def rooFit208():
print ">>> setup component pdfs..."
t = RooRealVar("t", "t", -10, 30)
ml = RooRealVar("ml", "mean landau", 5., -20, 20)
sl = RooRealVar("sl", "sigma landau", 1, 0.1, 10)
landau = RooLandau("lx", "lx", t, ml, sl)
mg = RooRealVar("mg", "mg", 0)
sg = RooRealVar("sg", "sg", 2, 0.1, 10)
gauss = RooGaussian("gauss", "gauss", t, mg, sg)
print ">>> construct convolution pdf..."
# Set #bins to be used for FFT sampling to 10000
t.setBins(10000, "cache")
# Construct landau (x) gauss
convolution = RooFFTConvPdf("lxg", "landau (X) gauss", t, landau, gauss)
print ">>> sample, fit and plot convoluted pdf..."
data = convolution.generate(RooArgSet(t), 10000) # RooDataSet
convolution.fitTo(data)
print "\n>>> plot everything..."
frame1 = t.frame(Title("landau #otimes gauss convolution")) # RooPlot
data.plotOn(frame1, Binning(50), Name("data"))
convolution.plotOn(frame1, Name("lxg"))
gauss.plotOn(frame1, LineStyle(kDashed), LineColor(kRed), Name("gauss"))
landau.plotOn(frame1, LineStyle(kDashed), LineColor(kGreen),
Name("landau"))
print "\n>>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.6, 0.8, 0.8, 0.6)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.5)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("lxg", "convolution", 'L')
legend.AddEntry("landau", "landau", 'L')
legend.AddEntry("gauss", "gauss", 'L')
legend.Draw()
canvas.SaveAs("rooFit208.png")
def rooFit503():
print ">>> open and workspace file, list its contents and get workspace object..."
file = TFile("rooFit502_workspace.root")
file.ls()
workspace = file.Get("workspace") # RooWorkspace
print "\n>>> retrieve pdf, data from workspace..."
x = workspace.var("x") # RooRealVar
model = workspace.pdf("model") # RooAbsPdf
data = workspace.data("modelData")
print ">>> print model tree:..."
model.Print("t")
print "\n>>> fit model to data..."
model.fitTo(data)
frame1 = x.frame(Title("Model and data read from workspace")) # RooPlot
print ">>> plot everything..."
data.plotOn(frame1, Name("data"), Binning(40))
model.plotOn(frame1, Name("model"))
model.plotOn(frame1, Components("bkg"), LineStyle(kDashed), Name("bkg"))
model.plotOn(frame1, Components("bkg,sig2"), LineStyle(kDotted),
Name("bkgsig2"))
print "\n>>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.8, 0.4, 0.6)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.5)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "model", 'L')
legend.AddEntry("bkg", "background only", 'L')
legend.AddEntry("bkgsig2", "background + signal 2", 'L')
legend.Draw()
canvas.SaveAs("rooFit503.png")
def rooFit203():
print ">>> setup model..."
x = RooRealVar("x", "x", -10, 10)
mean = RooRealVar("mean", "mean of gaussian", 0, -10, 10)
gauss = RooGaussian("gauss", "gaussian PDF", x, mean, RooConst(1))
# Construct px = 1 (flat in x)
px = RooPolynomial("px", "px", x)
# Construct model = f*gx + (1-f)px
f = RooRealVar("f", "f", 0., 1.)
model = RooAddPdf("model", "model", RooArgList(gauss, px), RooArgList(f))
data = model.generate(RooArgSet(x), 10000) # RooDataSet
print ">>> fit to full data range..."
result_full = model.fitTo(data, Save(kTRUE)) # RooFitResult
print "\n>>> fit \"signal\" range..."
# Define "signal" range in x as [-3,3]
x.setRange("signal", -3, 3)
result_sig = model.fitTo(data, Save(kTRUE),
Range("signal")) # RooFitResult
print "\n>>> plot and print results..."
# Make plot frame in x and add data and fitted model
frame1 = x.frame(Title("Fitting a sub range")) # RooPlot
data.plotOn(frame1, Name("data"))
model.plotOn(frame1, Range("Full"), LineColor(kBlue),
Name("model")) # Add shape in full ranged dashed
model.plotOn(frame1, LineStyle(kDashed), LineColor(kRed),
Name("model2")) # By default only fitted range is shown
print "\n>>> result of fit on all data:"
result_full.Print()
print "\n>>> result of fit in in signal region (note increased error on signal fraction):"
result_sig.Print()
print ">>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.85, 0.4, 0.65)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "fit (full range)", 'L')
legend.AddEntry("model2", "fit (signal range)", 'L')
legend.Draw()
canvas.SaveAs("rooFit203.png")
def rooFit510():
print ">>> create and fill workspace..."
workspace = RooWorkspace("workspace") # RooWorkspace
fillWorkspace(workspace)
print ">>>\n>>> retrieve model from workspace..."
