def testGenerateExecutableScript(self):
listCommands = ['COMMAND1', 'COMMAND2 BANANA']
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setScriptShell("/bin/bash")
edPluginExecProcessScript.setScriptBaseName("TestCaseGenerateScript")
edPluginExecProcessScript.setListCommandExecution(listCommands)
edPluginExecProcessScript.setRequireCCP4(True)
edPluginExecProcessScript.setSetupCCP4("/usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash")
edPluginExecProcessScript.setScriptExecutable("cat")
edPluginExecProcessScript.configure()
strScript = edPluginExecProcessScript.prepareScript()
edPluginExecProcessScript.writeExecutableScript(strScript)
strScriptFileName = edPluginExecProcessScript.getScriptFileName()
strScriptFromFile = edPluginExecProcessScript.readProcessFile(strScriptFileName)
lstScriptReference = ["#!/bin/bash",
"cd %s" % edPluginExecProcessScript.getWorkingDirectory(),
". /usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash",
"cat > TestCaseGenerateScript.log 2> TestCaseGenerateScript.err << EOF-EDPluginExecProcessScript &",
"COMMAND1",
"COMMAND2 BANANA",
"EOF-EDPluginExecProcessScript",
"ednaJobPid=$!",
"ednaJobHostName=$(hostname)",
'echo "$ednaJobHostName $ednaJobPid" > %s' % edPluginExecProcessScript.getPathToHostNamePidFile(),
"wait $ednaJobPid",
""]
strScriptReference = EDUtilsPlatform.linesep.join(lstScriptReference)
EDAssert.equal(strScriptFromFile, strScriptReference)
def testGenerateExecutableScript(self):
listCommands = ['COMMAND1', 'COMMAND2 BANANA']
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setScriptShell("/bin/bash")
edPluginExecProcessScript.setScriptBaseName("TestCaseGenerateScript")
edPluginExecProcessScript.setListCommandExecution(listCommands)
edPluginExecProcessScript.setRequireCCP4(True)
edPluginExecProcessScript.setSetupCCP4("/usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash")
edPluginExecProcessScript.setScriptExecutable("cat")
edPluginExecProcessScript.configure()
strScript = edPluginExecProcessScript.prepareScript()
edPluginExecProcessScript.writeExecutableScript(strScript)
strScriptFileName = edPluginExecProcessScript.getScriptFileName()
strScriptFromFile = edPluginExecProcessScript.readProcessFile(strScriptFileName)
lstScriptReference = ["#!/bin/bash",
"cd %s" % edPluginExecProcessScript.getWorkingDirectory(),
". /usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash",
"cat > TestCaseGenerateScript.log 2> TestCaseGenerateScript.err << EOF-EDPluginExecProcessScript &",
"COMMAND1",
"COMMAND2 BANANA",
"EOF-EDPluginExecProcessScript",
"ednaJobPid=$!",
"ednaJobHostName=$(hostname)",
'echo "$ednaJobHostName $ednaJobPid" > %s' % edPluginExecProcessScript.getPathToHostNamePidFile(),
"wait $ednaJobPid",
""]
strScriptReference = EDUtilsPlatform.linesep.join(lstScriptReference)
EDAssert.equal(strScriptFromFile, strScriptReference)
def testExecuteScript(self):
listCommandExecution = list(['COMMAND1', 'COMMAND2 BANANA'])
strLogReference = EDUtilsPlatform.linesep.join(["COMMAND1", "COMMAND2 BANANA", ""])
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setListCommandExecution(listCommandExecution)
edPluginExecProcessScript.setRequireCCP4(False)
edPluginExecProcessScript.setScriptExecutable("%s %s" % (sys.executable,
os.path.join(os.environ["EDNA_HOME"], "edna-kernel", "bin", "cat.py")))
edPluginExecProcessScript.setTimeOut(15.0)
edPluginExecProcessScript.setScriptShell("python")
from XSDataCommon import XSData
edPluginExecProcessScript.setXSDataInputClass(XSData)
edPluginExecProcessScript.execute()
edPluginExecProcessScript.synchronize()
strScriptLogFileName = edPluginExecProcessScript.getScriptLogFileName()
strLogFromFile = edPluginExecProcessScript.readProcessLogFile()
EDAssert.equal(strLogFromFile, strLogReference)
def testExecuteScript(self):
listCommandExecution = list(['COMMAND1', 'COMMAND2 BANANA'])
strLogReference = EDUtilsPlatform.linesep.join(["COMMAND1", "COMMAND2 BANANA", ""])
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setListCommandExecution(listCommandExecution)
edPluginExecProcessScript.setRequireCCP4(False)
edPluginExecProcessScript.setScriptExecutable("%s %s" % (sys.executable,
os.path.join(EDUtilsPath.EDNA_HOME, "kernel", "bin", "cat.py")))
edPluginExecProcessScript.setTimeOut(15.0)
edPluginExecProcessScript.setScriptShell("python")
from XSDataCommon import XSData
edPluginExecProcessScript.setXSDataInputClass(XSData)
edPluginExecProcessScript.execute()
edPluginExecProcessScript.synchronize()
strScriptLogFileName = edPluginExecProcessScript.getScriptLogFileName()
strLogFromFile = edPluginExecProcessScript.readProcessLogFile()
EDAssert.equal(strLogFromFile, strLogReference)
