def MakeROOTPrimitive(self):
result = TList()
result.SetName(self.triggername)
self.__eventcount.SetName("events")
self.__projectedSpectrum.SetName("spectrum")
result.Add(self.__eventcount)
result.Add(self.__projectedSpectrum)
return result
def MakeROOTPrimitive(self, name):
result = TList()
result.SetName(name)
if self.__MCtruth:
result.Add(self.__MCtruth)
for hist in self.__triggers.itervalues():
result.Add(hist)
return result
def ROOTify(self):
"""
Create simple primitive ROOT object structure
"""
outputlist = TList()
outputlist.SetName("JetSpectraPt%03d" % (int(self.__jetpt)))
for spec in self.__spectra:
outputlist.Add(spec)
return outputlist
def dict2rootmap(dict):
'''assumes keys are strings, and vals are lists of strings'''
map = TMap()
for (key, entries) in dict.iteritems():
rootkey = TObjString(key)
rootval = TList()
for entry in entries:
rootval.Add(TObjString(entry))
map.Add(rootkey, rootval)
return map
def DrawUL(gUL):
alist = TList()
for i in range(gUL.GetN()):
a = TArrow(gUL.GetX()[i],
gUL.GetY()[i],
gUL.GetX()[i],
gUL.GetY()[i] / 3., 0.01, ">")
a.SetLineColor(gUL.GetLineColor())
a.Draw()
alist.Add(a)
return alist
def hadd(input_file_names, result_file_name):
"""
The top function for merging files.
:param str result_file_name: path to the output file
:param list[str] source_list: list of paths to the input files
"""
target = TFile.Open(result_file_name, "RECREATE")
file_list = TList()
for file_name in input_file_names:
file_list.Add(TFile.Open(file_name))
merge_root_file(target, file_list)
def GetRootPrimitive(self, name):
"""
Convert object to a root primitive (so that it can be wirtten to a rootfile)
"""
result = TList()
result.SetName(name)
events = self._events.GetROOTHisto()
events.SetName("events")
result.Add(events)
spectrum = self.__spectrum.GetRootPrimitive()
spectrum.SetName("spectrum")
result.Add(spectrum)
return result
def WriteToFile(self, outputname):
outputlists = []
for categ in self.__categories.keys():
mylist = TList()
mylist.SetName(categ)
for entry in self.__categories[categ].itervalues():
mylist.Add(entry)
outputlists.append(mylist)
outputfile = TFile(outputname, "RECREATE")
outputfile.cd()
for myobject in outputlists:
myobject.Write(myobject.GetName(), TObject.kSingleKey)
outputfile.Close()
def CreateData(fileList, filename):
pathList = fileList #['test1.root', 'test2.root']
signalTreeList = TList()
backgroundTreeList = TList()
outputFile = TFile(filename, 'recreate')
pyfilelist = []
pySignalTreelist = []
pyBackgroundTreelist = []
for path in pathList:
print("Path", path)
inputFile = TFile(path, 'read')
pyfilelist.append(inputFile) # Make this TFile survive the loop!
inputSignalTree = inputFile.Get('Signal')
inputBackgroundTree = inputFile.Get('Background')
pySignalTreelist.append(
inputSignalTree) # Make this TTree survive the loop!
pyBackgroundTreelist.append(
inputBackgroundTree) # Make this TTree survive the loop!
outputSignalTree = inputSignalTree.CloneTree(
) #instead of extensive processing
outputBackgroundTree = inputBackgroundTree.CloneTree(
) #instead of extensive processing
signalTreeList.Add(inputSignalTree)
backgroundTreeList.Add(inputBackgroundTree)
outputFile.cd()
outputSignalTree = TTree.MergeTrees(signalTreeList)
outputBackgroundTree = TTree.MergeTrees(backgroundTreeList)
outputFile.Write()
outputFile.Close()
def ProcessBin(self, mybin):
results = BinContent()
bindata = self._inputcol.GetData(mybin)
for trigger in [
"MinBias", "EMCJHigh", "EMCJLow", "EMCGHigh", "EMCGLow"
]:
print "Doing trigger %s" % (trigger)
jetcont = bindata.GetData(trigger).GetJetContainer()
outputcont = TList()
outputcont.SetName(trigger)
for jetpt in jetcont.GetListOfJetPts():
print "Inspecting jet pt %f" % (jetpt)
jetdat = JetData(jetpt, trigger)
projectedRec = jetcont.MakeProjectionRecKine(
jetpt, 0, "projectedPtRec")
projectedMC = jetcont.MakeProjectionMCKine(
jetpt, 0, "projectedPtMC")
jetdat.AddSpectrum(projectedRec, False)
jetdat.AddSpectrum(projectedMC, True)
outputcont.Add(jetdat.ROOTify())
results.AddTrigger(trigger, outputcont)
return results
def MergeHists(listOfHists):
'''
Method to merge histos
Parameters
----------
- listOfHists: python list of histos
Returns
----------
- hMerged: merged histo
'''
listMerge = TList()
for iHist, hist in enumerate(listOfHists):
if iHist == 0:
hMerged = hist.Clone()
else:
listMerge.Add(hist)
hMerged.Merge(listMerge)