# Exploit convention encoded in named set "parameters" and "observables"
# to use workspace contents w/o need for introspected
model = workspace.pdf("model") # RooAbsPdf
print ">>> generate and fit data in given observables"
data = model.generate(workspace.set("observables"), 1000) # RooDataSet
model.fitTo(data)
print ">>> plot model and data of first observables..."
frame1 = workspace.set("observables").first().frame() # RooPlot
data.plotOn(frame1, Name("data"), Binning(50))
model.plotOn(frame1, Name("model"))
print ">>> overlay plots with reference parameters as stored in snapshots..."
workspace.loadSnapshot("reference_fit")
model.plotOn(frame1, LineColor(kRed), Name("model_ref"))
workspace.loadSnapshot("reference_fit_bkgonly")
model.plotOn(frame1, LineColor(kRed), LineStyle(kDashed), Name("bkg_ref"))
print "\n>>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.8, 0.4, 0.6)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.5)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "model", 'L')
legend.AddEntry("model_ref", "model fit", 'L')
legend.AddEntry("bkg_ref", "background only fit", 'L')
legend.Draw()
canvas.SaveAs("rooFit510.png")
# Print workspace contents
workspace.Print()
# Workspace will remain in memory after macro finishes
gDirectory.Add(workspace)
def rooFit107():
print ">>> setup model..."
x = RooRealVar("x","x",-3,3)
mean = RooRealVar("mean","mean of gaussian",1,-10,10)
sigma = RooRealVar("sigma","width of gaussian",1,0.1,10)
gauss = RooGaussian("gauss","gauss",x,mean,sigma)
data = gauss.generate(RooArgSet(x),1000) # RooDataSet
gauss.fitTo(data)
print ">>> plot pdf and data..."
frame1 = x.frame(Name("frame1"),Title("Red Curve / SumW2 Histo errors"),Bins(20)) # RooPlot
frame2 = x.frame(Name("frame2"),Title("Dashed Curve / No XError bars"),Bins(20)) # RooPlot
frame3 = x.frame(Name("frame3"),Title("Filled Curve / Blue Histo"),Bins(20)) # RooPlot
frame4 = x.frame(Name("frame4"),Title("Partial Range / Filled Bar chart"),Bins(20)) # RooPlot
print ">>> data plotting styles..."
data.plotOn(frame1,DataError(RooAbsData.SumW2))
data.plotOn(frame2,XErrorSize(0)) # Remove horizontal error bars
data.plotOn(frame3,MarkerColor(kBlue),LineColor(kBlue)) # Blue markers and error bors
data.plotOn(frame4,DrawOption("B"),DataError(RooAbsData.None),
XErrorSize(0),FillColor(kGray)) # Filled bar chart
print ">>> data plotting styles..."
gauss.plotOn(frame1,LineColor(kRed))
gauss.plotOn(frame2,LineStyle(kDashed)) # Change line style to dashed
gauss.plotOn(frame3,DrawOption("F"),FillColor(kOrange),MoveToBack()) # Filled shapes in green color
gauss.plotOn(frame4,Range(-8,3),LineColor(kMagenta))
print ">>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas","canvas",100,100,1000,1200)
canvas.Divide(2,2)
for i, frame in enumerate([frame1,frame2,frame3,frame4],1):
canvas.cd(i)
gPad.SetLeftMargin(0.15); gPad.SetRightMargin(0.05)
frame.GetYaxis().SetTitleOffset(1.6)
frame.GetYaxis().SetLabelOffset(0.010)
frame.GetYaxis().SetTitleSize(0.045)
frame.GetYaxis().SetLabelSize(0.042)
frame.GetXaxis().SetTitleSize(0.045)
frame.GetXaxis().SetLabelSize(0.042)
frame.Draw()
canvas.SaveAs("rooFit107.png")
def rooFit204():
print ">>> setup model signal components: gaussians..."
x = RooRealVar("x","x",0,10)
mean = RooRealVar("mean","mean of gaussian",5)
sigma1 = RooRealVar("sigma1","width of gaussians",0.5)
sigma2 = RooRealVar("sigma2","width of gaussians",1)
sig1 = RooGaussian("sig1","Signal component 1",x,mean,sigma1)
sig2 = RooGaussian("sig2","Signal component 2",x,mean,sigma2)
sig1frac = RooRealVar("sig1frac","fraction of component 1 in signal",0.8,0.,1.)
sig = RooAddPdf("sig","Signal",RooArgList(sig1,sig2),RooArgList(sig1frac))
print ">>> setup model background components: Chebychev polynomial..."
a0 = RooRealVar("a0","a0",0.5,0.,1.)
a1 = RooRealVar("a1","a1",-0.2,0.,1.)
bkg = RooChebychev("bkg","Background",x,RooArgList(a0,a1))
print ">>> construct extended components with specified range..."
# Define signal range in which events counts are to be defined
x.setRange("signalRange",5,6)
# Associated nsig/nbkg as expected number of events with sig/bkg _in_the_range_ "signalRange"
nsig = RooRealVar("nsig","number of signal events in signalRange", 500,0.,10000)
nbkg = RooRealVar("nbkg","number of background events in signalRange",500,0,10000)
esig = RooExtendPdf("esig","extended signal pdf", sig,nsig,"signalRange")
ebkg = RooExtendPdf("ebkg","extended background pdf",bkg,nbkg,"signalRange")
print ">>> sum extended components..."
