def savePatient():
patient_name = "Ritwik"
patient_age = 21
username = "******"
files = [
DicomSeries('152265', 'T2 MRI', [
DicomImage('IMG5465.dcm', 'dksdfisdfjijskdk'),
DicomImage('IMG4465.dcm', 'dksdfisdfjijskds')
]),
DicomSeries('152265', 'T1 MRI', [
DicomImage('IMG5467.dcm', 'dksdfissfjijskdk'),
DicomImage('IMG4468.dcm', 'dksdfisdfjijsdds')
])
]
patient_cases = PatientCases(username, patient_name, patient_age, files)
caseid = patient_cases.save()
return "done"
def upload():
response = {"error": {}}
#if username is in session then the call is web call, so use that username
if 'username' in session and len(session['username']) > 0:
username = session['username']
else:
if 'key' not in request.form or len(request.form['key']) == 0:
response['error']['error'] = True
response['error']['error_message'] = "key not specified"
response['error']['error_type'] = "AUTH_ERROR"
return jsonify(response)
auth_result = Auth.checkKeyValidity(request.form['key'])
if not auth_result['valid']:
response['error']['error'] = True
response['error']['error_message'] = "key not valid"
response['error']['error_type'] = "AUTH_ERROR"
return jsonify(response)
username = auth_result['username']
if 'case_name' in request.form:
case_name = request.form['case_name']
else:
case_name = None
uploaded_files = flask.request.files.getlist("files[]")
if len(uploaded_files) == 0:
response['error']['error'] = True
response['error']['error_message'] = "Files not Selected"
response['error']['error_type'] = "PARAMETER_ERROR"
return jsonify(response)
#print uploaded_files
files = []
#directory = '/var/www/temp_uploads/'
directory = UPLOAD_DIR
print "Uploading to directory: " + directory
for f in uploaded_files:
fi = {}
name = os.path.splitext(f.filename)[0]
suffix = time.time()
filename = name + str(suffix)
filename = filename.replace('.', '')
fi['name_on_disk'] = filename
fi['original_name'] = f.filename
files.append(fi)
f.save(os.path.join(directory, filename))
result = Upload(files)
if result.errorPresent:
response['error'] = result.error
return jsonify(response)
else:
#group the images
dv = DicomDirValidator(result.validators)
dicomSeries = []
i = 0
response['images'] = []
for series in dv.series:
images = []
res_images = {}
res_images['series_time'] = series.seriesTime
res_images['series_description'] = series.seriesDescription
res_images['images'] = []
for validator in series.dv:
images.append(
DicomImage(validator['org_filename'],
validator['disk_filename']))
image = {}
image['filename'] = validator['org_filename']
res_images['images'].append(image)
response['images'].append(res_images)
dicomSeries.append(
DicomSeries(series.seriesTime, series.seriesDescription,
images))
case_id = PatientCases(username, case_name, dv.patientName,
dv.patientAge, dicomSeries).save()
response['case_id'] = case_id
response['patient_name'] = dv.patientName
if case_name != None:
response['case_name'] = case_name
response['patient_age'] = dv.patientAge
response['error']['error'] = False
i = 0
for series in response['images']:
j = 0
for image in series['images']:
image['url'] = BASE_URL + url_for('patient_cases_api.getImage',
case_id=response['case_id'],
index_1=i,
index_2=j)
j += 1
i += 1
return jsonify(response)