class Ui_MetaboliteEditDialog(object):
def setupUi(self, MetaboliteEditDialog):
MetaboliteEditDialog.setObjectName("MetaboliteEditDialog")
MetaboliteEditDialog.resize(240, 223)
self.verticalLayout = QtWidgets.QVBoxLayout(MetaboliteEditDialog)
self.verticalLayout.setObjectName("verticalLayout")
self.attributeWidget = MetaboliteAttributesDisplayWidget(
MetaboliteEditDialog)
self.attributeWidget.setObjectName("attributeWidget")
self.verticalLayout.addWidget(self.attributeWidget)
self.tabWidget = QtWidgets.QTabWidget(MetaboliteEditDialog)
self.tabWidget.setObjectName("tabWidget")
self.reactionsTab = ReactionsDisplayWidget()
self.reactionsTab.setObjectName("reactionsTab")
self.verticalLayout_2 = QtWidgets.QVBoxLayout(self.reactionsTab)
self.verticalLayout_2.setObjectName("verticalLayout_2")
self.tabWidget.addTab(self.reactionsTab, "")
self.annotationTab = AnnotationDisplayWidget()
self.annotationTab.setObjectName("annotationTab")
self.verticalLayout_3 = QtWidgets.QVBoxLayout(self.annotationTab)
self.verticalLayout_3.setObjectName("verticalLayout_3")
self.tabWidget.addTab(self.annotationTab, "")
self.evidenceTab = EvidenceDisplayWidget()
self.evidenceTab.setObjectName("evidenceTab")
self.verticalLayout_4 = QtWidgets.QVBoxLayout(self.evidenceTab)
self.verticalLayout_4.setObjectName("verticalLayout_4")
self.tabWidget.addTab(self.evidenceTab, "")
self.verticalLayout.addWidget(self.tabWidget)
self.buttonBox = QtWidgets.QDialogButtonBox(MetaboliteEditDialog)
self.buttonBox.setOrientation(QtCore.Qt.Horizontal)
self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel
| QtWidgets.QDialogButtonBox.Save)
self.buttonBox.setObjectName("buttonBox")
self.verticalLayout.addWidget(self.buttonBox)
self.retranslateUi(MetaboliteEditDialog)
self.tabWidget.setCurrentIndex(0)
self.buttonBox.accepted.connect(MetaboliteEditDialog.accept)
self.buttonBox.rejected.connect(MetaboliteEditDialog.reject)
QtCore.QMetaObject.connectSlotsByName(MetaboliteEditDialog)
def retranslateUi(self, MetaboliteEditDialog):
_translate = QtCore.QCoreApplication.translate
MetaboliteEditDialog.setWindowTitle(
_translate("MetaboliteEditDialog", "Edit metabolite"))
self.tabWidget.setTabText(
self.tabWidget.indexOf(self.reactionsTab),
_translate("MetaboliteEditDialog", "Reactions"))
self.tabWidget.setTabText(
self.tabWidget.indexOf(self.annotationTab),
_translate("MetaboliteEditDialog", "Annotation"))
self.tabWidget.setTabText(
self.tabWidget.indexOf(self.evidenceTab),
_translate("MetaboliteEditDialog", "Evidence"))
def test_setting_item(self):
metabolite = Metabolite("test_id", "H2O", "Test metabolie", -5, "m")
model = Model()
widget = MetaboliteAttributesDisplayWidget()
# Test prestate
assert widget.iDLineEdit.text() == ""
assert widget.nameLineEdit.text() == ""
assert widget.compartmentComboBox.currentText() == ""
assert widget.chargeSpinBox.value() == 0
assert widget.formulaLineEdit.text() == ""
widget.set_item(metabolite, model)
assert widget.iDLineEdit.text() == metabolite.id
assert widget.nameLineEdit.text() == metabolite.name
assert widget.compartmentComboBox.currentText(
) == metabolite.compartment
assert widget.chargeSpinBox.value() == metabolite.charge
assert widget.formulaLineEdit.text() == metabolite.formula
assert widget.valid_inputs() is True
assert widget.content_changed is False
widget.set_item(None, model)
assert widget.iDLineEdit.text() == ""
assert widget.nameLineEdit.text() == ""
assert widget.compartmentComboBox.currentText() == ""
assert widget.chargeSpinBox.value() == 0.
