def write_current_primers(self,filename='current_order.txt'):
"""Write currently selected primers to a space-delimited file
This is formatted to be uploaded to the MGW website for ordering"""
if not filename:
print 'no filename given'
return
if not self.primers.curselection():
print 'primer database is empty or no selection'
return
# Get currently selected primers into a list
tmp_selection=self.primers.curselection()
selection=[]
for num in tmp_selection:
selection.append(int(num))
primers={}
first=1
# Now figure out the selected primers and store them in primers
for primer_num in selection:
name_selected=self.primer_order[primer_num]
primers[name_selected]=self.parent.data['primer_dict'][name_selected]
#fd=open(filename,'wb')
self.DumpPDB = []
import mutation
for entry in primers:
tmp = []
tmp.append(entry+'_for')
tmp.append(' ')
tmp.append(primers[entry]['sequence'])
reverse=mutation.get_reverse_complementary(primers[entry]['sequence'])
tmp.append('\n')
tmp.append(entry+'_rev')
tmp.append(' ')
tmp.append(reverse)
tmp.append('\n')
self.DumpPDB.append(tmp)
try:
fd=open(filename,'a')
for line in self.DumpPDB:
str = ''
for S in line:
str = str+S
fd.write(str+'\n')
fd.close()
print "File written ",filename
except:
print "error: could not write file ",filename
from PEATDB.textFrame import textFrame
self.order_frame = textFrame(self, 'Current primers')
self.order_frame.load_text(self.DumpPDB)
fd.close()
return
def editConfigFile(self):
"""Edit config file"""
from PEATDB.textFrame import textFrame
tf = textFrame(parent=self.mainwin, title='PEATSA Conf file')
tf.load_from_file(self.confpath)
self.parent.wait_window(tf.frame)
#reconnect
configuration = Core.Environment.Configuration(filename=self.confpath)
self.connect(configuration)
return
def editConfigFile(self):
"""Edit config file"""
from PEATDB.textFrame import textFrame
tf = textFrame(parent=self.mainwin,
title='PEATSA Conf file')
tf.load_from_file(self.confpath)
self.parent.wait_window(tf.frame)
#reconnect
configuration = Core.Environment.Configuration(filename=self.confpath)
self.connect(configuration)
return
