def testSetDataInput(self):
"""
This method test the setDataInput method of the Labelit plugin by providing an XML string
and then retriving an XSDataInputLabelit object.
"""
#Create the plugin instance
edPluginControlDLSArchiver = self.createPlugin()
# create an object which contains the test information
edStringInputPluginControlDLSArchiverv10XML = EDUtilsTest.readAndParseFile(
self.m_edStringReferenceDataInputFile)
# gives the data to the plugin
edPluginControlDLSArchiver.setDataInput(
edStringInputPluginControlDLSArchiverv10XML)
# get the data from the plugin
xsDataInputPluginControlDLSArchiver = edPluginControlDLSArchiver.getDataInput(
)
# get the string of the path
edStringPath = EDString(xsDataInputPluginControlDLSArchiver.
getDropZonePath().getPath().getValue())
# create the test path
edStringPathReference = EDString("../data/test/ingest/")
# Actually test the data.
EDAssert.equal(edStringPath, edStringPathReference)
#check out that the list is getting read in properly
#FIXME, add in some proper test code here
print xsDataInputPluginControlDLSArchiver.getDropZonePath().getPath(
).getValue()
print xsDataInputPluginControlDLSArchiver.getIgnoreList()[1].getValue()
def testSetDataInput( self ):
"""
This method test the setDataInput method of the SRBRegister plugin by providing an XML string
and then retriving an XSDataInputLabelit object. It checks both inputs
"""
#Create the plugin instance
edPluginExecSRBRegister = self.createPlugin()
# create an object which contains the test information
edStringInputExecSRBRegisterv10XML = EDUtilsTest.readAndParseFile( self.m_edStringReferenceDataInputFile )
# gives the data to the plugin
edPluginExecSRBRegister.setDataInput( edStringInputExecSRBRegisterv10XML )
# get the data from the plugin
xsDataInputPluginExecSRBRegister = edPluginExecSRBRegister.getDataInput()
# get the string of the path
edStringPath = EDString( xsDataInputPluginExecSRBRegister.getSrbDropFileName().getPath().getValue() )
# create the test path
edStringPathReference = EDString( "../data/out/test2.drop" )
# Actually test the data.
EDAssert.equal( edStringPathReference, edStringPath )
# test the reading of the other data
edStringPath = EDString( xsDataInputPluginExecSRBRegister.getXmlIngestFileName().getPath().getValue() )
# create the test path
edStringPathReference = EDString( "../data/create-ds.xml" )
# Actually test the data.
EDAssert.equal( edStringPathReference, edStringPath )
def generateExecutiveSummary(self, _oedPlugin):
"""
Generates a summary of the execution of the plugin.
"""
self.DEBUG("EDPluginSTACv10Strategy.generateExecutiveSummary")
self.addExecutiveSummaryLine("<!--SUMMARY_BEGIN-->")
if (self.getStringVersion() is not None):
self.addExecutiveSummaryLine(self.getStringVersion() +
" by Sandor Brockhauser")
import math
self.addExecutiveSummaryLine("")
#also STAC credit string
self.addExecutiveSummaryLine(
EDString(self.m_oxsKappaResponse.getComment()))
self.addExecutiveSummaryLine(
"----------------------------------------------------------------")
self.addExecutiveSummaryLine(
"--ID------OStart----OEnd------K--------P----#Img-----Compl%-----")
oxsDataList = self.m_oxsKappaResponse.getGenerated_sweep()
for oxsDataSweep in oxsDataList:
self.addExecutiveSummaryLine( "%5s : %7s <-> %7s %7s %7s %4s %7s" % \
( EDString(oxsDataSweep.getStrategyID()), \
EDString(oxsDataSweep.getOmegaStart()),
EDString(oxsDataSweep.getOmegaEnd()),
EDString(oxsDataSweep.getKappa()),
EDString(oxsDataSweep.getPhi()),
#exposure,
#resolution,
EDString(1+int(math.fabs(float(oxsDataSweep.getOmegaEnd())-float(oxsDataSweep.getOmegaStart())))),
EDString(oxsDataSweep.getCompleteness()) ) )
self.addExecutiveSummaryLine(
"----------------------------------------------------------------")
self.addExecutiveSummaryLine("<!--SUMMARY_END-->")
def openXMLTree(self):
"""
Opens the xml file and places the tree in the object
"""
# get the filename to load
# get the data from the plugin
xsDataInputPluginExecSRBRegister = self.getDataInput()
# get the string of the path
xsDataInputPluginExecSRBRegister.getXmlIngestFileName().getPath(
).getValue()
edFileName = EDString(xsDataInputPluginExecSRBRegister.
