Ejemplo n.º 1
0
 def test_workspace_list_objects_iterator(self):
     ws_name = self.__class__.example_ws_name
     part_size = 10
     ws_info = self.getWsClient().get_workspace_info({'workspace': ws_name})
     max_obj_count = ws_info[4]
     min_obj_id = 1
     obj_count = 0
     while min_obj_id <= max_obj_count:
         max_obj_id = min_obj_id + 10000 - 1
         part = self.getWsClient().list_objects({'workspaces': [ws_name],
                                                 'minObjectID': min_obj_id,
                                                 'maxObjectID': max_obj_id})
         obj_count += len(part)
         min_obj_id += 10000
     obj_count2 = 0
     for info in WorkspaceListObjectsIterator(self.getWsClient(), ws_info_list=[ws_info],
                                              part_size=part_size):
         self.assertEqual(11, len(info))
         obj_count2 += 1
     self.assertEqual(obj_count, obj_count2)
Ejemplo n.º 2
0
    def _list_objects_with_sets(self, workspaces, types, include_metadata):
        type_map = None
        if types is not None:
            type_map = {key: True for key in types}

        processed_refs = {}
        data = []
        if self.DEBUG:
            print("NarrativeManager._list_objects_with_sets: processing sets")
        t1 = time.time()
        set_ret = self.set_api_cache.call_method(
            "list_sets", [{
                'workspaces': workspaces,
                'include_set_item_info': 1,
                'include_raw_data_palettes': 1,
                'include_metadata': include_metadata
            }], self.token)
        sets = set_ret['sets']
        dp_data = set_ret.get('raw_data_palettes')
        dp_refs = set_ret.get('raw_data_palette_refs')
        for set_info in sets:
            # Process
            target_set_items = []
            for set_item in set_info['items']:
                target_set_items.append(set_item['info'])
            if self._check_info_type(set_info['info'], type_map):
                data_item = {
                    'object_info': set_info['info'],
                    'set_items': {
                        'set_items_info': target_set_items
                    }
                }
                data.append(data_item)
                processed_refs[set_info['ref']] = data_item
        if self.DEBUG:
            print("    (time=" + str(time.time() - t1) + ")")

        if self.DEBUG:
            print("NarrativeManager._list_objects_with_sets: loading ws_info")
        t2 = time.time()
        ws_info_list = []
        #for ws in workspaces:
        if len(workspaces) == 1:
            ws = workspaces[0]
            ws_id = None
            ws_name = None
            if str(ws).isdigit():
                ws_id = int(ws)
            else:
                ws_name = str(ws)
            ws_info_list.append(
                self.ws.get_workspace_info({
                    "id": ws_id,
                    "workspace": ws_name
                }))
        else:
            ws_map = {key: True for key in workspaces}
            for ws_info in self.ws.list_workspace_info({'perm': 'r'}):
                if ws_info[1] in ws_map or str(ws_info[0]) in ws_map:
                    ws_info_list.append(ws_info)
        if self.DEBUG:
            print("    (time=" + str(time.time() - t2) + ")")

        if self.DEBUG:
            print(
                "NarrativeManager._list_objects_with_sets: loading workspace objects"
            )
        t3 = time.time()
        for info in WorkspaceListObjectsIterator(
                self.ws,
                ws_info_list=ws_info_list,
                list_objects_params={'includeMetadata': include_metadata}):
            item_ref = str(info[6]) + '/' + str(info[0]) + '/' + str(info[4])
            if item_ref not in processed_refs and self._check_info_type(
                    info, type_map):
                data_item = {'object_info': info}
                data.append(data_item)
                processed_refs[item_ref] = data_item
        if self.DEBUG:
            print("    (time=" + str(time.time() - t3) + ")")

        if self.DEBUG:
            print(
                "NarrativeManager._list_objects_with_sets: processing DataPalettes"
            )
        t5 = time.time()
        if dp_data is None or dp_refs is None:
            dps = self.dps_cache
            dp_ret = dps.call_method("list_data",
                                     [{
                                         'workspaces': workspaces,
                                         'include_metadata': include_metadata
                                     }], self.token)
            dp_data = dp_ret['data']
            dp_refs = dp_ret['data_palette_refs']
        for item in dp_data:
            ref = item['ref']
            if self._check_info_type(item['info'], type_map):
                data_item = None
                if ref in processed_refs:
                    data_item = processed_refs[ref]
                else:
                    data_item = {'object_info': item['info']}
                    processed_refs[ref] = data_item
                    data.append(data_item)
                dp_info = {}
                if 'dp_ref' in item:
                    dp_info['ref'] = item['dp_ref']
                if 'dp_refs' in item:
                    dp_info['refs'] = item['dp_refs']
                data_item['dp_info'] = dp_info
        if self.DEBUG:
            print("    (time=" + str(time.time() - t5) + ")")
        return {"data": data, 'data_palette_refs': dp_refs}
Ejemplo n.º 3
0
    def copy_narrative(self, newName, workspaceRef, workspaceId):
        time_ms = int(round(time.time() * 1000))
        newWsName = self.user_id + ':narrative_' + str(time_ms)
        # add the 'narrative' field to newWsMeta later.
        newWsMeta = {"is_temporary": "false", "narrative_nice_name": newName}

