def remote_job(self, command):
command = 'echo $$; ' + command
_, stdout, stderr = self.client.exec_command(command, bufsize=0)
pid = stdout.readline().strip('\n')
self.feedback('PID ' + pid)
def report_output(stdout, stderr):
try:
import sys
for line in stdout:
print(line.strip('\n'))
sys.stdout.flush()
for line in stderr:
print(line.strip('\n'))
sys.stdout.flush()
self.remote_pid = None
except Exception as e:
print(e)
import traceback
traceback.print_exc()
sys.stdout.flush()
from IPython.lib import backgroundjobs as bg
jobs = bg.BackgroundJobManager()
# The new() method does an unfortunate print statement.
# So we switch the printing context to a detached Output to throw it away.
tossout = Output()
with tossout:
jobs.new(report_output, stdout, stderr)
return pid
def __init__ (self, channels = [0, 1], input_range = [1.0, 1.0]):
"""Oscilloscope application"""
# instantiate both oscilloscopes
self.channels = channels
self.input_range = input_range
# this will load the FPGA
try:
self.ovl = overlay()
except ResourceWarning:
print ("FPGA bitstream is already loaded")
# wait a bit for the overlay to be properly applied
# TODO it should be automated in the library
time.sleep(0.5)
# ocsilloscope channels
self.osc = [self.channel(top = self, ch = ch, input_range = self.input_range[ch]) for ch in self.channels]
# set parameters common to all channels
for ch in channels:
# trigger timing is in the middle of the screen
self.osc[ch].trigger_pre = self.size//2
self.osc[ch].trigger_post = self.size//2
# default trigger source
self.t_source = 0
# display widgets
self.display()
# threads
self.jobs = bg.BackgroundJobManager()
self.jobs.new('self.run()')
def launch_in_notebook(self, port=9095, width=900, height=600):
"""launch the app within an iframe in ipython notebook"""
from IPython.lib import backgroundjobs as bg
from IPython.display import HTML
jobs = bg.BackgroundJobManager()
jobs.new(self.launch, kw=dict(port=port))
return HTML('<iframe src=http://localhost:{} width={} height={}></iframe>'.format(port,width,height))
def test_flush():
"""Test job control"""
jobs = bg.BackgroundJobManager()
j = jobs.new(sleeper)
j.join()
assert len(jobs.completed) == 1
assert len(jobs.dead) == 0
jobs.flush()
assert len(jobs.completed) == 0
def test_dead():
"""Test control of dead jobs"""
jobs = bg.BackgroundJobManager()
j = jobs.new(crasher)
j.join()
nt.assert_equal(len(jobs.completed), 0)
nt.assert_equal(len(jobs.dead), 1)
jobs.flush()
nt.assert_equal(len(jobs.dead), 0)
def test_dead():
"""Test control of dead jobs"""
jobs = bg.BackgroundJobManager()
j = jobs.new(crasher)
j.join()
assert len(jobs.completed) == 0
assert len(jobs.dead) == 1
jobs.flush()
assert len(jobs.dead) == 0
def test_flush():
"""Test job control"""
jobs = bg.BackgroundJobManager()
j = jobs.new(sleeper)
j.join()
nt.assert_equal(len(jobs.completed), 1)
nt.assert_equal(len(jobs.dead), 0)
jobs.flush()
nt.assert_equal(len(jobs.completed), 0)
def run_script_in_bg(script_path,*args):
"""
Not actually an interaction with the queue, but useful for running
python scripts that send commands to queue (such as pipelines) without
blocking the notebook.