return hMerged
def Add(self, other):
if self.__outputtype == "TDirectoryFile":
othercontent = other.content()
logging.info("self scaled %s, has content: %s" %
(self.name(), "Yes" if self.hascontent() else "No"))
logging.info("other scaled %s, has content: %s" %
(other.name(), "Yes" if other.hascontent() else "No"))
for c in self.__content.GetListOfKeys():
for o in othercontent.GetListOfKeys():
if c.GetName() == o.GetName():
others = TList()
others.append(o.ReadObj())
c.ReadObj().Merge(others)
else:
others = TList()
others.append(other.content())
self.__content.Merge(others)
def MakeOutputList(self):
result = TList()
result.SetName("Results%d" % (self.__limit))
rawspectrum = deepcopy(self.__datamodel.GetRawSpectrum())
rawspectrum.SetName("rawspectrum")
fitcurve = deepcopy(self.__datamodel.GetFitCurve())
fitcurve.SetName("parameterisation")
ptreach = self.__points.MakeLimitCurve(None, direction="central")
ptreach.SetName("ptreach")
result.Add(rawspectrum)
result.Add(fitcurve)
result.Add(ptreach)
return result
import cuts as ct
import ROOT as rt
from ROOT import TFile, TTree, TCanvas, TH1F, TList, TH2F, TH3F, TMath, TF1, TStyle, gStyle, TRefArray, TClonesArray, TObjArray, gPad, TPaveText, TLegend, TString, TObject, gROOT, TFormula, TEllipse, TDirectory, TLorentzVector
from ROOT import TMath as mt
from datetime import date
# this code creates the histograms from the analysis results and also applies some additional cuts
# however I am still new to the pyroot so I might be defining histogram more than I needed
# my goal was to create just one set of histogram and clear it after every time I store them in root file for different level of cuts
# Different directory are created to store all the histogram at different level of cuts
#Opening the file>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
filename = "PolarizationSample"
infilename = filename + ".root"
file = TFile.Open(infilename)
#file = TFile.Open("AnalysisResults.root")
list = TList()
list = file.Get("Polar")
tree = list.FindObject("result")
daughter = TLorentzVector()
#daughter =
#tree2 = file.Get("tree2")
#tree2.AddFriend(tree)
#>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
text = TPaveText(.05, .1, .95, .8)
#>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
#this is to use to run in batch mode to avoid printing all the plots
gROOT.SetBatch(rt.kTRUE)
#this create the master canvas color and the entries to print
#gStyle.SetCanvasColor(22)
def main(options, args):
gROOT.Reset()
#load our super special Polarization PDF
gROOT.ProcessLine('.L RooPolarizationPdf.cxx+')
gROOT.ProcessLine('.L RooPolarizationConstraint.cxx+')
#setup integration
intConf = ROOT.RooAbsReal.defaultIntegratorConfig()
#intConf.Print('v')
#intConf.method1D().setLabel('RooAdaptiveGaussKronrodIntegrator1D')
output = TFile.Open('PolVsPt' + options.fitFrame + '.root', 'recreate')
output.cd()
lth_pt_p = TGraphAsymmErrors()
lphi_pt_p = TGraphAsymmErrors()
lthphi_pt_p = TGraphAsymmErrors()
lthtilde_pt_p = TGraphAsymmErrors()
f_pt_p = TGraphAsymmErrors()
lth_pt_p_list = TList()
lphi_pt_p_list = TList()
lthphi_pt_p_list = TList()
lth_pt_p.SetName('lth_pt_p')
lphi_pt_p.SetName('lphi_pt_p')
lthphi_pt_p.SetName('lthphi_pt_p')
lthtilde_pt_p.SetName('lthtilde_pt_p')
f_pt_p.SetName('f_pt_p')
lth_pt_np = TGraphAsymmErrors()
lphi_pt_np = TGraphAsymmErrors()
lthphi_pt_np = TGraphAsymmErrors()
lthtilde_pt_np = TGraphAsymmErrors()
f_pt_np = TGraphAsymmErrors()
lth_pt_np_list = TList()
lphi_pt_np_list = TList()
lthphi_pt_np_list = TList()
lth_pt_np.SetName('lth_pt_np')
lphi_pt_np.SetName('lphi_pt_np')
lthphi_pt_np.SetName('lthphi_pt_np')
lthtilde_pt_np.SetName('lthtilde_pt_np')
f_pt_np.SetName('f_pt_np')
total_nonzero_points = 0
for f in args:
infile = TFile.Open(f)
#ws = output.Get(f[:f.find('.root')].split('-')[0])
frame = f[:f.find('.root')].split('-')[1]
rapBin = f[:f.find('.root')].split('-')[2].split('_')[0]
ptBin = f[:f.find('.root')].split('-')[2].split('_')[1]
lth_p = infile.Get('lth_p_rap' + rapBin)
for point in range(lth_p.GetN()):
x = ROOT.Double(0)
y = ROOT.Double(0)
exl = float(0)
exh = float(0)
eyl = float(0)
eyh = float(0)
lth_p.GetPoint(point, x, y)
if x != 0.0 and y != 0.0:
infile.Get('lth_p_rap' + rapBin).GetPoint(point, x, y)
lth_pt_p.SetPoint(total_nonzero_points, x, y)
infile.Get('lphi_p_rap' + rapBin).GetPoint(point, x, y)