# Construct sum of two extended p.d.f. (no coefficients required)
model = RooAddPdf("model","(g1+g2)+a",RooArgList(ebkg,esig))
print ">>> sample data, fit model..."
data = model.generate(RooArgSet(x),1000) # RooDataSet
result = model.fitTo(data,Extended(kTRUE),Save()) # RooFitResult
print "\n>>> fit result:"
result.Print()
print "\n>>> plot everything..."
frame1 = x.frame(Title("Fitting a sub range")) # RooPlot
data.plotOn(frame1,Binning(50),Name("data"))
model.plotOn(frame1,LineColor(kBlue),Name("model"))
argset1 = RooArgSet(bkg)
model.plotOn(frame1,Components(argset1),LineStyle(kDashed),LineColor(kBlue),Name("bkg"),Normalization(1.0,RooAbsReal.RelativeExpected))
#model.plotOn(frame1,Components(argset1),LineStyle(kDashed),LineColor(kRed),Name("bkg2"))
print ">>> draw on canvas..."
canvas = TCanvas("canvas","canvas",100,100,800,600)
legend = TLegend(0.2,0.85,0.4,0.7)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14); gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "fit", 'L')
legend.AddEntry("bkg", "background only",'L')
#legend.AddEntry("bkg2", "background only (no extended norm)",'L')
legend.Draw()
canvas.SaveAs("rooFit204.png")
def rooFit202():
print ">>> setup model component: gaussian signals and Chebychev polynomial background..."
x = RooRealVar("x", "x", 0, 10)
mean = RooRealVar("mean", "mean of gaussian", 5)
sigma1 = RooRealVar("sigma1", "width of gaussian", 0.5)
sigma2 = RooRealVar("sigma2", "width of gaussian", 1.0)
sig1 = RooGaussian("sig1", "Signal component 1", x, mean, sigma1)
sig2 = RooGaussian("sig2", "Signal component 2", x, mean, sigma2)
a0 = RooRealVar("a0", "a0", 0.5, 0., 1.)
a1 = RooRealVar("a1", "a1", -0.2, 0., 1.)
bkg = RooChebychev("bkg", "Background", x, RooArgList(a0, a1))
# Sum the signal components into a composite signal p.d.f.
sig1frac = RooRealVar("sig1frac", "fraction of component 1 in signal", 0.8,
0., 1.)
sig = RooAddPdf("sig", "Signal", RooArgList(sig1, sig2),
RooArgList(sig1frac))
print ">>>\n>>> METHOD 1"
print ">>> construct extended composite model..."
# Sum the composite signal and background into an extended pdf nsig*sig+nbkg*bkg
nsig = RooRealVar("nsig", "number of signal events", 500, 0., 10000)
nbkg = RooRealVar("nbkg", "number of background events", 500, 0, 10000)
model = RooAddPdf("model", "(g1+g2)+a", RooArgList(bkg, sig),
RooArgList(nbkg, nsig))
print ">>> sample, fit and plot extended model...\n"
# Generate a data sample of expected number events in x from model
# nsig + nbkg = model.expectedEvents()
# NOTE: since the model predicts a specific number events, one can
# omit the requested number of events to be generated
# Introduce Poisson fluctuation with Extended(kTRUE)
data = model.generate(RooArgSet(x), Extended(kTRUE)) # RooDataSet
# Fit model to data, extended ML term automatically included
# NOTE: Composite extended pdfs can only be successfully fit if the extended likelihood
# term -log(Poisson(Nobs,Nexp)) is included in the minimization because they have
# one extra degree of freedom in their parameterization that is constrained by
# this extended term. If a pdf is capable of calculating an extended term (i.e.
# any extended RooAddPdf), the extended term is AUTOMATICALLY included in the
# likelihood calculation. Override this behaviour with Extended():
# Extended(kTRUE) ADD extended likelihood term
# Extended(kFALSE) DO NOT ADD extended likelihood
#model.fitTo(data,Extended(kTRUE))
model.fitTo(data)
print "\n>>> plot data, model and model components..."