"""
def run_script(sp,args_tup):
magic_statement = 'run ' + sp + ' ' + ' '.join(['"' + a + '"' if ' ' in a else a for a in args_tup])
get_ipython().magic(magic_statement)
jobs = bg.BackgroundJobManager()
jobs.new(run_script,script_path,args)
def test_longer():
"""Test control of longer-running jobs"""
jobs = bg.BackgroundJobManager()
# Sleep for long enough for the following two checks to still report the
# job as running, but not so long that it makes the test suite noticeably
# slower.
j = jobs.new(sleeper, 0.1)
nt.assert_equal(len(jobs.running), 1)
nt.assert_equal(len(jobs.completed), 0)
j.join()
nt.assert_equal(len(jobs.running), 0)
nt.assert_equal(len(jobs.completed), 1)
def _display_from_ipython(self):
# This is a hack using IPython BackgroundJobs
# module. Once we have an IPython2.0 release
# It can be modified to display visualizations
# in IPython output cell itself.
server = Server(json=self.saved_json_file)
jobs = bg.BackgroundJobManager()
jobs.new('server.run()')
print '''
Your visualization is being rendered at
http://localhost:%s/
Opening the visualization in new tab...''' % (server.port)
webbrowser.open("http://localhost:%s/" % server.port)
# and you should call it again with exc=NULL to revert the effect"""
ctypes.pythonapi.PyThreadState_SetAsyncExc(tid, 0)
raise SystemError("PyThreadState_SetAsyncExc failed")
return
class KillableThread(threading.Thread):
def terminate(self):
# must raise the SystemExit type, instead of a SystemExit() instance
# due to a bug in PyThreadState_SetAsyncExc
raise_exception_in_thread(self, SystemExit)
default_job_name = "_measurement"
allow_duplicate_jobs = False
job_manager = bg.BackgroundJobManager()
def active_job() -> Union[bg.BackgroundJobExpr, None]:
"""Return active job.
This job must have been created by `new_job` with kwarg ``active=True``, and
must still be running
Returns:
active job if it exists, else None
"""
try:
return next(job for job in job_manager.running if job.is_active)
except StopIteration:
return None
def test_result():
"""Test job submission and result retrieval"""
jobs = bg.BackgroundJobManager()
j = jobs.new(sleeper)
j.join()
nt.assert_equal(j.result['interval'], t_short)
def show_progress_bars(*jobs):
from IPython.lib import backgroundjobs
bgjobs = backgroundjobs.BackgroundJobManager()
for job in jobs:
bgjobs.new(show_progress_bar, job)
def _run_in_background(fn, *args, **kwargs):
from IPython.lib import backgroundjobs as bg
jobs = bg.BackgroundJobManager()
jobs.new(fn, *args, kw=kwargs)
def remote_command_async(self, command, callback):
from IPython.lib import backgroundjobs as bg
jobs = bg.BackgroundJobManager()
jobs.new(self.remote_command_with_callback, command, callback)
def start(fun):
jobs = bg.BackgroundJobManager()
jobs.new(fun)
return jobs
def __init__(self):
self.simulations = bgjobs.BackgroundJobManager()
from IPython.lib import backgroundjobs as bg
import ipywidgets as widgets
from IPython.display import display
import time
# --------------------------------------
# ---
# --------------------------------------
jobs = bg.BackgroundJobManager()
RUNNING = 0
PAUSED = 1
END = 2
class Game:
gameStatus = RUNNING
state = None
messages = None
def __init__(self, showDisplay = True, updateTime = 0.2):
self.SLEEP_TIME = updateTime
self.display = showDisplay
if self.display:
pauseButton = widgets.Button(description='Run',
disabled=False,
button_style='info',