lphi_pt_p.SetPoint(total_nonzero_points, x, y)
infile.Get('lthphi_p_rap' + rapBin).GetPoint(point, x, y)
lthphi_pt_p.SetPoint(total_nonzero_points, x, y)
infile.Get('lthtilde_p_rap' + rapBin).GetPoint(point, x, y)
lthtilde_pt_p.SetPoint(total_nonzero_points, x, y)
infile.Get('f_p_rap' + rapBin).GetPoint(point, x, y)
f_pt_p.SetPoint(total_nonzero_points, x, y)
exh = infile.Get('lth_p_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('lth_p_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lth_p_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('lth_p_rap' + rapBin).GetErrorYlow(point)
lth_pt_p.SetPointError(total_nonzero_points, exl, exh, eyl,
eyh)
exh = infile.Get('lphi_p_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('lphi_p_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lphi_p_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('lphi_p_rap' + rapBin).GetErrorYlow(point)
lphi_pt_p.SetPointError(total_nonzero_points, exl, exh, eyl,
eyh)
exh = infile.Get('lthphi_p_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('lthphi_p_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lthphi_p_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('lthphi_p_rap' + rapBin).GetErrorYlow(point)
lthphi_pt_p.SetPointError(total_nonzero_points, exl, exh, eyl,
eyh)
exh = infile.Get('lthtilde_p_rap' +
rapBin).GetErrorXhigh(point)
exl = infile.Get('lthtilde_p_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lthtilde_p_rap' +
rapBin).GetErrorYhigh(point)
eyl = infile.Get('lthtilde_p_rap' + rapBin).GetErrorYlow(point)
lthtilde_pt_p.SetPointError(total_nonzero_points, exl, exh,
eyl, eyh)
exh = infile.Get('f_p_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('f_p_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('f_p_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('f_p_rap' + rapBin).GetErrorYlow(point)
f_pt_p.SetPointError(total_nonzero_points, exl, exh, eyl, eyh)
infile.Get('lth_np_rap' + rapBin).GetPoint(point, x, y)
lth_pt_np.SetPoint(total_nonzero_points, x, y)
infile.Get('lphi_np_rap' + rapBin).GetPoint(point, x, y)
lphi_pt_np.SetPoint(total_nonzero_points, x, y)
infile.Get('lthphi_np_rap' + rapBin).GetPoint(point, x, y)
lthphi_pt_np.SetPoint(total_nonzero_points, x, y)
infile.Get('lthtilde_np_rap' + rapBin).GetPoint(point, x, y)
lthtilde_pt_np.SetPoint(total_nonzero_points, x, y)
infile.Get('f_np_rap' + rapBin).GetPoint(point, x, y)
f_pt_np.SetPoint(total_nonzero_points, x, y)
exh = infile.Get('lth_np_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('lth_np_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lth_np_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('lth_np_rap' + rapBin).GetErrorYlow(point)
lth_pt_np.SetPointError(total_nonzero_points, exl, exh, eyl,
eyh)
exh = infile.Get('lphi_np_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('lphi_np_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lphi_np_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('lphi_np_rap' + rapBin).GetErrorYlow(point)
lphi_pt_np.SetPointError(total_nonzero_points, exl, exh, eyl,
eyh)
exh = infile.Get('lthphi_np_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('lthphi_np_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('lthphi_np_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('lthphi_np_rap' + rapBin).GetErrorYlow(point)
lthphi_pt_np.SetPointError(total_nonzero_points, exl, exh, eyl,
eyh)
exh = infile.Get('lthtilde_np_rap' +
rapBin).GetErrorXhigh(point)
exl = infile.Get('lthtilde_np_rap' +
rapBin).GetErrorXlow(point)
eyh = infile.Get('lthtilde_np_rap' +
rapBin).GetErrorYhigh(point)
eyl = infile.Get('lthtilde_np_rap' +
rapBin).GetErrorYlow(point)
lthtilde_pt_np.SetPointError(total_nonzero_points, exl, exh,
eyl, eyh)
exh = infile.Get('f_np_rap' + rapBin).GetErrorXhigh(point)
exl = infile.Get('f_np_rap' + rapBin).GetErrorXlow(point)
eyh = infile.Get('f_np_rap' + rapBin).GetErrorYhigh(point)
eyl = infile.Get('f_np_rap' + rapBin).GetErrorYlow(point)
f_pt_np.SetPointError(total_nonzero_points, exl, exh, eyl, eyh)
total_nonzero_points += 1
output.cd()
lth_pt_p.Write()
lphi_pt_p.Write()
lthphi_pt_p.Write()
lthtilde_pt_p.Write()
f_pt_p.Write()
lth_pt_np.Write()
lphi_pt_np.Write()
lthphi_pt_np.Write()
lthtilde_pt_np.Write()
f_pt_np.Write()
output.Close()
format(home),
"{0}/scratch0/ntuple/background_analysis/PFAnalysis_QCDEM3080_4.root".