assert widget.formulaLineEdit.text() == ""
assert widget.valid_inputs() is False
assert widget.content_changed is False
def test_changing_id(self):
metabolite = Metabolite(compartment="m")
model = Model()
widget = MetaboliteAttributesDisplayWidget()
widget.set_item(metabolite, model)
assert widget._id_valid is False
QtTest.QTest.keyClick(widget.iDLineEdit, "V")
assert widget._id_valid is True
QtTest.QTest.keyClick(widget.iDLineEdit, "a")
assert widget._id_valid is True
QtTest.QTest.keyClick(widget.iDLineEdit, "#")
assert widget._id_valid is False
def test_changed_triggered_by_charge_change(self):
widget = MetaboliteAttributesDisplayWidget()
mock = Mock()
widget.changed.connect(mock.test)
assert mock.test.called is False
QtTest.QTest.keyClicks(widget.formulaLineEdit, "3")
assert mock.test.called is True
def test_changing_formula(self):
metabolite = Metabolite(id="m1", compartment="m")
model = Model()
widget = MetaboliteAttributesDisplayWidget()
widget.set_item(metabolite, model)
assert widget._id_valid is True
# Check empty formula is valid
assert widget._formula_valid is True
QtTest.QTest.keyClick(widget.formulaLineEdit, "C")
assert widget._formula_valid is True
QtTest.QTest.keyClick(widget.formulaLineEdit, "2")
assert widget._formula_valid is True
QtTest.QTest.keyClick(widget.formulaLineEdit, "(")
assert widget._formula_valid is False
def test_changed_triggered_by_compartment_change(self):
widget = MetaboliteAttributesDisplayWidget()
mock = Mock()
widget.compartmentComboBox.addItem("m")
widget.compartmentComboBox.setCurrentIndex(-1)
widget.changed.connect(mock.test)
assert mock.test.called is False
QtTest.QTest.keyClick(widget.compartmentComboBox, QtCore.Qt.Key_Down)
assert mock.test.called is True
def test_save_state_new_metabolite(self):
metabolite = Metabolite()
model = Model()
widget = MetaboliteAttributesDisplayWidget()
widget.set_item(metabolite, model)
new_id = "New"
new_name = "Name"
new_charge = 2.
new_formula = "H20"
new_compartment = "c"
widget.iDLineEdit.setText(new_id)
widget.nameLineEdit.setText(new_name)
widget.chargeSpinBox.setValue(new_charge)
widget.formulaLineEdit.setText(new_formula)
widget.compartmentComboBox.addItem(new_compartment)
widget.compartmentComboBox.setCurrentText(new_compartment)
widget.save_state()
assert metabolite.id == new_id
assert metabolite.name == new_name
assert metabolite.charge == new_charge
assert metabolite.formula == new_formula
assert metabolite.compartment == new_compartment
assert metabolite in model.metabolites
assert metabolite in model.QtMetaboliteTable.get_items()
def test_save_state_existing_metabolite(self):
metabolite = Metabolite(id="m1",
charge=1,
name="old name",
formula="O2",
compartment="c")
model = Model()
model.gem_add_metabolites((metabolite, ))
widget = MetaboliteAttributesDisplayWidget()
widget.set_item(metabolite, model)
new_id = "New_id"
new_name = "New name"
new_charge = 3.
new_compartment = "m"
new_formula = "H2O"
widget.iDLineEdit.setText(new_id)
widget.nameLineEdit.setText(new_name)
widget.chargeSpinBox.setValue(new_charge)
widget.compartmentComboBox.addItem(new_compartment)
widget.compartmentComboBox.setCurrentIndex(
widget.compartmentComboBox.count() - 1)
widget.formulaLineEdit.setText(new_formula)
widget.save_state()
assert metabolite.id == new_id
assert metabolite.name == new_name
assert metabolite.charge == new_charge
assert metabolite.compartment == new_compartment
assert metabolite.formula == new_formula
assert model.metabolites.has_id(new_id)
def test_valid_input(self):
# Note: The compartment needs to be set as valid input
metabolite = Metabolite(id="test", compartment="m")
model = Model()
widget = MetaboliteAttributesDisplayWidget()
widget.set_item(metabolite, model)
assert widget.valid_inputs() is True
widget.iDLineEdit.clear()
assert widget.valid_inputs() is False