if __name__ == "__main__":
os.environ["TANGO_HOST"] = "l-cryoem-2.esrf.fr:20000"
listFiles = [
"/data/visitor/mx2005/cm01/20171209/RAW_DATA/baseplate-epu-grid2/Images-Disc1/GridSquare_7259648/Data/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925.mrc",
"/data/visitor/mx2005/cm01/20171209/RAW_DATA/baseplate-epu-grid2/Images-Disc1/GridSquare_7259648/Data/process/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925_aligned_mic_DW.mrc",
"/data/visitor/mx2005/cm01/20171209/RAW_DATA/baseplate-epu-grid2/Images-Disc1/GridSquare_7259648/Data/process/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925_aligned_mic.mrc",
"/data/visitor/mx2005/cm01/20171209/RAW_DATA/baseplate-epu-grid2/Images-Disc1/GridSquare_7259648/Data/process/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925/run.log",
"/data/visitor/mx2005/cm01/20171209/RAW_DATA/baseplate-epu-grid2/Images-Disc1/GridSquare_7259648/Data/process/FoilHole_7265309_Data_7264706_7264707_20171207_1704-10925/ctfEstimation.mrc",
]
directory = "/data/visitor/mx2005/cm01/20171209/RAW_DATA/baseplate-epu-grid2"
proposal = "id310001"
sample = "sample1"
dataSetName = "GridSquare_7259648_{0}".format(round(time.time()))
metadataManagerName = "cm01_test/metadata/ingest"
metaExperimentName = "cm01_test/metadata/experiment"
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start(directory, proposal, sample, dataSetName)
for filePath in listFiles:
archivePath = filePath.replace(directory + "/", "")
print(archivePath)
client.appendFile(archivePath)
dictMetadata = {"definition": "EM"}
for attributeName, value in dictMetadata.iteritems():
print("Setting metadata client attribute '{0}' to '{1}'".format(
attributeName, value))
setattr(client.metadataManager, attributeName, str(value))
client.printStatus()
client.end()
else:
motorNames += " " + motorName
motorPositions += " " + str(round(position, 3))
dictMetadata["MX_motors_name"] = motorNames
dictMetadata["MX_motors_value"] = motorPositions
# Detector distance
distance = self.esrf_multi_collect.get_detector_distance()
if distance is not None:
dictMetadata["MX_detectorDistance"] = distance
# Aperture
if self.esrf_multi_collect.bl_control.beam_info is not None and self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj is not None:
aperture = self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj.getPosition(
)
dictMetadata["MX_aperture"] = aperture
return dictMetadata
if __name__ == '__main__':
metadataManagerName = 'id30a1/metadata/ingest'
metaExperimentName = 'id30a1/metadata/experiment'
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start('/data/visitor/mx415/id30a2/20160909/RAW_DATA', 'mx415',
'sample2', 'dataset_20160909_1')
client.appendFile(
'/data/visitor/mx415/id30a2/20160909/RAW_DATA/t1/test1.txt')
client.appendFile(
'/data/visitor/mx415/id30a2/201600909/RAW_DATA/t1/test2.txt')
client.printStatus()
client.end()
distance = self.esrf_multi_collect.get_detector_distance()
if distance is not None:
dictMetadata["MX_detectorDistance"] = distance
# Aperture
if (
self.esrf_multi_collect.bl_control.beam_info is not None
and self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj is not None
):
aperture = (
self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj.getPosition()
)
dictMetadata["MX_aperture"] = aperture
return dictMetadata
if __name__ == "__main__":
metadataManagerName = "id30a1/metadata/ingest"
metaExperimentName = "id30a1/metadata/experiment"
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start(
"/data/visitor/mx415/id30a1/20161014/RAW_DATA",
"mx415",
"sample1",
"dataset_20161014_1",
)
client.appendFile("/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test1.txt")
client.appendFile("/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test2.txt")
client.printStatus()
client.end()
motorNames = motorName
motorPositions = str(round(position, 3))
else:
motorNames += " " + motorName
motorPositions += " " + str(round(position, 3))
dictMetadata["MX_motors_name"] = motorNames
dictMetadata["MX_motors_value"] = motorPositions