format(home),
"{0}/scratch0/ntuple/background_analysis/PFAnalysis_QCDEM3080_5.root".
format(home),
"{0}/scratch0/ntuple/background_analysis/PFAnalysis_QCDEM3080_6.root".
format(home),
"{0}/scratch0/ntuple/background_analysis/PFAnalysis_QCDEM3080_7.root".
format(home),
"{0}/scratch0/ntuple/background_analysis/PFAnalysis_QCDEM3080_8.root".
format(home),
"{0}/scratch0/ntuple/background_analysis/PFAnalysis_QCDEM3080_9.root".
format(home),
]
tree_list = TList()
tree_name = "Summary/tree"
output_file_name = "~/scratch0/PFAnalysis_QCDEM3080_0.root"
files = [
TFile(file_name) for file_name in file_list if os.path.exists(file_name)
]
print("{0} files found.".format(len(files)))
trees = [file.Get(tree_name) for file in files]
for tree in trees:
if tree:
tree_list.Add(tree)
merged_tree = TTree.MergeTrees(tree_list)
output_file = TFile(output_file_name, "recreate")
merged_tree.Write()
#!/usr/bin/python
import code
import ROOT as rt
from ROOT import TFile, TTree , TCanvas, TH1F, TList , TH2F ,TMath ,TF1, TStyle ,gStyle , TRefArray, TClonesArray, TObjArray, gPad , TLegend ,TString
file = TFile.Open("Incohernt_Phi_PID.root")
#list = file.Get("")
PhiMass = TCanvas("PhiMass","Phi_Mass",600,300,700,527)
Sigma_Radius = TCanvas("Sigma_Radius","Sigma_Radius",600,300)
SigmavsSigma = TCanvas("SigmavsSigma","SigmaVsSigama",600,300)
dEdX = TCanvas("dEdX","dEdX",600,300)
test = TCanvas("test","dEdX",600,300)
list = TList()
list = file.Get("UPCPhiTaskTest/UPCPhiWithTrigger")
tree = list.FindObject("scatterplot")
#MassPlot for Incoherent Candidates
HighPt_Mass = TH1F("HighPt_Mass","Mass Dist of Inco #Phi with TOF",100, 0 ,10)
HighPt_Mass.SetFillStyle(4050)
HighPt_Mass.SetYTitle("Number of Events")
HighPt_Mass.SetXTitle("Phi Mass(MeV/C^2)")
HighPt_Mass.SetTitleOffset(1.5, "Y")
HighPt_Mass.SetTitleOffset(1.3, "X")
HighPt_Mass.SetLineColor(rt.kGreen)
HighPt_Mass.SetMarkerStyle(rt.kCircle)
HighPt_Mass.SetLineWidth(2)
HighPt_Mass.SetOption("E1")
Pt_mass = HighPt_Mass.Clone()
Pt_mass.SetLineColor(rt.kRed)
Pt_mass.SetLineWidth(4)
#Mass Plot for Coherent Candidates
LowPt_Mass = TH1F("LowPt_Mass","Mass Dist of Incoherent #Phi without TOF info",100, 0 ,2)
def recursiveMerge(target,
infile,
path='',
cache={'TOTALLUMI': 0},
cutflow=True):
l = infile.GetDirectory(path)
keys = l.GetListOfKeys()
cycles = {}
#print("keys in input file: \n\n{0}\n\n".format(keys.ls()))
for entry in range(keys.GetEntries()):
name = keys.At(entry).GetName() + ";" + str(keys.At(entry).GetCycle())
if path:
cachename = path + "/" + name
else:
cachename = name
obj = l.Get(name)
if type(obj) == TDirectoryFile:
#print("TDirectory obj name: {0}".format(obj.GetName()))
targetpath = keys.At(entry).GetName()
if not target.Get(targetpath):
target.mkdir(targetpath)
recursiveMerge(target, infile, path + "/" + obj.GetName(), cache)
elif type(obj) == TTree:
#print("TTree obj name: {0} - cachename: {1} ".format(obj.GetName(), cachename))
cyclename, cyclenumber = cachename.split(';')
if cyclename in cycles: continue
#print("cyclename: {0} - cyclenumber: {1}".format(cyclename, cyclenumber))
cycles[cyclename] = cyclenumber
if not cyclename in cache:
#print("adding cyclename {0} to cache (via TTree::CloneTree())".format(cyclename))
target.cd(path)
cache[cyclename] = obj.CloneTree()
else:
objcached = cache[cyclename]
col = TObjArray()
col.Add(obj)
#print("merging TTree obj to cached object")
objcached.Merge(col)
elif issubclass(obj.__class__, TH1):
#print("TH1 obj name: {0}".format(obj.GetName()))
if not cutflow and keys.At(entry).GetName() == "CutFlow":
continue
if not cachename in cache:
target.cd(path)
cache[cachename] = obj.Clone()
else:
objcached = cache[cachename]
col = TObjArray()
col.Add(obj)
objcached.Merge(col)
elif type(obj) == TObjString:
#print("TObjString obj name: {0}".format(obj.GetName()))
if obj:
target.cd(path)
objnew = TObjString(obj.GetString().Data())
objnew.Write(keys.At(entry).GetName())
cache['TOTALLUMI'] += 1
elif issubclass(obj.__class__, TList):
#print("TList obj name: {0}".format(obj.GetName()))
if obj:
target.cd(path)
objnew = TList(obj)
objnew.Write(keys.At(entry).GetName()) # not working...
