def allExpIDsByCat():
'''
Returns a dictionary with all neuron categories as keys and lists of corresponding Experiment Ids as values
:return: dict
'''
return getExpIDsByCategory(excel, excelSheet, categories, spike2Path)
categories = [
# 'DL-Int-1',
# 'DL-Int-2',
# 'JO neuron',
# 'MB neurons',
'BilateralN',
# 'DescendingN',
# 'AscendingN',
# 'Bilateral Descending N',
# 'JO terminal local neuron'
]
mdDF = parseMetaDataFile(excel, excelSheet, spike2Path)
expNames = map(str, mdDF.index)
expIDsByCat = getExpIDsByCategory(excel, excelSheet, categories, spike2Path)
# **********************************************************************************************************************
# # NIXPath = os.path.join(homeFolder, 'DataAndResults/GJEphys/NIXFiles/')
# # # expIDsByCat = {'DL-Int-1': ['130313-4Rh']}
# # expIDsByCat = {"BilateralN": ["130529-2Al",
# # "131113-1Al"]}
# expIDsByCat = {'DL-Int-1': ['130605-1LY']}
# **********************************************************************************************************************
# NIXPath = os.path.join(homeFolder, 'DataAndResults/GJEphys/NIXFiles/')
# expIDsByCat = {
# 'AscendingN': ['130205-1LY'],
# 'Bilateral Descending N': ['130313-3LY'],
# 'BilateralN': ['130514-1LY'],
# 'DL-Int-1': ['140424-1LY'],
# 'DL-Int-2': ['130205-2LY'],
# 'DescendingN': ['130320-1Rh'],
nixPath = os.path.join(homeFolder, 'DataAndResults/GJEphys/NIXFiles')
toIgnoreFile = os.path.join(
homeFolder, 'DataAndResults/GJEphys/NIXFiles/toIgnore.json')
excel = os.path.join(
homeFolder,
'DataAndResults/GJEphys/spike2Files/neuron_database_20150720ha_ver6_modAK.xlsx'
)
excelSheet = 'Kai-san final report150803'
resDir = os.path.join(homeFolder, 'DataAndResults/GJEphys/Results/')
filterExpIDs = os.path.join(
homeFolder, 'DataAndResults/GJEphys/expIDFilters/Ai2017_DL-Int-1.xlsx')
filterExpIDsDF = pd.read_excel(filterExpIDs)
expIDsByCat = getExpIDsByCategory(excel, excelSheet, ["DL-Int-1"],
spike2Path)
expNames = filterExpIDsDF.loc[:, mdFN["expID"]]
filterStub = os.path.split(filterExpIDs)[1][:-5]
filterOutDir = os.path.join(resDir, filterStub)
if not os.path.isdir(filterOutDir):
os.mkdir(filterOutDir)
outFile = os.path.join(filterOutDir, "spontAct3Sec.xlsx")
outPDFFile = os.path.join(filterOutDir, "spontAct3SecVsPrevFreqs.pdf")
if sys.argv[1] == "saveXL":
saveSpontActivityRates(outFile=outFile,
toIgnoreFile=toIgnoreFile,
nixPath=nixPath,