def test_creation_of_object(self):
with self.assertRaises(ValueError):
GPL(name='name',
table=['a'],
metadata=self.metadata,
columns=self.columns1)
with self.assertRaises(TypeError):
GPL(name='name',
table=self.table1,
metadata=[],
columns=self.columns1)
with self.assertRaises(ValueError):
GPL(name='name',
table=self.table1,
metadata=self.metadata,
columns=[])
with self.assertRaises(DataIncompatibilityException):
GPL(name='name',
table=self.table1,
metadata=self.metadata,
columns=self.columns2)
GPL(name='name',
table=self.table1,
metadata=self.metadata,
columns=self.columns1)
def setUp(self):
self.header1 = ['a', 'b', 'c']
self.header2 = ['a', 'b', 'd']
self.columns_desc = [['first column'], ['second column'],
['third column']]
self.data = [[1, 2, 3], [4, 5, 6]]
self.table1 = DataFrame(self.data, columns=self.header1)
self.table2 = DataFrame(self.data, columns=self.header2)
self.columns1 = DataFrame(self.columns_desc,
self.header1,
columns=['description'])
self.columns2 = DataFrame(self.columns_desc,
self.header2,
columns=['description'])
self.metadata = {'name': 'PLATFORM'}
self.gpl = GPL(name='name',
table=self.table1,
metadata=self.metadata,
columns=self.columns1)
self.gsm1 = GSM(name='name',
table=self.table1,
metadata=self.metadata,
columns=self.columns1)
self.gsm2 = GSM(name='name',
table=self.table2,
metadata=self.metadata,
columns=self.columns2)
self.gsms = {'a': self.gsm1, 'b': self.gsm2}
self.gpls = {'a': self.gpl}
def test_simple_data(self):
gpl = GPL(name='name',
table=self.table1,
metadata=self.metadata,
columns=self.columns1)
self.assertEqual(gpl.table.ix[0, 'a'], 1)
self.assertEqual(gpl.table.ix[1, 'b'], 5)
def setUp(self):
self.header1 = ["a", "b", "c"]
self.header2 = ["a", "b", "d"]
self.columns_desc = [["first column"], ["second column"],
["third column"]]
self.data = [[1, 2, 3], [4, 5, 6]]
self.table1 = DataFrame(self.data, columns=self.header1)
self.table2 = DataFrame(self.data, columns=self.header2)
self.columns1 = DataFrame(self.columns_desc,
self.header1,
columns=["description"])
self.columns2 = DataFrame(self.columns_desc,
self.header2,
columns=["description"])
self.metadata = {"name": "PLATFORM"}
self.gpl = GPL(
name="name",
table=self.table1,
metadata=self.metadata,
columns=self.columns1,
)
self.gsm1 = GSM(
name="name",
table=self.table1,
metadata=self.metadata,
columns=self.columns1,
)
self.gsm2 = GSM(
name="name",
table=self.table2,
metadata=self.metadata,
columns=self.columns2,
)
self.gsms = {"a": self.gsm1, "b": self.gsm2}
self.gpls = {"a": self.gpl}
def test_simple_data(self):
gpl = GPL(
name="name",
table=self.table1,
metadata=self.metadata,
columns=self.columns1,
)
self.assertEqual(gpl.table.loc[0, "a"], 1)
self.assertEqual(gpl.table.loc[1, "b"], 5)