def writer (iter, output, **argh):
entry = iter.first ()
while entry:
ekeys = {}
for k in entry.keys (): ekeys [k] = 1
med = one_to_one ['UI']
if entry.has_key (med):
del ekeys [med]
ui = str (entry [med])
else:
print "warning: entry has no medline reference"
ui = 0
output.write ('%-4.4s- %s\n' % ('UI', ui))
med = one_to_one ['AU']
if entry.has_key (med):
del ekeys [med]
for auth in entry [med]:
first = auth.first or ''
compact = []
for seq in string.split (first, ' '):
if len (seq) > 0: compact.append (seq [0])
first = string.join (compact, '')
text = string.join ((auth.last or '', first, auth.lineage or ''), ' ')
output.write ('%-4.4s- %s\n' % ('AU', text))
med = one_to_one ['DP']
if entry.has_key (med):
del ekeys [med]
output.write ('%-4.4s- %s\n' % ('DP', str (entry [med])))
# write the remaining know fields
for key in one_to_one.keys ():
field = one_to_one [key]
if not ekeys.has_key (field): continue
del ekeys [field]
output.write ('%-4.4s- %s\n' % (key, Utils.format (str (entry [field]),
75, 0, 6)))
# write the unknown fields
remaining = ekeys.keys ()
remaining.sort ()
for field in remaining:
if field [0:8] == 'medline-':
key = string.upper (field [8:])
output.write ('%-4.4s- %s\n' % (key, Utils.format (str (entry [field]),
75, 0, 6)))
entry = iter.next ()
if entry: output.write ('\n')
def __str__(self):
''' Nice standard entry '''
tp = self.type.name
fields = self.type.fields
try:
text = '%s [%s]\n' % (tp, self.key.key)
except AttributeError:
text = '%s [no key]\n' %(tp)
text = text + ('-' * 70) + '\n'
dico = self.keys ()
for f in fields:
name = f.name
lcname = string.lower(name)
if not self.has_key(lcname):
continue
text = text + ' %-14s ' % name
text = text + Utils.format(str(self[lcname]),
75, 17, 17) [17:]
text = text + '\n'
try:
dico.remove(lcname)
except ValueError:
raise ValueError, \
'multiple definitions of field `%s\' in `%s\'' \
% (name, tp)
for f in dico:
text = text + ' %-14s ' % f
text = text + Utils.format(str(self[f]),
75, 17, 17) [17:]
text = text + '\n'
return text
def output_write(key, text):
# A text is either a string or a list:
if type(text) == types.ListType:
output.write ('%2s %s\n' %(key, text[0]))
for t in text[1:]:
output.write (' %s\n' %(t))
elif str(text):
output.write ('%2s %s\n' % (key, Utils.format(
str (text), 70, 0, 3)))
def writer (iter, output, **argh):
entry = iter.first ()
mapping = Config.get ("refer/mapping").data
while entry:
for key in mapping.keys ():
# some fields are not to be used in output, as we
# lost their content
if not mapping [key] [1]: continue
field = mapping [key] [0]
if field == "label" and entry.key:
output.write ('%' + key + ' ')
output.write (Utils.format (str (entry.key.key), 75, 0, 0))
output.write ('\n')
continue
elif entry.has_key (field):
type = Types.get_field (field).type
if type == Fields.AuthorGroup:
# one field per author
for auth in entry [field]:
output.write ('%' + key + ' ')
output.write (Utils.format (str (auth), 75, 0, 0))
output.write ('\n')
continue
# general case
output.write ('%' + key + ' ')
output.write (Utils.format (str (entry [field]), 75, 0, 0))
output.write ('\n')
entry = iter.next ()
if entry: output.write ('\n')
return
def writer(iter, output, **argh):
entry = iter.first()
mapping = Config.get("refer/mapping").data
while entry:
for key in mapping.keys():
# some fields are not to be used in output, as we
# lost their content
if not mapping[key][1]: continue
field = mapping[key][0]
if field == "label" and entry.key:
output.write('%' + key + ' ')
output.write(Utils.format(str(entry.key.key), 75, 0, 0))
output.write('\n')
continue
elif entry.has_key(field):
type = Types.get_field(field).type
if type == Fields.AuthorGroup:
# one field per author
for auth in entry[field]:
output.write('%' + key + ' ')
output.write(Utils.format(str(auth), 75, 0, 0))
output.write('\n')
continue
# general case
output.write('%' + key + ' ')
output.write(Utils.format(str(entry[field]), 75, 0, 0))
output.write('\n')
entry = iter.next()
if entry: output.write('\n')
return
def end (self):
self.data = string.strip (self.data)
text = Utils.format (self.data, 79, self.length, self.length)
self.out.write (self.key + text [self.length:] + '\n\n')
return
def test01 (self):
for i in self.data:
p, r = i[0], i[1:]
self.assertEqual (Utils.compress_page_range(p,False), r)
def writer(iter, output, **argh):
global one_to_one
if one_to_one is None:
one_to_one = Config.get('medline/mapping').data
entry = iter.first()
while entry:
ekeys = {}
for k in entry.keys():
ekeys[k] = 1
med = one_to_one['UI']
if entry.has_key(med):
del ekeys[med]
ui = str(entry[med])
else:
print "warning: entry has no medline reference"
ui = 0
output.write('%-4.4s- %s\n' % ('UI', ui))
med = one_to_one['AU']
if entry.has_key(med):
del ekeys[med]
for auth in entry[med]:
first = auth.first or ''
compact = []
for seq in string.split(first, ' '):
if len(seq) > 0: compact.append(seq[0])
first = string.join(compact, '')
text = string.join(
(auth.last or '', first, auth.lineage or ''), ' ')
output.write('%-4.4s- %s\n' % ('AU', text))
med = one_to_one['DP']
if entry.has_key(med):
del ekeys[med]
output.write('%-4.4s- %s\n' % ('DP', str(entry[med])))
# write the remaining know fields
for key in one_to_one.keys():
field = one_to_one[key]
if not ekeys.has_key(field): continue
del ekeys[field]
output.write('%-4.4s- %s\n' %
(key, Utils.format(str(entry[field]), 75, 0, 6)))
# write the unknown fields
remaining = ekeys.keys()
remaining.sort()
for field in remaining:
if field[0:8] == 'medline-':
key = string.upper(field[8:])
output.write('%-4.4s- %s\n' %
(key, Utils.format(str(entry[field]), 75, 0, 6)))
entry = iter.next()
if entry: output.write('\n')
def entry_write(entry, output):
'''Print a single entry as BiBTeX code.'''
