def finallyProcess(self, _edPlugin=None):
EDPluginExec.finallyProcess(self, _edPlugin)
self.DEBUG("EDPluginExecSimpleHTMLPagev1_1.finallyProcess...")
xsDataResultSimpleHTMLPage = XSDataResultSimpleHTMLPage()
xsDataResultSimpleHTMLPage.setPathToHTMLFile(XSDataFile(XSDataString(os.path.join(self.getWorkingDirectory(), self.strHtmlFileName))))
xsDataResultSimpleHTMLPage.setPathToHTMLDirectory(XSDataFile(XSDataString(self.getWorkingDirectory())))
# Write workflowStepReport HTML page
pathToIndexFile = self.workflowStepReport.renderHtml(self.getWorkingDirectory(), nameOfIndexFile=self.strHtmlFileName)
pathToJsonFile = self.workflowStepReport.renderJson(self.getWorkingDirectory())
# Store in Pyarch
if EDUtilsPath.isESRF() or EDUtilsPath.isEMBL() or EDUtilsPath.isMAXIV() or EDUtilsPath.isALBA:
strPyarchPath = None
if self.xsDataResultCharacterisation is not None:
strPyarchPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(self.xsDataResultCharacterisation.getDataCollection())
if strPyarchPath is None:
# For debugging purposes
strPyarchPath = EDUtilsPath.getEdnaUserTempFolder()
EDHandlerESRFPyarchv1_0.copyHTMLDir(_strPathToHTMLDir=os.path.dirname(self.strPath), _strPathToPyarchDirectory=strPyarchPath)
xsDataResultSimpleHTMLPage.setPathToHTMLDirectory(XSDataFile(XSDataString(strPyarchPath)))
if not os.path.exists(strPyarchPath):
os.makedirs(strPyarchPath, 0o755)
shutil.copy(pathToJsonFile, strPyarchPath)
pathToJsonFile = os.path.join(strPyarchPath, os.path.basename(pathToJsonFile))
# Write json file
xsDataResultSimpleHTMLPage.pathToJsonFile = XSDataFile(XSDataString(pathToJsonFile))
self.setDataOutput(xsDataResultSimpleHTMLPage)
def finallyProcess(self, _edPlugin=None):
EDPluginExec.finallyProcess(self, _edPlugin)
self.DEBUG("EDPluginExecSimpleHTMLPagev1_1.finallyProcess...")
xsDataResultSimpleHTMLPage = XSDataResultSimpleHTMLPage()
xsDataResultSimpleHTMLPage.setPathToHTMLFile(XSDataFile(XSDataString(os.path.join(self.getWorkingDirectory(), self.strHtmlFileName))))
xsDataResultSimpleHTMLPage.setPathToHTMLDirectory(XSDataFile(XSDataString(self.getWorkingDirectory())))
# Write workflowStepReport HTML page
pathToIndexFile = self.workflowStepReport.renderHtml(self.getWorkingDirectory(), nameOfIndexFile=self.strHtmlFileName)
pathToJsonFile = self.workflowStepReport.renderJson(self.getWorkingDirectory())
# Store in Pyarch
if EDUtilsPath.isESRF() or EDUtilsPath.isEMBL():
strPyarchPath = None
if self.xsDataResultCharacterisation is not None:
strPyarchPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(self.xsDataResultCharacterisation.getDataCollection())
if strPyarchPath is None:
# For debugging purposes
strPyarchPath = EDUtilsPath.getEdnaUserTempFolder()
EDHandlerESRFPyarchv1_0.copyHTMLDir(_strPathToHTMLDir=os.path.dirname(self.strPath), _strPathToPyarchDirectory=strPyarchPath)
xsDataResultSimpleHTMLPage.setPathToHTMLDirectory(XSDataFile(XSDataString(strPyarchPath)))
if not os.path.exists(strPyarchPath):
os.makedirs(strPyarchPath, 0o755)
shutil.copy(pathToJsonFile, strPyarchPath)
pathToJsonFile = os.path.join(strPyarchPath, os.path.basename(pathToJsonFile))
# Write json file
xsDataResultSimpleHTMLPage.pathToJsonFile = XSDataFile(XSDataString(pathToJsonFile))
self.setDataOutput(xsDataResultSimpleHTMLPage)
def testCreatePyarchHtmlDirectoryPath(self):
strTestDataDir = self.getPluginTestsDataHome()
strTestFile = os.path.join(strTestDataDir, "EDHandlerESRFPyarchv1_0", "XSDataCollection_reference.xml")
strXml = self.readAndParseFile(strTestFile)
xsDataCollection = XSDataCollection.parseString(strXml)
strPyarchHtmlDirectoryPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(xsDataCollection)
#print strPyarchHtmlDirectoryPath
strReferencePath = "/data/pyarch/id23eh1/Pasha/data/visitor/mx1199/id29/20111205/RAW_DATA/4ESR372D11/4ESR372D11_1_dnafiles"
