def getPairsFromAlignment(self):
""" This is where we want to figure out the selection
"""
refCount=0
mobCount=0
refResidues = self.vf.expandNodes(self.refMolName)[0].children.children
mobResidues = self.vf.expandNodes(self.mobMolName)[0].children.children
refNodes = ResidueSet()
mobNodes = ResidueSet()
#get the item no's for each sequence
refItems = self.vf.alnEditor.canvas.find_withtag(self.refMolName)
mobItems = self.vf.alnEditor.canvas.find_withtag(self.mobMolName)
for x in range(len(refItems)):
ref = self.vf.alnEditor.canvas.itemcget(refItems[x],'text')
mob = self.vf.alnEditor.canvas.itemcget(mobItems[x],'text')
if ref.isalpha():
refRes = refResidues[refCount]
refCount=refCount+1
if mob.isalpha():
mobRes = mobResidues[mobCount]
mobCount=mobCount+1
refTags = self.vf.alnEditor.canvas.gettags(refItems[x])
mobTags = self.vf.alnEditor.canvas.gettags(mobItems[x])
if 'selected' in mobTags and 'selected' in refTags:
if ref.isalpha() and mob.isalpha():
refNodes.append(refRes)
mobNodes.append(mobRes)
print len(refNodes),len(mobNodes),refNodes[0],mobNodes[0]
#return refNodes,mobNodes
apply(self.vf.superimposeAtomsGC.doitWrapper, (refNodes,), {'log':0})
apply(self.vf.superimposeAtomsGC.doitWrapper, (mobNodes,), {'log':0})
self.vf.superimposeAtomsGC.typeVar.set('By Picking')
def getPairsFromAlignment(self):
""" This is where we want to figure out the selection
"""
refCount=0
mobCount=0
refResidues = self.vf.expandNodes(self.refMolName)[0].children.children
mobResidues = self.vf.expandNodes(self.mobMolName)[0].children.children
refNodes = ResidueSet()
mobNodes = ResidueSet()
#get the item no's for each sequence
refItems = self.vf.alnEditor.canvas.find_withtag(self.refMolName)
mobItems = self.vf.alnEditor.canvas.find_withtag(self.mobMolName)
for x in range(len(refItems)):
ref = self.vf.alnEditor.canvas.itemcget(refItems[x],'text')
mob = self.vf.alnEditor.canvas.itemcget(mobItems[x],'text')
if ref.isalpha():
refRes = refResidues[refCount]
refCount=refCount+1
if mob.isalpha():
mobRes = mobResidues[mobCount]
mobCount=mobCount+1
refTags = self.vf.alnEditor.canvas.gettags(refItems[x])
mobTags = self.vf.alnEditor.canvas.gettags(mobItems[x])
if 'selected' in mobTags and 'selected' in refTags:
if ref.isalpha() and mob.isalpha():
refNodes.append(refRes)
mobNodes.append(mobRes)
print len(refNodes),len(mobNodes),refNodes[0],mobNodes[0]
#return refNodes,mobNodes
apply(self.vf.superimposeAtomsGC.doitWrapper, (refNodes,), {'log':0})
apply(self.vf.superimposeAtomsGC.doitWrapper, (mobNodes,), {'log':0})
self.vf.superimposeAtomsGC.typeVar.set('By Picking')