tooltip='Change game status',
icon='check',
width = '120px')
def test_result():
"""Test job submission and result retrieval"""
jobs = bg.BackgroundJobManager()
j = jobs.new(sleeper)
j.join()
assert j.result["interval"] == t_short
def run_in_background(self):
jobs = backgroundjobs.BackgroundJobManager()
jobs.new(self.run)
def gui_main():
global C
jobs_mf = bg.BackgroundJobManager()
jobs_mf.new(mf.comlistener)
mf.cyclecoms()
mf.startupcommands()
mf.resetaxes()
mf.initialize_sharedvariables()
top = tkinter.Tk()
top.title('Wolffia')
top.geometry("600x600")
top.state('zoomed')
top.update()
w, h = top.winfo_width(), top.winfo_height()
def testCallBack():
text = jog_entry.get()
tkinter.messagebox.showinfo("Hello Python", text)
def update():
x_pos_label_r.config(text=share.x)
def ybuttonp():
text = jog_entry.get()
text = np.absolute(float(text))
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.jog_y(text, speed=speedi)
def ybuttonn():
text = jog_entry.get()
text = np.absolute(float(text))
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.jog_y(-text, speed=speedi)
def xbuttonp():
text = jog_entry.get()
text = np.absolute(float(text))
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.jog_x(text, speed=speedi)
def xbuttonn():
text = jog_entry.get()
text = np.absolute(float(text))
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.jog_x(-text, speed=speedi)
def zbuttonp():
text = jog_entry.get()
text = np.absolute(float(text))
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.jog_z(text, speed=speedi)
def zbuttonn():
text = jog_entry.get()
text = np.absolute(float(text))
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.jog_z(-text, speed=speedi)
def movexbutton():
text = float(movex_entry.get())
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.moveto_x(text, speed=speedi)
def moveybutton():
text = float(movey_entry.get())
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.moveto_y(text, speed=speedi)
def movezbutton():
text = float(movez_entry.get())
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.moveto_z(text, speed=speedi)
def moveallbutton():
textx = float(movex_entry.get())
texty = float(movey_entry.get())
textz = float(movez_entry.get())
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.moveto(textx, texty, textz, speed=speedi)
def close_coms_button_c():
top.destroy()
mf.closecoms()
gui_starter()
def cycle_coms_button_c():
mf.cyclecoms()
mf.startupcommands()
mf.resetaxes()
def resetax_button():
mf.resetaxes()
def movehome_button():
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.moveto(0, 0, 0, speed=speedi)
def imnav_u():
C.yview_scroll(-1, "units")
a = C.yview()
share.picy = int(share.im_full_bbox[3] * a[0])
im_list_creator()
image_creator()
def imnav_d():
C.yview_scroll(1, "units")
a = C.yview()
share.picy = int(share.im_full_bbox[3] * a[0])
im_list_creator()
image_creator()
def imnav_l():
C.xview_scroll(-1, "units")
a = C.xview()
share.picx = int(share.im_full_bbox[2] * a[0])
im_list_creator()
image_creator()
def imnav_r():
C.xview_scroll(1, "units")
a = C.xview()
share.picx = int(share.im_full_bbox[2] * a[0])
im_list_creator()
image_creator()
def dc_move(event):
x = C.canvasx(event.x)
x = (x - share.dispx) / share.im_full_bbox[2]
C.xview_moveto(x)
y = C.canvasy(event.y)
y = (y - share.dispy) / share.im_full_bbox[3]
C.yview_moveto(y)
a = C.xview()
share.picx = int(share.im_full_bbox[2] * a[0])