else:
print "UNKNOWN OBJECT", name, "OF TYPE", type(obj)
def GetROOTPrimitive(self):
output = TList()
output.SetName(self.__name)
for rootobject in self.__rootobjects:
output.Add(rootobject.GetROOTPrimitive())
return output
def run_analysis(options,args):
tm = tree_manager()
pu_weight_sum = 0.0
selected_events = []
metaInfoTrees = []
nEvents_total = int(0)
pwd = ROOT.gDirectory.GetPath()
for kFile,input_file in enumerate(args):
print
print 'processing input file %i/%i: %s'%(kFile+1,
len(args),
input_file)
in_file = TFile.Open(input_file,'read')
ROOT.gDirectory.cd(pwd)
leptonType = options.leptonType
tree = None
nEvents_sample = 0
specific = None
treeName = 'Ntuple'
if not options.allBranches:
if leptonType == 'muon':
#specific = muonBranches+commonBranches
mmg = in_file.Get('mmg')
tree = mmg.Get('final').Get(treeName)
metaInfoTrees.append(mmg.Get('metaInfo').CloneTree())
nEvents_sample = mmg.Get('eventCount').GetBinContent(1)
nEvents_total += mmg.Get('skimCounter').GetBinContent(1)
mmg = None
elif leptonType == 'electron':
#specific = electronBranches+commonBranches
eeg = in_file.Get('eeg')
tree = eeg.Get('final').Get(treeName)
metaInfoTrees.append(eeg.Get('metaInfo').CloneTree())
nEvents_sample = eeg.Get('eventCount').GetBinContent(1)
nEvents_total += eeg.Get('skimCounter').GetBinContent(1)
eeg = None
else:
raise Exception('invalid lepton type: %s'%options.leptonType)
total_events = tree.GetEntriesFast()
tick_size = total_events/100.0
if tick_size < 1: tick_size = 1.0
#tm.importTree(treeName,tree,specific)
#tm.cloneTree(treeName,'%s_zs'%treeName,specific)
#tm.cloneTree(treeName,'%s_zgs'%treeName,specific)
#tm.cloneTree(treeName,'%s_zgs_nosihih'%treeName,specific)
#setup process dependent stuff
cuts = setupCuts(options)
#lepton_mass = lepton_masses[options.leptonType]
#z_info = z_infos[options.leptonType]
#lepton_info = lepton_infos[options.leptonType]
#setup pu-reweighing
#pu_weight = pu_weight_nominal
#if options.isSummer11:
# pu_weigt = pu_weight_summer11
procWeight = 1.0
if options.datType != 'data':
procWeight = (options.crossSection *
run_lumi[options.leptonType][options.runYear]\
[options.runType])
# setup the corrector (this links the appropriate four momenta
# into a common naming scheme
correct = setup_corrections(options.runYear , options.runType,
options.leptonType, options.datType,
options.leptonCor , options.gamCor,
options.vanilla )
ievent = long(0)
for event in tree:
ievent+=1
#print ievent,total_events,fmod(ievent/total_events,0.01)
if( not (ievent+1)%int(tick_size) or
ievent+1 == total_events ):
sys.stdout.write('\r%3.0f%s complete! (%i/%i)'%(((ievent+1)/
tick_size),
'%',
ievent+1,
total_events))
sys.stdout.flush()
# setup the common event momentum
# ell1 = lepton1, ell2 = lepton2
# gam = photon, Z = dilepton, Zg = Z+photon
correct(event)
run_idx = getRunIndex(event.run[0],options.runYear,
options.runType,options.datType,
options.leptonType)
setattr(event,'procWeight',procWeight)
setattr(event,'puWeight',1.0)
if options.datType != 'data':
setattr(event,'eventFraction',float(ievent+1)/total_events)
event.puWeight = pu_S10_CD_reweight(event.nTruePU[0])
#selected_z = []
#selected_pho_nosihih = []
#selected_pho = []
#bad_leptons = []
if options.datType == 'data':
# kill run 170722
# kill the obvious pile up combinatorial event
if ( event.run[0] == 170722 or
(event.run[0] == 166512 and
event.lumi[0] == 1678 and
event.evt[0] == 1822682238) ):
continue
bestLLG = None
bestZdiff = -1
for i in range(event.N_PATFinalState):