# Plot data and PDF overlaid, use expected number of events for pdf projection
# normalization, rather than observed number of events, data.numEntries()
frame1 = x.frame(Title("extended ML fit example")) # RooPlot
data.plotOn(frame1, Binning(30), Name("data"))
model.plotOn(frame1, Normalization(1.0, RooAbsReal.RelativeExpected),
Name("model"))
# Overlay the background components of model
# NOTE: By default, the pdf is normalized to event count of the last dataset added
# to the plot frame. Use "RelativeExpected" to normalize to the expected
# event count of the pdf instead
argset1 = RooArgSet(bkg)
argset2 = RooArgSet(sig1)
argset3 = RooArgSet(sig2)
argset4 = RooArgSet(bkg, sig2)
model.plotOn(frame1, Components(argset1), LineStyle(kDashed),
LineColor(kBlue),
Normalization(1.0, RooAbsReal.RelativeExpected), Name("bkg"))
#model.plotOn(frame1,Components(argset1),LineStyle(kDashed),LineColor(kBlue), Name("bkg2"))
model.plotOn(frame1, Components(argset2), LineStyle(kDotted),
LineColor(kMagenta),
Normalization(1.0, RooAbsReal.RelativeExpected), Name("sig1"))
model.plotOn(frame1, Components(argset3), LineStyle(kDotted),
LineColor(kPink),
Normalization(1.0, RooAbsReal.RelativeExpected), Name("sig2"))
model.plotOn(frame1, Components(argset4), LineStyle(kDashed),
LineColor(kAzure - 4),
Normalization(1.0, RooAbsReal.RelativeExpected),
Name("bkgsig2"))
print "\n>>> structure of composite pdf:"
model.Print("t") # "tree" mode
print "\n>>> parameters:"
params = model.getVariables() # RooArgSet
params.Print("v")
params.Print()
print "\n>>> params.find(\"...\").getVal():"
print ">>> sigma1 = %.2f" % params.find("sigma1").getVal()
print ">>> sigma2 = %.2f" % params.find("sigma2").getVal()
print ">>> nsig = %6.2f, sig1frac = %5.2f" % (
params.find("nsig").getVal(), params.find("sig1frac").getVal())
print ">>> nbkg = %6.2f" % params.find("nbkg").getVal()
print ">>>\n>>> components:"
comps = model.getComponents() # RooArgSet
sig = comps.find("sig") # RooAbsArg
sigVars = sig.getVariables() # RooArgSet
sigVars.Print()
print ">>>\n>>> METHOD 2"
print ">>> construct extended components first..."
# Associated nsig/nbkg as expected number of events with sig/bkg
nsig = RooRealVar("nsig", "number of signal events", 500, 0., 10000)
nbkg = RooRealVar("nbkg", "number of background events", 500, 0, 10000)
esig = RooExtendPdf("esig", "extended signal pdf", sig, nsig)
ebkg = RooExtendPdf("ebkg", "extended background pdf", bkg, nbkg)
print ">>> sum extended components without coefficients..."
# Construct sum of two extended p.d.f. (no coefficients required)
model2 = RooAddPdf("model2", "(g1+g2)+a", RooArgList(ebkg, esig))
# METHOD 2 is functionally completely equivalent to METHOD 1.
# Its advantage is that the yield parameter is associated to the shape pdf
# directly, while in METHOD 1 the association is made after constructing
# a RooAddPdf. Also, class RooExtendPdf offers extra functionality to
# interpret event counts in a different range.
print ">>> plot model..."
model2.plotOn(frame1, LineStyle(kDashed), LineColor(kRed),
Normalization(1.0, RooAbsReal.RelativeExpected),
Name("model2"))
print ">>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.85, 0.4, 0.65)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "composite model", 'L')
legend.AddEntry("model2", "composite model (method 2)", 'L')
legend.AddEntry("bkg", "background only", 'L')
#legend.AddEntry("bkg2", "background only (no extended norm)", 'L')
legend.AddEntry("sig1", "signal 1", 'L')
legend.AddEntry("sig2", "signal 2", 'L')
legend.AddEntry("bkgsig2", "background + signal 2", 'L')
legend.Draw()
canvas.SaveAs("rooFit202.png")
mean.setConstant(False)
gamma.setConstant(False)
sigma_1.setConstant(False)
sigma_2.setConstant(False)
rPhifit = tot.fitTo(splotData,Range(phimin,phimax),RooFit.NumCPU(args.ncpu),RooFit.Verbose(False))
nfits = nfits + 1
c = TCanvas("canvas","canvas",1200,900)
phiFrame = masskk.frame(Range(phimin,phimax),Normalization((nSig.getValV() + nBkg.getValV())), Title("#phi Mass"))
splotData.plotOn(phiFrame)
ratio = 1.0/float(nfits)
tot.plotOn(phiFrame,Normalization(ratio))
bFrac = (nBkg.getValV())/(nSig.getValV() + nBkg.getValV())
bkg.plotOn(phiFrame,LineColor(kRed),Normalization(bFrac),LineStyle(kDashed))
signal.plotOn(phiFrame,LineColor(kGreen),Normalization(1.0-bFrac))
a0.setConstant(True)
a1.setConstant(True)
a2.setConstant(True)
a3.setConstant(True)
a4.setConstant(True)
nBkg.setConstant(True)
tot.paramOn(phiFrame,RooFit.Layout(0.57,0.99,0.65))
phiFrame.Draw()
sidesigma = np.sqrt((rFrac.getValV())*sigma_1.getValV()**2 + (1.0 - (rFrac.getValV()))*sigma_2.getValV()**2)
#Plotting fits
canvs = []
fitPads = []
pullPads = []
pulls = []
for i in range(n_regions) :
region = regions[i]
canvs.append(TCanvas(region+"_canv", region+" D0 Mass Region Fit"))
frame = deltam.frame()
datahist.plotOn(frame, Cut("regionIndex==regionIndex::"+region))
regionIndexSet = RooArgSet(regionIndex)
total_pdf.plotOn(frame, Slice(regionIndex, region), ProjWData(regionIndexSet, datahist))
pulls.append(frame.pullHist())
total_pdf.plotOn(frame, Slice(regionIndex, region), ProjWData(regionIndexSet, datahist), Components("bg_pdf"), LineColor(kGreen+2), LineStyle(2))
total_pdf.plotOn(frame, Slice(regionIndex, region), ProjWData(regionIndexSet, datahist), Components("signal_pdf_"+region), LineColor(kRed+2), LineStyle(3))
#Creating pad to plot fit to data
fitPads.append(TPad("fitPad_{}".format(i), "fitPad_{}".format(i), 0., 0.3, 1., 1.))