a = C.yview()
share.picy = int(share.im_full_bbox[3] * a[0])
im_list_creator()
image_creator()
def askdirectory():
share.fnold = share.fn
share.fn = tkinter.filedialog.askopenfilename()
if share.fn != share.fnold:
myh5.initialize_projectfile(share.fn)
share.im_positions, share.im_cent_positions = myh5.get_positions()
share.im_c_list = share.hf.indices
share.im_current_list = []
share.im_current_list_new = []
C.delete('all')
share.imageIDs = []
share.imageIDs2 = np.zeros(10)
C.update()
im_list_creator()
image_creator()
directory_label2_r.config(text=share.fn)
#print('test')
def saveas_directory():
share.fnold = share.fn
share.fn = tkinter.filedialog.asksaveasfilename()
if share.fn != share.fnold:
myh5.initialize_projectfile(share.fn, typer='w')
share.im_positions, share.im_cent_positions = myh5.get_positions()
share.im_c_list = share.hf.indices
share.im_current_list = []
share.im_current_list_new = []
C.delete('all')
share.imageIDs = []
share.imageIDs2 = np.zeros(10)
C.update()
im_list_creator()
image_creator()
directory_label_r.config(text=share.fn)
def scroll_start(event):
C.scan_mark(event.x, event.y)
def scroll_move(event):
C.scan_dragto(event.x, event.y, gain=1)
def scroll_end(event):
a = C.xview()
share.picx = int(share.im_full_bbox[2] * a[0])
a = C.yview()
share.picy = int(share.im_full_bbox[3] * a[0])
C.update()
im_list_creator()
image_creator()
C.update()
def image_creator():
max_im_c = 0
if len(share.im_c_list) != 0:
max_im_c = max(share.im_c_list)
for x in range(1 + max_im_c - len(share.imageIDs)):
share.imageIDs.append([0, 0, 0])
share.imageIDs2 = np.resize(
share.imageIDs2,
len(list(share.hf['imagedata/' +
str(share.zoomlevel)]))).astype('uint64')
for x in range(len(share.im_c_list)):
share.image = np.array(
share.hf['imagedata/' + str(share.zoomlevel) + '/image_' +
str(share.im_c_list[x])])
share.imgtk = mf.np2tk(share.image)
share.imgID = C.create_image(
share.im_positions[share.im_c_list[x]][0],
share.im_positions[share.im_c_list[x]][1],
anchor="nw",
image=share.imgtk)
share.imageIDs[share.im_c_list[x]] = [
share.im_c_list[x], share.imgID, share.imgtk
]
share.imageIDs2[share.im_c_list[x]] = share.imgID
if len(share.im_r_list) != 0:
for x in range(len(share.im_r_list)):
C.delete(share.imageIDs2[share.im_r_list[x]])
share.imageIDs[share.im_r_list[x]] = [0, 0, 0]
share.im_c_list = []
share.im_r_list = []
C.update()
def im_list_creator():
imagenumber = len(list(share.hf['imagedata/' + str(share.zoomlevel)]))
#print(imagenumber)
a = C.xview()[0] * share.im_full_bbox[2] + share.dispx
b = C.yview()[0] * share.im_full_bbox[3] + share.dispy
share.currentposition = [a, b]
#print(share.currentposition)
dist = np.sqrt(
np.sum(((share.im_cent_positions - share.currentposition)**2),
axis=1))
argswhere = (np.argwhere(dist < (share.viewportdims[0] * 1))).flatten()
share.im_current_list_new = argswhere
share.im_c_list = np.setdiff1d(share.im_current_list_new,
share.im_current_list)
#print(share.im_c_list)
share.im_r_list = np.setdiff1d(share.im_current_list,
share.im_current_list_new)
share.im_current_list = share.im_current_list_new
def zoomin():
share.im_current_list = []
share.im_current_list_new = []
if share.zoomlevel > 0:
share.zoomlevel = share.zoomlevel - 1
share.im_positions, share.im_cent_positions = myh5.get_positions()
a = C.xview()
b = a[0] * 2 + share.dispx / share.canvas_bbox[2]
C.xview_moveto(b)