cuts.getCutflow('trigger')(event,i)
if options.exlProc and not cuts.getCutflow('trigger') :
continue
cuts.getCutflow('pho')(event,i)
cuts.getCutflow('leptons')(event,i)
if ( options.exlProc and
not cuts.getCutflow('leptons') and
not cuts.getCutflow('pho') ):
continue
cuts.getCutflow('z')(event,i)
if options.exlProc and not cuts.getCutflow('z'):
continue
if ( cuts.getCutflow('trigger') and
cuts.getCutflow('leptons') and
cuts.getCutflow('pho') and
cuts.getCutflow('z') ):
thisZdiff = abs(Z_POLE-event.Z[i].M())
if( cuts.getCut('mindr')[0](event.ell1[i],
event.ell2[i],
event.gam[i]) and
(thisZdiff < bestZdiff or bestLLG is None) ):
bestZdiff = thisZdiff
bestLLG = i
#event object selection done
if options.exlProc and bestLLG is None:
continue
bestZ = bestLLG
if bestLLG is not None:
setattr(event,'ell1SF',1.0)
setattr(event,'ell2SF',1.0)
#if run_idx != -1:
# event.ell1SF = leptonSF_nominal(event.nGoodVtx,
# getattr(event,lepton_info['pt'])[idx1],
# getattr(event,lepton_info['eta'])[idx1],
# run_idx,
# options.leptonType)
# event.ell2SF = leptonSF_nominal(event.nGoodVtx,
# getattr(event,lepton_info['pt'])[idx2],
# getattr(event,lepton_info['eta'])[idx2],
# run_idx,
# options.leptonType)
setattr(event,'bestZ',bestLLG)
outTrees.bestZTree(event,tm)
#tm.fillTree('%s_zs'%treeName,{})
#bestPhoNoSihih = None
#bestPhoNoSihihPt = -1
#for idxph in selected_pho_nosihih:
# pho.SetPtEtaPhiM(event.phoCorEt[idxph],
# event.phoEta[idxph],
# event.phoPhi[idxph],
# 0.0)
# if bestPhoNoSihih is None or pho.Pt() > bestPhoNoSihihPt:
# if ( bestZ is not None and
# cuts.getCut('mindr')[0](event.bestZLeg1,
# event.bestZLeg2,
# pho) ):
# bestPhoNoSihih = idxph
# bestPhoNoSihihPt = pho.Pt()
# elif( bestZ is None ):
# bestPhoSihih = idxph
# bestPhoSihihPt = pho.Pt()
bestPho = bestLLG #and bestPhoNoSihih is None: (below)
if options.exlProc and bestPho is None:
continue
if bestPho is not None:
setattr(event,'phoSF',1.0)
#if run_idx != -1:
# event.phoSF = phoSF_nominal(event.nGoodVtx,
# event.phoEt[bestPho],
# event.phoEta[bestPho],
# run_idx)
setattr(event,'bestPho',bestPho)
#if bestPhoNoSihih is not None:
# setattr(event,'phoNoSihihSF',event.phoSF)
# setattr(event,'bestPhoNoSihihIdx',bestPho)
# setattr(event,'bestPhoNoSihih',pho)
#elif bestPhoNoSihih is not None:
# pho.SetPtEtaPhiM(event.phoCorEt[bestPhoNoSihih],
# event.phoEta[bestPhoNoSihih],
# event.phoPhi[bestPhoNoSihih],
# 0.0)
# setattr(event,'phoNoSihihSF',1.0)
# if run_idx != -1:
# event.phoNoSihihSF = phoSF_nominal(event.nGoodVtx,
# event.phoEt[bestPhoNoSihih],
# event.phoEta[bestPhoNoSihih],
# run_idx)
# setattr(event,'bestPhoNoSihihIdx',bestPhoNoSihih)
# setattr(event,'bestPhoNoSihih',pho)
if bestLLG is not None:
#if bestPhoNoSihih is not None:
# thezg = event.bestZ + event.bestPhoNoSihih
# setattr(event,'bestZGNoSihih',thezg)
# outTrees.bestZGTreeNoSihih(event,tm)
# tm.fillTree('EventTree_zgs_nosihih',{})
hzg_r94cat = hzg_4cat_r9based[leptonType](event,bestLLG)
setattr(event,'bestZG_r94cat',hzg_r94cat)
hzg_r94cat_mod = \
hzg_4cat_r9based_mod[leptonType](event,bestLLG)
setattr(event,'bestZG_r94cat_mod',hzg_r94cat_mod)
thezg = event.Zg[bestLLG]
selected_events.append((event.run[bestLLG],
event.lumi[bestLLG],
event.evt[bestLLG]))
setattr(event,'bestZG',thezg)
outTrees.bestZGTree(event,tm)
pu_weight_sum += event.puWeight
#tm.fillTree('%s_zgs'%treeName,{})
tree = None
in_file.Close()
del in_file
#make a nice file name
input_file = args[0]
nameparts = input_file[input_file.rfind('/')+1:]
nameparts = nameparts.split('.')
