try to kill the job before it has finished
nodes = partitions[0]["size"]
jobs = cqm.add_jobs(
[
{
"queue": "default",
"mode": "co",
"command": "/bin/ls",
"outputdir": os.getcwd(),
"walltime": 4,
"nodes": nodes,
"procs": nodes,
"args": [],
"user": "******",
"jobid": "*",
}
]
)
assert len(jobs) == 1
job = jobs[0]
jobid = job["jobid"]
job_location_args = [
{
"jobid": jobid,
"nodes": job["nodes"],
"queue": job["queue"],
"utility_score": 1,
"threshold": 1,
"walltime": job["walltime"],
"attrs": {},
}
]
locations = simulator.find_job_location(job_location_args, [])
assert locations.has_key(jobid)
location = locations[jobid]
cqm.run_jobs([{"jobid": jobid}], location)
r = cqm.get_jobs([{"jobid": jobid, "state": "*", "is_active": True}])
if not r:
assert not "the job didn't start"
time.sleep(20)
r = cqm.get_jobs([{"jobid": jobid, "is_active": True}])
if len(r) != 1:
assert not "the job has stopped running prematurely"
cqm.del_jobs([{"jobid": jobid}])
start_time = time.time()
while True:
r = cqm.get_jobs([{"jobid": jobid, "is_active": True, "state": "*"}])
if r:
if time.time() - start_time > 30:
assert not "the job didn't die when asked to"
else:
time.sleep(1)
else:
break
def test_something(self):
logging.basicConfig()
try:
cqm = ComponentProxy("queue-manager")
except ComponentLookupError:
assert not "failed to connect to queue manager"
# add a queue
queues = cqm.add_queues([{'tag': "queue", 'name': "default"}])
assert len(queues) == 1
# try adding a job to a queue that doesn't exist
try:
jobs = cqm.add_jobs([{'tag': "job", 'queue': "jonx"}])
except xmlrpclib.Fault:
# trying to add a job to a queue that doesn't exist results in an xmlrpc Fault
pass
else:
assert not "Adding job to non-existent queue should raise xmlrpclib.Fault"
# get the list of available partitions and add them to the pool of managed partitions
try:
simulator = ComponentProxy("system")
except ComponentLookupError:
assert not "failed to connect to simulator"
for part_name in self.system._partitions:
partitions = simulator.add_partitions([{
'tag': "partition",
'name': part_name,
'queue': "default"
}])
assert len(partitions) == 1
partitions = simulator.set_partitions([{
'tag': "partition",
'name': part_name
}], {
'functional': True,
'scheduled': True
})
assert len(partitions) == 1
partitions = simulator.get_partitions([{
'name': "*",
'size': "*",
'queue': "*"
}])
assert len(partitions) > 0
# now run a real job
#
# 1. add the job to the default queue
# 2. obtain a partition for it to run on
# 3. start running it on that paritition
# 4. check that it started running
# 5. sleep for a bit, and then check that it's still running
# 6. sleep some more and then check to see if it actually finished running
nodes = partitions[0]['size']
jobs = cqm.add_jobs([{
'queue': "default",
'mode': "co",
'command': "/bin/ls",
'outputdir': os.getcwd(),
'walltime': 4,
'nodes': nodes,
'procs': nodes,
'args': [],
'user': "******",
'jobid': "*"
}])
assert len(jobs) == 1
job = jobs[0]
jobid = job['jobid']
job_location_args = [{
'jobid': jobid,
'nodes': job['nodes'],
'queue': job['queue'],
'utility_score': 1,
'threshold': 1,
'walltime': job['walltime'],
'attrs': {}
}]
locations = simulator.find_job_location(job_location_args, [])
assert locations.has_key(jobid)
location = locations[jobid]
cqm.run_jobs([{'jobid': jobid}], location)
r = cqm.get_jobs([{'jobid': jobid, 'state': "*", 'is_active': True}])
if not r:
assert not "the job didn't start"
time.sleep(20)
r = cqm.get_jobs([{'jobid': jobid, 'state': "*", 'is_active': True}])
if len(r) != 1:
assert not "the job has stopped running prematurely"
start_time = time.time()
while True:
r = cqm.get_jobs([{
'jobid': jobid,
'state': "*",
'is_active': True
}])
if r:
if time.time() - start_time > 240:
assert not "the job seems to have run overtime"
else:
time.sleep(5)
else:
break
# this time, we'll add a job to the queue, start the job, sleep for a bit
# and then try to kill the job before it has finished
nodes = partitions[0]['size']
jobs = cqm.add_jobs([{
'queue': "default",
'mode': "co",