a = C.yview()
b = a[0] * 2 + share.dispy / share.canvas_bbox[3]
C.yview_moveto(b)
zoom_label.config(text=share.zoomlevel)
C.delete('all')
share.imageIDs = []
share.imageIDs2 = np.zeros(10)
C.update()
im_list_creator()
image_creator()
C.update()
def zoomout():
share.im_current_list = []
share.im_current_list_new = []
if share.zoomlevel < 9:
share.zoomlevel = share.zoomlevel + 1
share.im_positions, share.im_cent_positions = myh5.get_positions()
a = C.xview()
b = (a[0] - share.dispx / share.canvas_bbox[2]) / 2
C.xview_moveto(b)
a = C.yview()
b = (a[0] - share.dispy / share.canvas_bbox[3]) / 2
C.yview_moveto(b)
C.delete('all')
share.imageIDs = []
share.imageIDs2 = np.zeros(10)
zoom_label.config(text=share.zoomlevel)
C.update()
im_list_creator()
image_creator()
def trigger():
share.pixelsize = pixel_size_ent.get()
image, filename = mf.get_newimage()
myh5.insert_single_image(image, filename)
share.im_positions, share.im_cent_positions = myh5.get_positions()
im_list_creator()
image_creator()
C.update()
def mult_trigger():
number = mult_trigger_ent.get()
number = np.absolute(int(number))
mf.multitrigger(n=number)
def scan_area():
share.pixelsize = float(pixel_size_ent.get())
image, filename = mf.get_newimage()
#print("filename: ", filename)
filenumber = filename.split('\\')
filenumber = filenumber[-1]
filenumber = filenumber.split('.')[0].split('_')[1]
filenumber = int(filenumber)
#print("filenumber: ", filenumber)
share.current_imagename = filename
del share.todo_dict[filename]
share.fov[0] = image.shape[1] * share.pixelsize
share.fov[1] = image.shape[0] * share.pixelsize
share.scanbound[0] = [define_entry_tl.get(), define_entry_tr.get()]
share.scanbound[1] = [define_entry_bl.get(), define_entry_br.get()]
mf.create_scanlist()
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
share.scanjob = jobs_mf.new(mf.scan_area,
kw=dict(speedf=speedi,
largestind=filenumber))
#print('test',str(share.scanjob.finished))
while share.scanjob.finished == False:
x = 0
y = 0
time.sleep(0.1)
filenames = list(share.todo_dict.keys())
#print(filenames)
for x in range(len(filenames)):
while y == 0:
#print(x,filenames[x])
try:
imagedata = skimage.io.imread(filenames[x])
os.remove(filenames[x])
y = 1
#print(y)
except:
y = 0
#print(y)
if correct_images.get() == True:
if (share.image_corrector == 0).all() != True:
imagedata = imagedata / share.image_corrector
imagedata = np.clip((imagedata * 200), 0,
255).astype('uint8')
myh5.insert_single_image(imagedata, filenames[x])
y = 0
job_label.config(text=str(share.scanjob.finished))
im_list_creator()
image_creator()
frame1.update()
filenames = list(share.todo_dict.keys())
x = 0
for x in range(len(filenames)):
while y == 0:
try:
imagedata = skimage.io.imread(filenames[x])
os.remove(filenames[x])
y = 1
except:
y = 0
if correct_images.get() == True:
if (share.image_corrector == 0).all() != True:
imagedata = imagedata / share.image_corrector
imagedata = np.clip((imagedata * 200), 0,
255).astype('uint8')
myh5.insert_single_image(imagedata, filenames[x])
im_list_creator()
image_creator()
#share.hfjob=jobs_mf.new(mf.cleanup)
speedi = speed_entry.get()
speedi = np.absolute(float(speedi))
mf.moveto(0, 0, 0, speed=speedi)
def af_g_nomove():
currentx = share.x
currenty = share.y
currentz = share.z
speedi = speed_entry.get()
speedi = float(speedi)
mf.autofocus([currentx, currenty],
zstart=currentz - 10,
zend=currentz + 10,