fitPads[i].SetMargin(0.08, 0.05, 0.05, 0.1)
fitPads[i].Draw()
fitPads[i].cd()
frame.Draw()
#Creating pad to plot pull ( (actual - fit) / uncertainty )
canvs[i].cd()
pullPads.append(TPad("pullPad_{}".format(i), "pullPad_{}".format(i), 0., 0., 1., 0.3))
pullPads[i].SetMargin(0.08, 0.05, 0.1, 0.05)
pullPads[i].Draw()
masslist = RooArgList(mass)
dh = RooDataHist("dh", "dh", masslist, hist)
numEvts = dh.sum(False)
print numEvts
# In[10]:
tot.fitTo(dh)
# In[11]:
massFrame = mass.frame()
massFrame.SetTitle("Phi signal")
dh.plotOn(massFrame)
tot.plotOn(massFrame)
gauss.plotOn(massFrame, LineColor(kGreen), LineStyle(kDashed),
Normalization((sFrac.getValV() * numEvts) / (numEvts)))
cheb.plotOn(massFrame, LineColor(kMagenta), LineStyle(kDotted),
Normalization(((1.0 - sFrac.getValV()) * numEvts) / (numEvts)))
tot.paramOn(massFrame, Layout(0.60, 0.99, 0.75))
massFrame.Draw()
# In[12]:
plotmax = hist.GetMaximum() * 1.05
sidesigma = sigma.getValV()
leftlowside = -7. * sidesigma + mean.getValV()
leftupside = -5. * sidesigma + mean.getValV()
rightlowside = +5. * sidesigma + mean.getValV()
rightupside = +7. * sidesigma + mean.getValV()
def rooFit205():
print ">>> setup model signal components: gaussians..."
x = RooRealVar("x", "x", 0, 10)
mean = RooRealVar("mean", "mean of gaussians", 5)
sigma1 = RooRealVar("sigma1", "width of gaussians", 0.5)
sigma2 = RooRealVar("sigma2", "width of gaussians", 1)
sig1 = RooGaussian("sig1", "Signal component 1", x, mean, sigma1)
sig2 = RooGaussian("sig2", "Signal component 2", x, mean, sigma2)
sig1frac = RooRealVar("sig1frac", "fraction of component 1 in signal", 0.8,
0., 1.)
sig = RooAddPdf("sig", "Signal", RooArgList(sig1, sig2),
RooArgList(sig1frac))
print ">>> setup model background components: Chebychev polynomial plus exponential..."
a0 = RooRealVar("a0", "a0", 0.5, 0., 1.)
a1 = RooRealVar("a1", "a1", -0.2, 0., 1.)
bkg1 = RooChebychev("bkg1", "Background 1", x, RooArgList(a0, a1))
alpha = RooRealVar("alpha", "alpha", -1)
bkg2 = RooExponential("bkg2", "Background 2", x, alpha)
bkg1frac = RooRealVar("bkg1frac", "fraction of component 1 in background",
0.2, 0., 1.)
bkg = RooAddPdf("bkg", "Signal", RooArgList(bkg1, bkg2),
RooArgList(bkg1frac))
print ">>> sum signal and background component..."
bkgfrac = RooRealVar("bkgfrac", "fraction of background", 0.5, 0., 1.)
model = RooAddPdf("model", "g1+g2+a", RooArgList(bkg, sig),
RooArgList(bkgfrac))
print ">>> setup basic plot with data and full pdf..."
data = model.generate(RooArgSet(x), 1000) # RooDataSet
frame1 = x.frame(
Title("Component plotting of pdf=(sig1+sig2)+(bkg1+bkg2)")) # RooPlot
data.plotOn(frame1, Name("data"))
model.plotOn(frame1, Name("model"))
print ">>> clone frame for reuse..."
frame2 = frame1.Clone("frame2") # RooPlot
frame2.SetTitle("Get components with regular expressions")
print ">>> make omponent by object reference..."