native = isinstance(entry, Entry)
tp = entry.type
# write the type and key
output.write('@%s{%s,\n' % (tp.name, entry.key.key))
# create a hash containing all the keys, to keep track
# of those who have been already written
dico = {}
datefields = Config.get('bibtex/datefield').data
convert = Config.get('bibtex/months').data
# we have to handle the special case of the dates
# create the list of months
monthlist = range(0, 12)
for key in convert.keys():
monthlist[convert[key]-1] = key
dateformat = Config.get('bibtex+/dateformat').data
if native:
# loop over all the fields
for field in entry.keys():
if datefields.has_key(field):
# we are processing a date...
date = entry[field]
dico[datefields[field][0]] = str(date.year)
if date.month:
month = monthlist[date.month - 1]
if date.day:
month = dateformat % {'day': date.day,
'month' : month}
dico[datefields[field][1]] = month
else:
# we are processing a normal entry
dico[field] = _bibtex.get_native(entry.dict[field])
else:
for field in entry.keys():
# convert the field in a bibtex form
if datefields.has_key(field):
# we are processing a date...
date = entry[field]
dico[datefields[field][0]] = str(date.year)
if date.month:
month = monthlist[date.month - 1]
if date.day:
month = dateformat % {'day': date.day,
'month' : month}
dico[datefields[field][1]] = month
else:
# we are processing a normal entry
value = entry[field]
# eventually convert the crossref
if isinstance(value, Reference):
value = string.join(map(lambda item: item.key, value.list), ', ')
fieldtype = _fieldtype(Types.get_field(field))
dico[field] = _nativify(value, fieldtype)
first = True
# write according to the type order
for f in tp.mandatory + tp.optional:
# dico contains all the available fields
field = string.lower(f.name)
if not dico.has_key(field):
continue
if not first: output.write (',\n')
else: first = False
output.write(' %-14s = ' % f.name)
output.write(Utils.format (dico[field],
75, 19, 19)[19:])
del dico[field]
keys = dico.keys()
keys.sort()
for f in keys:
if not first: output.write (',\n')
else: first = False
output.write(' %-14s = ' % f)
output.write(Utils.format(dico[f],
75, 19, 19)[19:])
output.write ('\n}\n\n')
return
def entry_write(entry, output):
'''Print a single entry as BiBTeX code.'''
native = isinstance(entry, Entry)
tp = entry.type
# write the type and key
output.write('@%s{%s,\n' % (tp.name, entry.key.key))
# create a hash containing all the keys, to keep track
# of those who have been already written
dico = {}
datefields = Config.get('bibtex/datefield').data
convert = Config.get('bibtex/months').data
# we have to handle the special case of the dates
# create the list of months
monthlist = range(0, 12)
for key in convert.keys():
monthlist[convert[key] - 1] = key
dateformat = Config.get('bibtex+/dateformat').data
if native:
# loop over all the fields
for field in entry.keys():
if datefields.has_key(field):
# we are processing a date...
date = entry[field]
dico[datefields[field][0]] = str(date.year)
if date.month:
month = monthlist[date.month - 1]
if date.day:
month = dateformat % {'day': date.day, 'month': month}
dico[datefields[field][1]] = month
else:
# we are processing a normal entry
dico[field] = _bibtex.get_native(entry.dict[field])
else:
for field in entry.keys():
# convert the field in a bibtex form
if datefields.has_key(field):
# we are processing a date...
date = entry[field]
dico[datefields[field][0]] = str(date.year)
if date.month:
month = monthlist[date.month - 1]
if date.day:
month = dateformat % {'day': date.day, 'month': month}
dico[datefields[field][1]] = month
else:
# we are processing a normal entry
value = entry[field]
# eventually convert the crossref
if isinstance(value, Reference):
value = string.join(map(lambda item: item.key, value.list),
', ')
fieldtype = _fieldtype(Types.get_field(field))
dico[field] = _nativify(value, fieldtype)
first = True
# write according to the type order
for f in tp.mandatory + tp.optional:
# dico contains all the available fields
field = string.lower(f.name)
if not dico.has_key(field):
continue
if not first: output.write(',\n')
else: first = False
output.write(' %-14s = ' % f.name)
output.write(Utils.format(dico[field], 75, 19, 19)[19:])
del dico[field]
keys = dico.keys()
keys.sort()
for f in keys:
if not first: output.write(',\n')
else: first = False
output.write(' %-14s = ' % f)
output.write(Utils.format(dico[f], 75, 19, 19)[19:])
output.write('\n}\n\n')
return
def get_native(self, entry):
''' Return the object in its native format '''
stream = Utils.StringStream()
entry_write(entry, stream)
return stream.text