number=10,
speeda=speedi)
def closehf():
myh5.closeproj()
def load_imagecorrector():
filename = tkinter.filedialog.askopenfilename()
share.image_corrector = skimage.io.imread(filename)
#Declare Variables
correct_images = tkinter.BooleanVar()
frame1 = tkinter.Frame(top, relief="raised", borderwidth=3, padx=10)
frame1.place(x=5, y=5, height=h - 10, width=450)
UP = tkinter.Button(frame1, text="Y+", command=ybuttonp, width='10')
UP.grid(row=0, column=2, pady=10, sticky='we')
LEFT = tkinter.Button(frame1, text="X-", command=xbuttonn)
LEFT.grid(row=1, column=1, pady=10, sticky='we')
RIGHT = tkinter.Button(frame1, text="X+", command=xbuttonp, width='10')
RIGHT.grid(row=1, column=3, pady=10, sticky='we')
DOWN = tkinter.Button(frame1, text="Y-", command=ybuttonn)
DOWN.grid(row=2, column=2, pady=10, sticky='we')
Zp = tkinter.Button(frame1, text="Z+", command=zbuttonp)
Zp.grid(row=0, column=0, pady=10, sticky='we')
Zn = tkinter.Button(frame1, text="Z-", command=zbuttonn)
Zn.grid(row=2, column=0, pady=10, sticky='we')
jog_entry_label = tkinter.Label(frame1, text='Jog Amount:')
jog_entry_label.grid(row=5, column=0)
jog_entry = tkinter.Entry(frame1, width='10')
jog_entry.insert(0, '10')
jog_entry.grid(row=5, column=1)
speed_entry_label = tkinter.Label(frame1, text='Speed:')
speed_entry_label.grid(row=5, column=2)
speed_entry = tkinter.Entry(frame1, width='10')
speed_entry.insert(0, '500')
speed_entry.grid(row=5, column=3)
frame1.grid_rowconfigure(6, minsize=15)
movex_entry_label = tkinter.Label(frame1, text='Move X to:')
movex_entry_label.grid(row=7, column=0)
movex_entry = tkinter.Entry(frame1, width='10')
movex_entry.insert(0, '0')
movex_entry.grid(row=7, column=1)
movex_button = tkinter.Button(frame1, text="X", command=movexbutton)
movex_button.grid(row=7, column=2, sticky='we')
movey_entry_label = tkinter.Label(frame1, text='Move Y to:')
movey_entry_label.grid(row=8, column=0)
movey_entry = tkinter.Entry(frame1, width='10')
movey_entry.insert(0, '0')
movey_entry.grid(row=8, column=1)
movey_button = tkinter.Button(frame1, text="Y", command=moveybutton)
movey_button.grid(row=8, column=2, sticky='we')
movez_entry_label = tkinter.Label(frame1, text='Move Z to:')
movez_entry_label.grid(row=9, column=0)
movez_entry = tkinter.Entry(frame1, width='10')
movez_entry.insert(0, '0')
movez_entry.grid(row=9, column=1)
movez_button = tkinter.Button(frame1, text="Z", command=movezbutton)
movez_button.grid(row=9, column=2, sticky='we')
moveall_button = tkinter.Button(frame1,
text="Move\nAll",
command=moveallbutton,
width=10)
moveall_button.grid(row=7, column=3, sticky='nswe', rowspan='3')
frame1.grid_rowconfigure(10, minsize=15)
x_pos_label = tkinter.Label(frame1, text='X Position:')
x_pos_label.grid(row=11, column=0)
x_pos_label_r = tkinter.Label(frame1, text=share.x)
x_pos_label_r.grid(row=11, column=1)
y_pos_label = tkinter.Label(frame1, text='Y Position:')
y_pos_label.grid(row=12, column=0)
y_pos_label_r = tkinter.Label(frame1, text=share.y)
y_pos_label_r.grid(row=12, column=1)
z_pos_label = tkinter.Label(frame1, text='Z Position:')
z_pos_label.grid(row=13, column=0)
z_pos_label_r = tkinter.Label(frame1, text=share.z)
z_pos_label_r.grid(row=13, column=1)
frame1.grid_rowconfigure(14, minsize=15)
coms_label = tkinter.Label(frame1, text='Com Interface:')
coms_label.grid(row=15, column=0)
close_coms_button = tkinter.Button(frame1,
text="Close Coms",