# Detector distance
distance = self.esrf_multi_collect.get_detector_distance()
if distance is not None:
dictMetadata["MX_detectorDistance"] = distance
# Aperture
if self.esrf_multi_collect.bl_control.beam_info is not None and self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj is not None:
aperture = self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj.getPosition()
dictMetadata["MX_aperture"] = aperture
return dictMetadata
if __name__ == '__main__':
metadataManagerName = 'id30a1/metadata/ingest'
metaExperimentName = 'id30a1/metadata/experiment'
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start('/data/visitor/mx415/id30a2/20160909/RAW_DATA', 'mx415', 'sample2', 'dataset_20160909_1')
client.appendFile('/data/visitor/mx415/id30a2/20160909/RAW_DATA/t1/test1.txt')
client.appendFile('/data/visitor/mx415/id30a2/201600909/RAW_DATA/t1/test2.txt')
client.printStatus()
client.end()
distance = self.esrf_multi_collect.get_detector_distance()
if distance is not None:
dictMetadata["MX_detectorDistance"] = distance
# Aperture
if (
self.esrf_multi_collect.bl_control.beam_info is not None
and self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj is not None
):
aperture = (
self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj.getPosition()
)
dictMetadata["MX_aperture"] = aperture
return dictMetadata
if __name__ == "__main__":
metadataManagerName = "id30a1/metadata/ingest"
metaExperimentName = "id30a1/metadata/experiment"
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start(
"/data/visitor/mx415/id30a1/20161014/RAW_DATA",
"mx415",
"sample1",
"dataset_20161014_1",
)
client.appendFile("/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test1.txt")
client.appendFile("/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test2.txt")
client.printStatus()
client.end()
motorNames = motorName
motorPositions = str(round(position, 3))
else:
motorNames += " " + motorName
motorPositions += " " + str(round(position, 3))
dictMetadata["MX_motors_name"] = motorNames
dictMetadata["MX_motors_value"] = motorPositions
# Detector distance
distance = self.esrf_multi_collect.get_detector_distance()
if distance is not None:
dictMetadata["MX_detectorDistance"] = distance
# Aperture
if self.esrf_multi_collect.bl_control.beam_info is not None and self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj is not None:
aperture = self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj.getPosition()
dictMetadata["MX_aperture"] = aperture
return dictMetadata
if __name__ == '__main__':
metadataManagerName = 'id30a1/metadata/ingest'
metaExperimentName = 'id30a1/metadata/experiment'
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start('/data/visitor/mx415/id30a1/20161014/RAW_DATA', 'mx415', 'sample1', 'dataset_20161014_1')
client.appendFile('/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test1.txt')
client.appendFile('/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test2.txt')
client.printStatus()
client.end()
else:
motorNames += " " + motorName
motorPositions += " " + str(round(position, 3))
dictMetadata["MX_motors_name"] = motorNames
dictMetadata["MX_motors_value"] = motorPositions
# Detector distance
distance = self.esrf_multi_collect.get_detector_distance()
if distance is not None:
dictMetadata["MX_detectorDistance"] = distance
# Aperture
if self.esrf_multi_collect.bl_control.beam_info is not None and self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj is not None:
aperture = self.esrf_multi_collect.bl_control.beam_info.aperture_hwobj.getPosition(
)
dictMetadata["MX_aperture"] = aperture
return dictMetadata
if __name__ == '__main__':
metadataManagerName = 'id30a1/metadata/ingest'
metaExperimentName = 'id30a1/metadata/experiment'
client = MetadataManagerClient(metadataManagerName, metaExperimentName)
client.start('/data/visitor/mx415/id30a1/20161014/RAW_DATA', 'mx415',
'sample1', 'dataset_20161014_1')
client.appendFile(
'/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test1.txt')
client.appendFile(
'/data/visitor/mx415/id30a1/20161014/RAW_DATA/t1/test2.txt')
client.printStatus()
client.end()