getXmlIngestFileName().getPath().getValue())
#print '\nedFileName= ' + str( edFileName )
try:
self.edTree = minidom.parse(edFileName)
except Exception:
# This is to make the tests pass, and it is during the postprocess step where the data is returned from the plugin.
EDVerbose.DEBUG(
strftime("%Y-%m-%d %H:%M:%S") +
" *** EDPluginExecSRBRegisterv10.openXMLTree Failed to parse file '%s' renaming it."
% edFileName)
#os.rename( edFileName, edFileName + '.invalid' )
shutil.move(edFileName, edFileName + '.invalid')
def postProcess(self, _edObject=None):
"""
reading back and genericly process the output
"""
EDPluginExecProcessScript.postProcess(self)
self.DEBUG("EDPluginSTACv10.postProcess")
OutputData = self.fetchOutput()
self.DEBUG("EDPluginSTACv10.postProcess: " + EDString(OutputData))
if (OutputData is not None):
self.setDataOutput(OutputData)
def generateExecutiveSummary(self, _oedPlugin):
"""
Generates a summary of the execution of the plugin.
"""
self.DEBUG("EDPluginSTACv10Alignment.generateExecutiveSummary")
self.addExecutiveSummaryLine("<!--SUMMARY_BEGIN-->")
if (self.getStringVersion() is not None):
self.addExecutiveSummaryLine(self.getStringVersion() +
" by Sandor Brockhauser")
self.addExecutiveSummaryLine("")
self.addExecutiveSummaryLine(
EDString(self.m_oxsKappaAlignmentResponse.getComment()))
self.addExecutiveSummaryLine(
"-------------------------------------------------------")
self.addExecutiveSummaryLine(
"--v1-----------v2------------O---------K--------P------")
oxsDataKappaAlignmentList = self.m_oxsKappaAlignmentResponse.getPossible_orientation(
)
for oxsDataPossible_orientation in oxsDataKappaAlignmentList:
self.addExecutiveSummaryLine( "%13s %13s : %7s %7s %7s" % \
( EDString(oxsDataPossible_orientation.getV1()), \
EDString(oxsDataPossible_orientation.getV2()),
EDString(oxsDataPossible_orientation.getOmega()),
EDString(oxsDataPossible_orientation.getKappa()),
EDString(oxsDataPossible_orientation.getPhi()) ) )
self.addExecutiveSummaryLine(
"-------------------------------------------------------")
self.addExecutiveSummaryLine("<!--SUMMARY_END-->")
def testSetDataInput(self):
"""
This method test the setDataInput method of the Labelit plugin by providing an XML string
and then retriving an XSDataInputLabelit object.
"""
#Create the plugin instance
edPluginExecICATIngester = self.createPlugin()
# create an object which contains the test information
edStringInputExecICATIngesterv10XML = EDUtilsTest.readAndParseFile(
self.m_edStringReferenceDataInputFile)
# gives the data to the plugin
edPluginExecICATIngester.setDataInput(
edStringInputExecICATIngesterv10XML)
# get the data from the plugin
xsDataInputPluginExecICATIngester = edPluginExecICATIngester.getDataInput(
)
# get the string of the path
edStringPath = EDString(xsDataInputPluginExecICATIngester.
getXmlIngestFileName().getPath().getValue())
# create the test path
edStringPathReference = EDString("/tmp/xmlingest/")
# Actualy test the data.
EDAssert.equal(edStringPathReference, edStringPath)
def getFileSize(self):
"""
Function to compute the file size
"""
EDVerbose.DEBUG(
strftime("%Y-%m-%d %H:%M:%S") +
" *** EDPluginExecSRBRegisterv10.getFileSize...")
# get the filename to load
# get the data from the plugin
xsDataInputPluginExecSRBRegister = self.getDataInput()
# get the string of the path
xsDataInputPluginExecSRBRegister.getXmlIngestFileName().getPath(
).getValue()
edFileName = EDString(xsDataInputPluginExecSRBRegister.
getXmlIngestFileName().getPath().getValue())
# get the size of the current file
edFileStats = os.stat(edFileName)
self.edXMLFileSize = edFileStats[stat.ST_SIZE]