command=close_coms_button_c)
close_coms_button.grid(row=16, column=0, padx=10, sticky='we')
cycle_coms_button = tkinter.Button(frame1,
text="Cycle Coms",
command=cycle_coms_button_c)
cycle_coms_button.grid(row=16, column=1, padx=10, sticky='we')
frame1.grid_rowconfigure(17, minsize=15)
axes_control_label = tkinter.Label(frame1, text='Axes Control:')
axes_control_label.grid(row=15, column=2)
axes_control_button = tkinter.Button(frame1,
text="Move Home",
command=movehome_button)
axes_control_button.grid(row=16, column=2, padx=2, sticky='we')
axes_control_button2 = tkinter.Button(frame1,
text="Define Home",
command=resetax_button)
axes_control_button2.grid(row=16, column=3, padx=2, sticky='we')
# ut_port=tkinter.Label(frame1,text=str(share.picx),width='10',anchor='w')
# ut_port.grid(row=17,column=0)
# ut_port2=tkinter.Label(frame1,text=str(share.picy),width='10',anchor='w')
# ut_port2.grid(row=17,column=1)
frame2 = tkinter.Frame(top, relief="raised", borderwidth=3)
frame2.place(x=460, y=5, height=(h - 10), width=(w - 465))
directory_label = tkinter.Label(frame1,
text='Select Project File:',
anchor='w')
directory_label.grid(row=17, column=0, columnspan='2')
directory_button = tkinter.Button(frame1,
text='Open',
command=askdirectory,
width='10')
directory_button.grid(row=18, column=0)
directory_label_r = tkinter.Label(frame1,
text=share.fn,
anchor='w',
width=30)
directory_label_r.grid(row=18, column=1, columnspan='3')
directory_button2 = tkinter.Button(frame1,
text='Save As',
command=saveas_directory,
width='10')
directory_button2.grid(row=19, column=0)
directory_label2_r = tkinter.Label(frame1,
text=share.fn,
anchor='w',
width=30)
directory_label2_r.grid(row=19, column=1, columnspan='3')
trigger_b = tkinter.Button(frame1,
text='Trigger',
command=trigger,
width='10')
trigger_b.grid(row=20, column=0)
mult_trigger_b = tkinter.Button(frame1,
text='Multi Trig',
command=mult_trigger,
width='10')
mult_trigger_b.grid(row=21, column=0)
mult_trigger_ent = tkinter.Entry(frame1, width='10')
mult_trigger_ent.insert(0, '10')
mult_trigger_ent.grid(row=21, column=1)
pixel_size_label = tkinter.Label(frame1,
text='Pix Size/um',
anchor='w',
width=10)
pixel_size_label.grid(row=21, column=2)
pixel_size_ent = tkinter.Entry(frame1, width='10')
pixel_size_ent.insert(0, '0.005')
pixel_size_ent.grid(row=21, column=3)
define_label = tkinter.Label(frame1,
text='Def Bounds',
anchor='w',
width=10)
define_label.grid(row=22, column=0)
define_entry_tl = tkinter.Entry(frame1, width='10')
define_entry_tl.insert(0, '0')
define_entry_tl.grid(row=23, column=0)
define_entry_tr = tkinter.Entry(frame1, width='10')
define_entry_tr.insert(0, '0')
define_entry_tr.grid(row=23, column=1)
define_entry_bl = tkinter.Entry(frame1, width='10')
define_entry_bl.insert(0, '0')
define_entry_bl.grid(row=24, column=0)
define_entry_br = tkinter.Entry(frame1, width='10')
define_entry_br.insert(0, '0')
define_entry_br.grid(row=24, column=1)
scan_area_b = tkinter.Button(frame1,
text='Scan Area',
command=scan_area,
width='10')
scan_area_b.grid(row=23, column=2)
close_hfile = tkinter.Button(frame1, text="Close P File", command=closehf)
close_hfile.grid(row=24, column=2, padx=2, sticky='we')
job_label = tkinter.Label(frame1,
text=str(share.scanjob),
anchor='w',
width=10)
job_label.grid(row=25, column=0)
af_button = tkinter.Button(frame1, text="Autofocus", command=af_g_nomove)
