def __init__(self, parent=None, parentframe=None, DB=None, mode=None):
"""Instantiate class and check presence of DB data"""
self.parent = parent
if not self.parent:
Frame.__init__(self)
self.main = self.master
self.main.title('PEAT Comparator')
if DB == None:
DB = self.openDB()
if DB == None: return
elif parentframe:
self.main = Frame(master=parentframe)
self.main.pack(fill=BOTH)
else:
self.main = Toplevel()
self.main.title('Select Dataset')
self.main.geometry('+300+200')
if not self.parent:
from Prefs import Preferences
self.preferences = Preferences('PEAT', {})
else:
self.preferences = self.parent.preferences
self.DB = DB
self.Opt = Options(redraw=None)
self.doGUI()
return
def savePrefs(self):
"""Save prefs to a preferences instance"""
self.applyPrefs(self.prefsdialog.getValues())
self.preferences = Preferences('DNATool2', {})
for key in self.defaultprefs:
self.preferences.set(key, self.__dict__[key])
return
def loadPrefs(self):
"""Load prefs from a preferences instance"""
self.preferences = Preferences('DNATool2', {})
temp = {}
for key in self.defaultprefs:
if not key in self.preferences.prefs:
self.preferences.set(key, self.defaultprefs[key])
temp[key] = self.preferences.get(key)
self.applyPrefs(temp)
return
def __init__(self, parent=None, data=None, datafile=None):
"Initialize the application."
self.parent = parent
#If there is data to be loaded, show the dialog first
if not self.parent:
Frame.__init__(self)
self.tablesapp_win = self.master
else:
self.tablesapp_win = Toplevel()
# Get platform into a variable
import platform
self.currplatform = platform.system()
if not hasattr(self, 'defaultsavedir'):
self.defaultsavedir = os.getcwd()
self.preferences = Preferences('TablesApp', {'check_for_update': 1})
self.loadprefs()
self.tablesapp_win.title('Tables Application')
self.tablesapp_win.geometry('+200+200')
self.x_size = 800
self.y_size = 600
self.createMenuBar()
self.apptoolBar = ToolBar(self.tablesapp_win, self)
self.apptoolBar.pack(fill=BOTH, expand=NO)
#add find bar
#self.createSearchBar()
if data != None:
self.data = data
self.new_project(data)
elif datafile != None:
self.open_project(datafile)
else:
self.new_project()
self.tablesapp_win.protocol('WM_DELETE_WINDOW', self.quit)
return
def __init__(self,
parent=None,
peatinfo=None,
title=None,
data=None,
imgfile=None):
"Initialize the application."
self.parent = parent
#If there is data to be loaded, show the dialog first
if not self.parent:
Frame.__init__(self)
self.pilwin = self.master
self.peatinfo = None
else:
self.pilwin = Toplevel()
#self.peatinfo=peatinfo #reference to peat protein/field
if title != None:
self.title = 'imgviewer_' + title
else:
self.title = 'PIL Image Viewer'
self.pilwin.title(self.title)
import platform
self.currplatform = platform.system()
if not hasattr(self, 'defaultsavedir'):
self.defaultsavedir = os.getcwd()
self.preferences = Preferences('PILViewer', {'check_for_update': 1})
self.pilwin.geometry('+200+100')
self.currentimage = None
self.setupGUI()
if imgfile != None:
self.openFile(imgfile)
elif data != None:
self.currentimage = Image.frombuffer('RGB', (100, 100), data,
"raw", 'RGB', 0, 1)
self.updateCanvas()
return
def __init__(self,
parent=None,
peatinfo=None,
title=None,
data=None,
datafile=None):
"Initialize the application."
self.parent = parent
#If there is data to be loaded, show the dialog first
if self.parent == None:
Frame.__init__(self)
self.labbook_win = self.master
self.peatinfo = None
else:
self.labbook_win = Toplevel()
self.master = self.labbook_win
self.peatinfo = peatinfo #reference to peat protein/field
self.DB = self.parent.DB #ref to peat
if title != None:
self.title = 'subtable_' + title
else:
self.title = 'Labbook Tool'
self.ID = 'Labbook'
# Get platform into a variable
import platform
self.currplatform = platform.system()
if not hasattr(self, 'defaultsavedir'):
self.defaultsavedir = os.getcwd()
self.preferences = Preferences('Labbook', {'check_for_update': 1})
#self.loadprefs()
if self.peatinfo:
protein = self.peatinfo['record']
field_name = self.peatinfo['column']
self.labbook_win.title('Labbook: ' + protein + '_' + field_name)
else:
self.labbook_win.title(self.title)
self.labbook_win.geometry('+200+100')
self.x_size = 1000
self.y_size = 500
self.createMenuBar()
self.apptoolBar = ToolBar(self.labbook_win, self)
self.apptoolBar.pack(fill=BOTH, expand=NO)
#add find bar
#self.createSearchBar()
if data != None:
self.data = data
self.new_project(data)
elif datafile != None:
self.open_project(filename=datafile)
else:
self.new_project()
#add return to main PEAT db button
if self.parent:
Button(self.labbook_win,
text="Return to Database",
command=self.return_data).pack()
self.labbook_win.protocol('WM_DELETE_WINDOW', self.quit)
self.createBindings()
self.clipboard = None
return
def getClustalPath(self):
from Prefs import Preferences
preferences = Preferences('DNATool2', {})
return preferences.get('clustalpath')