# Plot multiple background components specified by object reference
# Note that specified components may occur at any level in object tree
# (e.g bkg is component of 'model' and 'sig2' is component 'sig')
argset1 = RooArgSet(bkg)
argset2 = RooArgSet(bkg2)
argset3 = RooArgSet(bkg, sig2)
model.plotOn(frame1, Components(argset1), LineColor(kRed), Name("bkgs1"))
model.plotOn(frame1, Components(argset2), LineStyle(kDashed),
LineColor(kRed), Name("bkg2"))
model.plotOn(frame1, Components(argset3), LineStyle(kDotted),
Name("bkgssig21"))
print "\n>>> make component by name / regular expressions..."
model.plotOn(frame2, Components("bkg"), LineColor(kAzure - 4),
Name("bkgs2")) # by name
model.plotOn(frame2, Components("bkg1,sig2"), LineColor(kAzure - 4),
LineStyle(kDotted), Name("bkg1sig22")) # by name
model.plotOn(frame2, Components("sig*"), LineColor(kAzure - 4),
LineStyle(kDashed), Name("sigs2")) # with regexp (wildcard *)
model.plotOn(frame2, Components("bkg1,sig*"), LineColor(kYellow),
LineStyle(kDashed),
Name("bkg1sigs2")) # with regexp (,) #Invisible()
print "\n>>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 1400, 600)
legend1 = TLegend(0.22, 0.85, 0.4, 0.65)
legend2 = TLegend(0.22, 0.85, 0.4, 0.65)
for legend in [legend1, legend2]:
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
canvas.Divide(2)
canvas.cd(1)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.6)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend1.AddEntry("data", "data", 'LEP')
legend1.AddEntry("model", "model", 'L')
legend1.AddEntry("bkgs1", "bkg", 'L')
legend1.AddEntry("bkg2", "bkg2", 'L')
legend1.AddEntry("bkgssig21", "bkg,sig2", 'L')
legend1.Draw()
canvas.cd(2)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame2.GetYaxis().SetLabelOffset(0.008)
frame2.GetYaxis().SetTitleOffset(1.6)
frame2.GetYaxis().SetTitleSize(0.045)
frame2.GetXaxis().SetTitleSize(0.045)
frame2.Draw()
legend2.AddEntry("data", "data", 'LEP')
legend2.AddEntry("model", "model", 'L')
legend2.AddEntry("bkgs2", "\"bkg\"", 'L')
legend2.AddEntry("bkg1sig22", "\"bkg1,sig2\"", 'L')
legend2.AddEntry("sigs2", "\"sig*\"", 'L')
legend2.AddEntry("bkg1sigs2", "\"bkg1,sig*\"", 'L')
legend2.Draw()
canvas.SaveAs("rooFit205.png")
def rooFit501():
print ">>> setup model for physics sample..."
x = RooRealVar("x", "x", -8, 8)
mean = RooRealVar("mean", "mean", 0, -8, 8)
sigma = RooRealVar("sigma", "sigma", 0.3, 0.1, 10)
gauss = RooGaussian("gx", "gx", x, mean, sigma)
a0 = RooRealVar("a0", "a0", -0.1, -1, 1)
a1 = RooRealVar("a1", "a1", 0.004, -1, 1)
px = RooChebychev("px", "px", x, RooArgList(a0, a1))
f = RooRealVar("f", "f", 0.2, 0., 1.)
model = RooAddPdf("model", "model", RooArgList(gauss, px), RooArgList(f))
print ">>> setup model for control sample..."
# NOTE: sigma is shared with the signal sample model
mean_ctrl = RooRealVar("mean_ctrl", "mean_ctrl", -3, -8, 8)
gauss_ctrl = RooGaussian("gauss_ctrl", "gauss_ctrl", x, mean_ctrl, sigma)
a0_ctrl = RooRealVar("a0_ctrl", "a0_ctrl", -0.1, -1, 1)
a1_ctrl = RooRealVar("a1_ctrl", "a1_ctrl", 0.5, -0.1, 1)
px_ctrl = RooChebychev("px_ctrl", "px_ctrl", x,
RooArgList(a0_ctrl, a1_ctrl))
f_ctrl = RooRealVar("f_ctrl", "f_ctrl", 0.5, 0., 1.)
model_ctrl = RooAddPdf("model_ctrl", "model_ctrl",
RooArgList(gauss_ctrl, px_ctrl), RooArgList(f_ctrl))
print ">>> generate events for both samples..."
data = model.generate(RooArgSet(x), 100) # RooDataSet
data_ctrl = model_ctrl.generate(RooArgSet(x), 2000) # RooDataSet
print ">>> create index category and join samples..."
# Define category to distinguish physics and control samples events
sample = RooCategory("sample", "sample")
sample.defineType("physics")
sample.defineType("control")
print ">>> construct combined dataset in (x,sample)..."
combData = RooDataSet("combData", "combined data", RooArgSet(x),
Index(sample), Import("physics", data),
Import("control", data_ctrl))
print ">>> construct a simultaneous pdf in (x,sample)..."
# Construct a simultaneous pdf using category sample as index
simPdf = RooSimultaneous("simPdf", "simultaneous pdf", sample)
# Associate model with the physics state and model_ctrl with the control state
simPdf.addPdf(model, "physics")
simPdf.addPdf(model_ctrl, "control")
print ">>> perform a simultaneous fit..."