af_button.grid(row=26, column=0, padx=2, sticky='we')
corrector_load = tkinter.Button(frame1,
text="Im Corrector",
command=load_imagecorrector)
corrector_load.grid(row=26, column=1, padx=2, sticky='we')
#corrector_label=tkinter.Label(frame1,text='Use Corrector:')
#corrector_label.grid(row=26,column=2)
corrector_checkbox = tkinter.Checkbutton(frame1,
variable=correct_images,
text='Use Correct?',
onvalue=True,
offvalue=False)
corrector_checkbox.grid(row=26, column=2)
frame1.columnconfigure(1, weight=0)
frame1.update()
frame2.update()
f2w, f2h = frame2.winfo_width(), frame2.winfo_height()
C = tkinter.Canvas(frame2,
bg="blue",
height=(f2h - 50),
width=(f2w - 20),
relief="raised",
borderwidth=1,
scrollregion=(0, 0, share.im_full_bbox[2],
share.im_full_bbox[3]))
C.grid(row=0, columnspan=10, padx=5, pady=5)
C.update()
Cw, Ch = C.winfo_width(), C.winfo_height()
share.viewportdims = [Cw, Ch]
share.dispx = int(Cw / 2)
share.dispy = int(Ch / 2)
C.bind("<ButtonPress-1>", scroll_start)
C.bind("<B1-Motion>", scroll_move)
C.bind("<ButtonRelease-1>", scroll_end)
c_px, c_py = C.winfo_pointerxy()
tlx = C.winfo_rootx()
tly = C.winfo_rooty()
transx = tlx + share.dispx
transy = tly + share.dispy
C.bind('<Double-1>', dc_move)
mousex_label = tkinter.Label(frame2, text='X:')
mousex_label.grid(row=1, column=0)
mousex_label_val = tkinter.Label(frame2, text=c_px - transx + share.picx)
mousex_label_val.grid(row=1, column=1)
mousey_label = tkinter.Label(frame2, text='Y:')
mousey_label.grid(row=1, column=2)
mousey_label_val = tkinter.Label(frame2, text=c_py - transy + share.picy)
mousey_label_val.grid(row=1, column=3)
mousez_label = tkinter.Label(frame2, text='Z:')
mousez_label.grid(row=1, column=4)
mousez_label_val = tkinter.Label(frame2, text=share.z)
mousez_label_val.grid(row=1, column=5)
moveim_b_u = tkinter.Button(C, text="up", command=imnav_u)
moveim_b_u.place(x=Cw - 95, y=Ch - 70, anchor="sw", width=40)
moveim_b_d = tkinter.Button(C, text="down", command=imnav_d)
moveim_b_d.place(x=Cw - 95, y=Ch - 20, anchor="sw", width=40)
moveim_b_l = tkinter.Button(C, text="left", command=imnav_l)
moveim_b_l.place(x=Cw - 140, y=Ch - 45, anchor="sw", width=40)
moveim_b_r = tkinter.Button(C, text="right", command=imnav_r)
moveim_b_r.place(x=Cw - 50, y=Ch - 45, anchor="sw", width=40)
zoomin_b = tkinter.Button(C, text="in", command=zoomin)
zoomin_b.place(x=40, y=Ch - 120, anchor='center', width=40)
zoomout_b = tkinter.Button(C, text="out", command=zoomout)
zoomout_b.place(x=40, y=Ch - 40, anchor='center', width=40)
zoom_label = tkinter.Label(C, text=share.zoomlevel, bg='white')
zoom_label.place(x=40, y=Ch - 80, anchor='center', width=40)
a = C.xview()
def clock():
share.correct_images = correct_images.get()
x_pos_label_r.config(text=share.x)
y_pos_label_r.config(text=share.y)
z_pos_label_r.config(text=share.z)
c_px, c_py = C.winfo_pointerxy()
# mousex_label_val.config(text=c_px-transx+share.picx)
# mousey_label_val.config(text=c_py-transy+share.picy)
mousex_label_val.config(text=c_px - tlx + share.picx)
mousey_label_val.config(text=c_py - tly + share.picy)
moveim_b_l.config(command=imnav_l)
moveim_b_r.config(command=imnav_r)
moveim_b_u.config(command=imnav_u)
moveim_b_d.config(command=imnav_d)
share.pixelsize = float(pixel_size_ent.get())
# ut_port.config(text=('X: '+ str(share.picx)))
# ut_port2.config(text=('Y: '+ str(share.picx)))
frame1.after(100, clock)
clock()
top.mainloop()