EDAssert.equal(strReferencePath, strPyarchHtmlDirectoryPath, "Correct pyarch path")
def testCreatePyarchHtmlDirectoryPath(self):
strTestDataDir = self.getPluginTestsDataHome()
strTestFile = os.path.join(strTestDataDir, "EDHandlerESRFPyarchv1_0", "XSDataCollection_reference.xml")
strXml = self.readAndParseFile(strTestFile)
xsDataCollection = XSDataCollection.parseString(strXml)
strPyarchHtmlDirectoryPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(xsDataCollection)
#print strPyarchHtmlDirectoryPath
strReferencePath = "/data/pyarch/id23eh1/Pasha/data/visitor/mx1199/id29/20111205/RAW_DATA/4ESR372D11/4ESR372D11_1_dnafiles"
EDAssert.equal(strReferencePath, strPyarchHtmlDirectoryPath, "Correct pyarch path")
def testCreatePyarchHtmlDirectoryPath(self):
strTestDataDir = self.getPluginTestsDataHome()
strTestFile = os.path.join(strTestDataDir, "EDHandlerESRFPyarchv1_0", "XSDataCollection_reference.xml")
strXml = self.readAndParseFile(strTestFile)
xsDataCollection = XSDataCollection.parseString(strXml)
strPyarchHtmlDirectoryPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(xsDataCollection)
# print strPyarchHtmlDirectoryPath
strReferencePath = "/data/pyarch/2016/id30b/opid30b/20161214/RAW_DATA/Magda/Test_x1_2_dnafiles"
EDAssert.equal(strReferencePath, strPyarchHtmlDirectoryPath, "Correct pyarch path")
def testCreatePyarchHtmlDirectoryPath(self):
strTestDataDir = self.getPluginTestsDataHome()
strTestFile = os.path.join(strTestDataDir, "EDHandlerESRFPyarchv1_0",
"XSDataCollection_reference.xml")
strXml = self.readAndParseFile(strTestFile)
xsDataCollection = XSDataCollection.parseString(strXml)
strPyarchHtmlDirectoryPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(
xsDataCollection)
# print strPyarchHtmlDirectoryPath
strReferencePath = "/data/pyarch/2016/id30b/opid30b/20161214/RAW_DATA/Magda/Test_x1_2_dnafiles"
EDAssert.equal(strReferencePath, strPyarchHtmlDirectoryPath,
"Correct pyarch path")
def finallyProcess(self, _edPlugin=None):
EDPluginExec.finallyProcess(self, _edPlugin)
self.DEBUG("EDPluginExecSimpleHTMLPagev1_0.finallyProcess...")
# Render the page
strHTML = str(self.page)
EDUtilsFile.writeFile(self.strPath, strHTML)
xsDataResultSimpleHTMLPage = XSDataResultSimpleHTMLPage()
xsDataResultSimpleHTMLPage.setPathToHTMLFile(XSDataFile(XSDataString(self.strPath)))
xsDataResultSimpleHTMLPage.setPathToHTMLDirectory(XSDataFile(XSDataString(os.path.dirname(self.strPath))))
self.setDataOutput(xsDataResultSimpleHTMLPage)
# Store in Pyarch
strPyarchPath = None
if self.xsDataResultCharacterisation is not None:
strPyarchPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(self.xsDataResultCharacterisation.getDataCollection())
if strPyarchPath is None:
# For debugging purposes
strPyarchPath = EDUtilsPath.getEdnaUserTempFolder()
EDHandlerESRFPyarchv1_0.copyHTMLDir(_strPathToHTMLDir=os.path.dirname(self.strPath), _strPathToPyarchDirectory=strPyarchPath)
def finallyProcess(self, _edPlugin=None):
EDPluginExec.finallyProcess(self, _edPlugin)
self.DEBUG("EDPluginExecSimpleHTMLPagev2_0.finallyProcess...")
# Render the page
strHTML = str(self.page)
EDUtilsFile.writeFile(self.strPath, strHTML)
xsDataResultSimpleHTMLPage = XSDataResultSimpleHTMLPage()
xsDataResultSimpleHTMLPage.setPathToHTMLFile(XSDataFile(XSDataString(self.strPath)))
xsDataResultSimpleHTMLPage.setPathToHTMLDirectory(XSDataFile(XSDataString(os.path.dirname(self.strPath))))
self.setDataOutput(xsDataResultSimpleHTMLPage)
# Store in Pyarch
strPyarchPath = None
if self.xsDataResultCharacterisation is not None:
strPyarchPath = EDHandlerESRFPyarchv1_0.createPyarchHtmlDirectoryPath(self.xsDataResultCharacterisation.getDataCollection())
if strPyarchPath is None:
# For debugging purposes
strPyarchPath = EDUtilsPath.getEdnaUserTempFolder()
EDHandlerESRFPyarchv1_0.copyHTMLDir(_strPathToHTMLDir=os.path.dirname(self.strPath), _strPathToPyarchDirectory=strPyarchPath)