# Perform simultaneous fit of model to data and model_ctrl to data_ctrl
simPdf.fitTo(combData)
print "\n>>> plot model slices on data slices..."
frame1 = x.frame(Bins(30), Title("Physics sample")) # RooPlot
combData.plotOn(frame1, Cut("sample==sample::physics"))
# Plot "physics" slice of simultaneous pdf.
# NBL You _must_ project the sample index category with data using ProjWData
# as a RooSimultaneous makes no prediction on the shape in the index category
# and can thus not be integrated
simPdf.plotOn(frame1, Slice(sample, "physics"),
ProjWData(RooArgSet(sample), combData))
simPdf.plotOn(frame1, Slice(sample, "physics"), Components("px"),
ProjWData(RooArgSet(sample), combData), LineStyle(kDashed))
print "\n>>> plot control sample slices..."
frame2 = x.frame(Bins(30), Title("Control sample")) # RooPlot
combData.plotOn(frame2, Cut("sample==sample::control"))
simPdf.plotOn(frame2, Slice(sample, "control"),
ProjWData(RooArgSet(sample), combData))
simPdf.plotOn(frame2, Slice(sample, "control"), Components("px_ctrl"),
ProjWData(RooArgSet(sample), combData), LineStyle(kDashed))
print "\n>>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 1400, 600)
canvas.Divide(2)
canvas.cd(1)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.6)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
canvas.cd(2)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame2.GetYaxis().SetLabelOffset(0.008)
frame2.GetYaxis().SetTitleOffset(1.6)
frame2.GetYaxis().SetTitleSize(0.045)
frame2.GetXaxis().SetTitleSize(0.045)
frame2.Draw()
canvas.SaveAs("rooFit501.png")
def rooFit201():
print ">>> setup model component: gaussian signals and Chebychev polynomial background..."
x = RooRealVar("x","x",0,11)
mean = RooRealVar("mean","mean of gaussians",5)
sigma1 = RooRealVar("sigma1","width of gaussians",0.5)
sigma2 = RooRealVar("sigma2","width of gaussians",1)
sig1 = RooGaussian("sig1","Signal component 1",x,mean,sigma1)
sig2 = RooGaussian("sig2","Signal component 2",x,mean,sigma2)
a0 = RooRealVar("a0","a0",0.5,0.,1.)
a1 = RooRealVar("a1","a1",-0.2,0.,1.)
bkg = RooChebychev("bkg","Background",x,RooArgList(a0,a1))
print ">>>\n>>> METHOD 1 - Two RooAddPdfs"
print ">>> add signal components..."
# Sum the signal components into a composite signal p.d.f.
sig1frac = RooRealVar("sig1frac","fraction of component 1 in signal",0.8,0.,1.)
sig = RooAddPdf("sig","Signal",RooArgList(sig1,sig2),RooArgList(sig1frac))
print ">>> add signal and background..."
# Sum the composite signal and background
bkgfrac = RooRealVar("bkgfrac","fraction of background",0.5,0.,1.)
model = RooAddPdf("model","g1+g2+a",RooArgList(bkg,sig),RooArgList(bkgfrac))
print ">>> sample, fit and plot model..."
data = model.generate(RooArgSet(x),1000) # RooDataSet
model.fitTo(data)
frame1 = x.frame(Title("Example of composite pdf=(sig1+sig2)+bkg")) # RooPlot
data.plotOn(frame1,Binning(50),Name("data"))
model.plotOn(frame1,Name("model"))
# Overlay the background component of model with a dashed line
argset1 = RooArgSet(bkg)
model.plotOn(frame1,Components(argset1),LineWidth(2),Name("bkg")) #,LineStyle(kDashed)
# Overlay the background+sig2 components of model with a dotted line
argset2 = RooArgSet(bkg,sig2)
model.plotOn(frame1,Components(argset2),LineWidth(2),LineStyle(kDashed),LineColor(kAzure-4),Name("bkgsig2")) #,LineStyle(kDotted)
print "\n>>> structure of composite pdf:"
model.Print("t") # "tree" mode
print "\n>>> parameters:"
params = model.getVariables() # RooArgSet
params.Print("v")
params.Print()
print "\n>>> params.find(\"...\").getVal():"
print ">>> sigma1 = %.2f" % params.find("sigma1").getVal()
print ">>> sigma2 = %.2f" % params.find("sigma2").getVal()
print ">>> bkgfrac = %5.2f" % params.find("bkgfrac").getVal()
print ">>> sig1frac = %5.2f" % params.find("sig1frac").getVal()
print ">>>\n>>> components:"
comps = model.getComponents() # RooArgSet
sig = comps.find("sig") # RooAbsArg
sigVars = sig.getVariables() # RooArgSet
sigVars.Print()
print ">>>\n>>> METHOD 2 - One RooAddPdf with recursive fractions"
# Construct sum of models on one go using recursive fraction interpretations
# model2 = bkg + (sig1 + sig2)
model2 = RooAddPdf("model","g1+g2+a",RooArgList(bkg,sig1,sig2),RooArgList(bkgfrac,sig1frac),kTRUE)
# NB: Each coefficient is interpreted as the fraction of the
# left-hand component of the i-th recursive sum, i.e.
# sum4 = A + ( B + ( C + D ) )
# with fraction fA, fB and fC expands to
# sum4 = fA*A + (1-fA)*(fB*B + (1-fB)*(fC*C + (1-fC)*D))
print ">>> plot recursive addition model..."