        # start with getting the existing narrative object.
        currentNarrative = self.ws.get_objects([{'ref': workspaceRef}])[0]
        if not workspaceId:
            workspaceId = currentNarrative['info'][6]
        # Let's prepare exceptions for clone the workspace.
        # 1) currentNarrative object:
        excluded_list = [{'objid': currentNarrative['info'][0]}]
        # 2) let's exclude objects of types under DataPalette handling:
        data_palette_type = "DataPalette.DataPalette"
        excluded_types = [data_palette_type]
        excluded_types.extend(self.DATA_PALETTES_TYPES.keys())
        add_to_palette_list = []
        dp_detected = False
        for obj_type in excluded_types:
            list_objects_params = {'type': obj_type}
            if obj_type == data_palette_type:
                list_objects_params['showHidden'] = 1
            for info in WorkspaceListObjectsIterator(
                    self.ws,
                    ws_id=workspaceId,
                    list_objects_params=list_objects_params):
                if obj_type == data_palette_type:
                    dp_detected = True
                else:
                    add_to_palette_list.append({
                        'ref':
                        str(info[6]) + '/' + str(info[0]) + '/' + str(info[4])
                    })
                excluded_list.append({'objid': info[0]})
        # clone the workspace EXCEPT for currentNarrative object + obejcts of DataPalette types:
        newWsId = self.ws.clone_workspace({
            'wsi': {
                'id': workspaceId
            },
            'workspace': newWsName,
            'meta': newWsMeta,
            'exclude': excluded_list
        })[0]
        try:
            if dp_detected:
                self.dps_cache.call_method(
                    "copy_palette", [{
                        'from_workspace': str(workspaceId),
                        'to_workspace': str(newWsId)
                    }], self.token)
            if len(add_to_palette_list) > 0:
                # There are objects in source workspace that have type under DataPalette handling
                # but these objects are physically stored in source workspace rather that saved
                # in DataPalette object. So they weren't copied by "dps.copy_palette".
                self.dps_cache.call_method("add_to_palette",
                                           [{
                                               'workspace': str(newWsId),
                                               'new_refs': add_to_palette_list
                                           }], self.token)

            # update the ref inside the narrative object and the new workspace metadata.
            newNarMetadata = currentNarrative['info'][10]
            newNarMetadata['name'] = newName
            newNarMetadata['ws_name'] = newWsName
            newNarMetadata['job_info'] = json.dumps({
                'queue_time': 0,
                'running': 0,
                'completed': 0,
                'run_time': 0,
                'error': 0
            })

            currentNarrative['data']['metadata']['name'] = newName
            currentNarrative['data']['metadata']['ws_name'] = newWsName
            currentNarrative['data']['metadata']['job_ids'] = {
                'apps': [],
                'methods': [],
                'job_usage': {
                    'queue_time': 0,
                    'run_time': 0
                }
            }
            # save the shiny new Narrative so it's at version 1
            newNarInfo = self.ws.save_objects({
                'id':
                newWsId,
                'objects': [{
                    'type': currentNarrative['info'][2],
                    'data': currentNarrative['data'],
                    'provenance': currentNarrative['provenance'],
                    'name': currentNarrative['info'][1],
                    'meta': newNarMetadata
                }]
            })
            # now, just update the workspace metadata to point
            # to the new narrative object
            newNarId = newNarInfo[0][0]
            self.ws.alter_workspace_metadata({
                'wsi': {
                    'id': newWsId
                },
                'new': {
                    'narrative': str(newNarId)
                }
            })
            return {'newWsId': newWsId, 'newNarId': newNarId}
        except:
            # let's delete copy of workspace so it's out of the way - it's broken
            self.ws.delete_workspace({'id': newWsId})
            raise  # continue raising previous exception