'command': "/bin/ls",
'outputdir': os.getcwd(),
'walltime': 4,
'nodes': nodes,
'procs': nodes,
'args': [],
'user': "******",
'jobid': "*"
}])
assert len(jobs) == 1
job = jobs[0]
jobid = job['jobid']
job_location_args = [{
'jobid': jobid,
'nodes': job['nodes'],
'queue': job['queue'],
'utility_score': 1,
'threshold': 1,
'walltime': job['walltime'],
'attrs': {}
}]
locations = simulator.find_job_location(job_location_args, [])
assert locations.has_key(jobid)
location = locations[jobid]
cqm.run_jobs([{'jobid': jobid}], location)
r = cqm.get_jobs([{'jobid': jobid, 'state': "*", 'is_active': True}])
if not r:
assert not "the job didn't start"
time.sleep(20)
r = cqm.get_jobs([{'jobid': jobid, 'is_active': True}])
if len(r) != 1:
assert not "the job has stopped running prematurely"
cqm.del_jobs([{'jobid': jobid}])
start_time = time.time()
while True:
r = cqm.get_jobs([{
'jobid': jobid,
'is_active': True,
'state': "*"
}])
if r:
if time.time() - start_time > 30:
assert not "the job didn't die when asked to"
else:
time.sleep(1)
else:
break
Cobalt.Logging.setup_logging('cobalt-mpirun', to_syslog=False, level=level)
logger = logging.getLogger('cobalt-mpirun')
try:
os.environ["COBALT_JOBID"] = os.environ["COBALT_JOBID"]
except KeyError:
logger.error("cobalt-mpirun must be invoked by a script submitted to cobalt.")
raise SystemExit, 1
try:
cqm = ComponentProxy("queue-manager", defer=False)
except ComponentLookupError:
print >> sys.stderr, "Failed to connect to queue manager"
sys.exit(1)
response = cqm.get_jobs([{'tag':'job', 'jobid':int(os.environ["COBALT_JOBID"]), 'state':'*', 'procs':'*', 'location':'*', 'walltime':'*', 'outputdir':'*'}])
if len(response) == 0:
logger.error("Error: cqm did not find a job with id " + os.environ["COBALT_JOBID"])
raise SystemExit, 1
if len(response) > 1:
logger.error("Error: cqm did not find a unique job with id " + os.environ["COBALT_JOBID"])
raise SystemExit, 1
j = response[0]
if j['location'] is None:
logger.error("Error: cobalt-mpirun's parent is in state '%s' and has not specified a partition." % j['state'])
raise SystemExit, 1
# j['location'] = "ANLR00"
arglist = ['-partition', j['location'][0]] + arglist
all_jobs = set()
for i in range(len(args)):
if args[i] == '*':
continue
try:
args[i] = int(args[i])
all_jobs.add(args[i])
except:
logger.error("jobid must be an integer")
sys.exit(1)
check_specs = [{'tag':'job', 'user':user, 'jobid':jobid, 'user_hold':'*'} for jobid in args]
try:
check_response = cqm.get_jobs(check_specs)
except xmlrpclib.Fault, flt:
print flt.faultString
raise SystemExit, 1
jobs_existed = [j.get('jobid') for j in check_response]
all_jobs = all_jobs.union(set(jobs_existed))
update_specs = [{'tag':'job', 'user':user, 'jobid':jobid, 'user_hold':"*", 'is_active':"*"} for jobid in jobs_existed]
if opt.deps:
updates = {'all_dependencies': []}
else:
updates = {'user_hold':False}
try:
update_response = cqm.set_jobs(update_specs, updates, user)
Cobalt.Logging.setup_logging('cobalt-mpirun', to_syslog=False, level=level)
logger = logging.getLogger('cobalt-mpirun')
try:
os.environ["COBALT_JOBID"] = os.environ["COBALT_JOBID"]
except KeyError:
logger.error("cobalt-mpirun must be invoked by a script submitted to cobalt.")
raise SystemExit, 1
try:
cqm = ComponentProxy("queue-manager", defer=False)
except ComponentLookupError:
print >> sys.stderr, "Failed to connect to queue manager"
sys.exit(1)
response = cqm.get_jobs([{'tag':'job', 'jobid':int(os.environ["COBALT_JOBID"]), 'state':'*', 'procs':'*', 'location':'*', 'walltime':'*', 'outputdir':'*'}])
if len(response) == 0:
logger.error("Error: cqm did not find a job with id " + os.environ["COBALT_JOBID"])
raise SystemExit, 1
if len(response) > 1:
logger.error("Error: cqm did not find a unique job with id " + os.environ["COBALT_JOBID"])
raise SystemExit, 1
j = response[0]
if j['location'] is None:
logger.error("Error: cobalt-mpirun's parent is in state '%s' and has not specified a partition." % j['state'])
raise SystemExit, 1
# j['location'] = "ANLR00"
arglist = ['-partition', j['location'][0]] + arglist