argset3 = RooArgSet(bkg,sig2)
model2.plotOn(frame1,LineColor(kRed),LineStyle(kDashDotted),LineWidth(3),Name("model2"))
model2.plotOn(frame1,Components(argset3),LineColor(kMagenta),LineStyle(kDashDotted),LineWidth(3),Name("bkgsig22"))
model2.Print("t")
print ">>> draw pdfs and fits on canvas..."
canvas = TCanvas("canvas","canvas",100,100,800,600)
legend = TLegend(0.57,0.87,0.95,0.65)
legend.SetTextSize(0.030)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14); gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "composite model", 'L')
legend.AddEntry("model2", "composite model (method 2)", 'L')
legend.AddEntry("bkg", "background only", 'L')
legend.AddEntry("bkgsig2", "background + signal 2", 'L')
legend.AddEntry("bkgsig22","background + signal 2 (method 2)",'L')
legend.Draw()
canvas.SaveAs("rooFit201.png")
def rooFit206():
print ">>> setup model signal components: gaussians..."
x = RooRealVar("x", "x", 0, 10)
mean = RooRealVar("mean", "mean of gaussians", 5)
sigma1 = RooRealVar("sigma1", "width of gaussians", 0.5)
sigma2 = RooRealVar("sigma2", "width of gaussians", 1)
sig1 = RooGaussian("sig1", "Signal component 1", x, mean, sigma1)
sig2 = RooGaussian("sig2", "Signal component 2", x, mean, sigma2)
sig1frac = RooRealVar("sig1frac", "fraction of component 1 in signal", 0.8,
0., 1.)
sig = RooAddPdf("sig", "Signal", RooArgList(sig1, sig2),
RooArgList(sig1frac))
print ">>> setup model background components: Chebychev polynomial plus exponential..."
a0 = RooRealVar("a0", "a0", 0.5, 0., 1.)
a1 = RooRealVar("a1", "a1", -0.2, 0., 1.)
bkg1 = RooChebychev("bkg1", "Background 1", x, RooArgList(a0, a1))
alpha = RooRealVar("alpha", "alpha", -1)
bkg2 = RooExponential("bkg2", "Background 2", x, alpha)
bkg1frac = RooRealVar("bkg1frac", "fraction of component 1 in background",
0.2, 0., 1.)
bkg = RooAddPdf("bkg", "Signal", RooArgList(bkg1, bkg2),
RooArgList(bkg1frac))
print ">>> sum signal and background component..."
bkgfrac = RooRealVar("bkgfrac", "fraction of background", 0.5, 0., 1.)
model = RooAddPdf("model", "g1+g2+a", RooArgList(bkg, sig),
RooArgList(bkgfrac))
print ">>> composite tree in ASCII:"
model.Print("t")
print "\n>>> write to txt file"
model.printCompactTree("", "rooFit206_asciitree.txt")
print ">>> draw composite tree graphically..."
# Print GraphViz DOT file with representation of tree
model.graphVizTree("rooFit206_model.dot")
# Make graphic output file with one of the GraphViz tools
# (freely available from www.graphviz.org)
#
# 'Top-to-bottom graph'
# unix> dot -Tgif -o rooFit206_model_dot.gif rooFit206_model.dot
#
# 'Spring-model graph'
# unix> fdp -Tgif -o rooFit206_model_fdp.gif rooFit206_model.dot
print ">>> plot everything..."
data = model.generate(RooArgSet(x), 1000) # RooDataSet
frame1 = x.frame(
Title("Component plotting of pdf=(sig1+sig2)+(bkg1+bkg2)")) # RooPlot
data.plotOn(frame1, Name("data"), Binning(40))
model.plotOn(frame1, Name("model"))
argset1 = RooArgSet(bkg)
argset2 = RooArgSet(bkg2)
argset3 = RooArgSet(bkg, sig2)
model.plotOn(frame1, Components(argset1), LineColor(kRed), Name("bkg"))
model.plotOn(frame1, Components(argset2), LineStyle(kDashed),
LineColor(kRed), Name("bkg2"))
model.plotOn(frame1, Components(argset3), LineStyle(kDotted),
Name("bkgsig2"))
print "\n>>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.22, 0.85, 0.4, 0.65)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.6)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "model", 'L')
legend.AddEntry("bkg", "bkg", 'L')
legend.AddEntry("bkg2", "bkg2", 'L')
legend.AddEntry("bkgsig2", "bkg,sig2", 'L')
legend.Draw()
canvas.SaveAs("rooFit206.png")