def test13():
format = optimize.optimize(Expression.Any("A") + \
Expression.Any("B") + \
Expression.Any("C") + \
((Expression.Any("D") + \
Expression.Any("E")) + \
Expression.Any("F")))
assert format.string == "ABCDEF"
def test16():
format = optimize.optimize(Str("A") + Expression.Literal("B"))
assert format.string == "AB"
def test14():
format = optimize.optimize(Str("A") + Expression.Any("B", invert=1))
assert isinstance(format, Expression.Seq)
def test12():
format = optimize.optimize(Str("A") + Expression.Any("B"))
assert format.string == "AB"
def test18():
format = optimize.optimize(
Group(None, Group(None, Str("A") + Str("B")) + Str("C")) + \
Group(None, Str("D") + Expression.Any("E") + \
Group(None, Str("FG") + Str("H")) + Group(None, Str("I"))))
assert format.string == "ABCDEFGHI"
blank_space + Str( "reactions" ) + ToEol() )
branch_metabolite = Group(
"branch_metabolite", optional_blank_space + Rep1(AnyBut(white_space)) +
blank_space + RepN(Digits() + blank_space, 3) + Rep1(Any("ir")) + ToEol())
non_branch_metabolite = Group(
"non_branch_metabolite", optional_blank_space + Rep1(AnyBut(white_space)) +
blank_space + RepN(Digits() + blank_space, 3) + Rep1(Any("ir")) + ToEol())
branch_metabolite_block = Group( "branch_metabolite_block", \
metabolite_roles_heading +
metabolite_role_cols + Rep( branch_metabolite ) )
non_branch_metabolite_block = Group( "non_branch_metabolite_block", \
metabolite_roles_heading +
metabolite_role_cols + Rep( non_branch_metabolite ) )
end_stoichiometric = Group( "end_stochiometric", \
Rep( Expression.Assert( not_balanced_tag, 1 ) +
Expression.Assert( kernel_tag, 1 ) + ToEol() ) )
end_not_balanced = Group( "end_not_balanced", \
Rep( Expression.Assert( kernel_tag, 1 ) + ToEol() ) )
end_kernel = Group( "end_kernel", \
Rep( Expression.Assert( subsets_tag, 1 ) + ToEol() ) )
end_subsets = Group( "end_subsets", \
Rep( Expression.Assert( reduced_system_tag, 1 ) + ToEol() ) )
end_reduced_system = Group( "end_reduced_system", \
Rep( Expression.Assert( convex_basis_tag, 1 ) + ToEol() ) )
end_convex_basis = Group( "end_convex_basis", \
Rep( Expression.Assert( conservation_relations_tag, 1 ) + ToEol() ) )
end_conservation_relations = Group( "end_conservation_relations", \
Rep( Expression.Assert( elementary_modes_tag, 1 ) + ToEol() ) )
end_elementary_modes = Group("end_elementary_modes", Rep(ToEol()))
# Rep1( AnyBut( '.') ) + Str( "." ) )