#output selected event numbers to file if needed
print
print 'Selected %i (%.2f) events after processing!'%(len(selected_events),
pu_weight_sum)
try:
os.makedirs(options.prefix)
print 'Created prefix directory: %s'%options.prefix
except os.error:
print 'Prefix directory: %s already exists'%options.prefix
if options.dumpSelectedEvents:
#sort events
selected_events.sort(key=lambda event: event[2])
selected_events.sort(key=lambda event: event[1])
selected_events.sort(key=lambda event: event[0])
evf = open(options.prefix +
'%s_%s_%s_processed.%s'%('_'.join(nameparts[:-1]),
options.runType,
options.leptonType,
'txt'),
'w')
for ev in selected_events:
evf.write('Run, Lumi, Event #:\t%i\t%i\t%i\n'%ev)
evf.close()
#push all of our output trees to a file
outFileName = ''
if options.vanilla:
outFileName = '%s_%s_%s_%s_%s_processed.%s'\
%('_'.join(nameparts[:-1]),
options.runType,
options.datType,
options.leptonType,
'vanilla',
nameparts[-1])
else:
outFileName = '%s_%s_%s_%s_%s_%s_processed.%s'\
%('_'.join(nameparts[:-1]),
options.runType,
options.datType,
options.leptonType,
options.leptonCor,
options.gamCor,
nameparts[-1])
hEventCount = TH1I('eventCount','Total Events Processed',1,0,1)
hEventCount.SetBinContent(1,nEvents_total)
metaTList = TList()
for tree in metaInfoTrees:
metaTList.Add(tree)
metaTree = TTree.MergeTrees(metaTList)
outf = TFile.Open(options.prefix + outFileName,'RECREATE')
outf.cd()
metaTree.Write()
hEventCount.Write()
tm.write()
outf.Close()
ROOT.gDirectory.cd(pwd)
def init_pdfs(fit, params, prefix, signal):
'''
Initialize RooFit PDFs from parameter dictionary
:param MassFit fit: - MassFit instance
:param dict params: - parameter dictionary
:param str prefix: - pdf name prefix
:param bool signal: - signal pdf
:return: (pdf, components) with pdf - Composit pdf, components - list of component pdfs
:rtype: tuple
'''
# Build recursive composit pdf:
# M(x) = f_sig*S(x) + (1-f_sig){f_peak*P(x) + (1-f_peak)*B(x)}
#
# This avoids problems with sum(fractions) > 1
# See chapter 3 of RooFit Users Manual
#
# Store all auto generated obejcts in TLists. Otherwise python will destroy
# them as soon as this function ends
_pdf = None #: Composit PDF to return
_components = TList() #: List of component PDFs
_components_all = TList() #: List of component PDFs
_fracs = TList() #: List of fractions
_funcs = TList() #: List of formula variables
_params = { prefix+"_"+fit.mass_name: fit.mass }
_i = 1
_n_comps = len(params["components"])
for _comp in params["components"]:
# Create parameters
_comp_params = TList()
_comp_constrs = TList()
for _par in _comp["params"]:
_name = prefix + "_" + _par["name"]
if _name in _params:
_comp_params.append(_params[_name])
else:
if "random" in _par and _par["random"] == True:
# Generate starting value and validity range
_min = random.uniform(_par["min"], _par["value"])
_max = random.uniform(_par["value"], _par["max"])
_value = random.uniform(_min, _max)
_par["random"] = False
# Store obtained values
_par["min"] = _min
_par["max"] = _max
_par["value"] = _value
_var = RooRealVar(
_name, _par["title"], _value,
_min, _max, _par["units"]
)
else:
_var = RooRealVar(
_name, _par["title"], _par["value"],
_par["min"], _par["max"], _par["units"]
)
fit.parameters.push_back(_var)
_comp_params.Add(_var)
_params[_name] = _var
if "constraint" in _par:
_constr = RooGaussian(
_name+"_constr",
_par["title"]+"_constr",
_var,
RooFit.RooConst(_par["constraint"]["mean"]),
RooFit.RooConst(_par["constraint"]["sigma"])
)
fit.constraints.push_back(_constr)
_comp_constrs.Add(_constr)
# Store mean and sigma of core part of the signal PDF
if _i == 1 and signal == True:
fit.sig_mass = _comp_params.At(0)
fit.sig_sigma = _comp_params.At(1)
_name = prefix+"_"+_comp["name"]
# Initialize component
if _comp["type"] not in supported_pdfs:
raise Exception("Unknown PDF type: %s" % _comp["type"])
if _comp["type"] == "RooAddPdf":
(_sum_pdf, _sum_components, _sum_params) = init_pdfs(fit, _comp, _comp['name'], signal)
_components_all.AddAll(_sum_components)
_components.Add(_sum_pdf)
_params.update(_sum_params)
elif _comp["type"] == "RooGaussian":
_components.Add(RooGaussian(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1))
)
elif _comp["type"] == "RooParamGaussian":
_v = RooFormulaVar(
_name+"_variable",
"",
"@0*@1",
RooArgList(
_comp_params.At(1),
_comp_params.At(2))
)
_funcs.Add(_v)
_components.Add(RooGaussian(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_v)
)
elif _comp["type"] == "RooParamGaussianOffset":
_m = RooFormulaVar(
_name+"_var_mean",
"",
"@0+@1",
RooArgList(
_comp_params.At(0),
_comp_params.At(1))
)
_s = RooFormulaVar(
_name+"_var_sigma",
"",
"@0*@1",
RooArgList(
_comp_params.At(2),
_comp_params.At(3))
)
_funcs.Add(_m)
_funcs.Add(_s)
_components.Add(RooGaussian(
_name,
_comp["title"],
fit.mass,
_m,
_s)
)
elif _comp["type"] == "RooPolynomial":
if len(_comp_params):
_components.Add(RooPolynomial(
_name,
_comp["title"],
fit.mass,
RooArgList(_comp_params))
)
else:
_components.Add(RooPolynomial(
_name,
_comp["title"],
fit.mass)
)
elif _comp["type"] == "RooChebychev":
_components.Add(RooChebychev(
_name,
_comp["title"],
fit.mass,
RooArgList(_comp_params))
)
elif _comp["type"] == "RooExponential":
_components.Add(RooExponential(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0))
)
elif _comp["type"] == "RooVoigtian":
_components.Add(RooVoigtian(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2))
)
elif _comp["type"] == "RooCBShape":
_components.Add(RooCBShape(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3))
)
elif _comp["type"] == "RooParamCBShape":
_v = RooFormulaVar(
_name+"_variable",
"",
"@0*@1",
RooArgList(
_comp_params.At(1),
_comp_params.At(2))
)
_funcs.Add(_v)
_components.Add(RooCBShape(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_v,
_comp_params.At(3),
_comp_params.At(4))
)
elif _comp["type"] == "RooDoubleCBShape":
_components.Add(RooDoubleCBShape(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5))
)
elif _comp["type"] == "RooCutCBShape":
_components.Add(RooCutCBShape(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4))
)
elif _comp["type"] == "RooArgusBG":
_components.Add(RooArgusBG(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1))
)
elif _comp["type"] == "RooRArgusBG":
_v = RooFormulaVar(
_name+"_variable",
"",
"2*@0 - @1",
RooArgList(
_comp_params.At(0),
fit.mass)
)
_funcs.Add(_v)
_components.Add(RooArgusBG(
_name,
_comp["title"],
_v,
_comp_params.At(0),
_comp_params.At(1))
)
elif _comp["type"] == "RooIpatia":
_components.Add(RooIpatia(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5),
_comp_params.At(6))
)
elif _comp["type"] == "RooIpatia2":
_components.Add(RooIpatia2(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5),
_comp_params.At(6),
_comp_params.At(7),
_comp_params.At(8))
)
elif _comp["type"] == "RooCassandra":
_components.Add(RooCassandra(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3))
)
elif _comp["type"] == "RooAsymCassandra":
_components.Add(RooAsymCassandra(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4))
)
elif _comp["type"] == "RooDecay":
_r = RooGaussModel(
_name+"_resolution",
_comp["title"]+"_resolution",
fit.mass,
_comp_params.At(0),
_comp_params.At(2)
)
_components.Add(RooDecay(
_name,
_comp["title"],
fit.mass,
_comp_params.At(1),
_r,
RooDecay.DoubleSided)
)
_funcs.Add(_r)
elif _comp["type"] == "RooDecayLeft":
_r = RooGaussModel(
_name+"_resolution",
_comp["title"]+"_resolution",
fit.mass,
_comp_params.At(0),
_comp_params.At(2)
)
_components.Add(RooDecay(
_name,
_comp["title"],
fit.mass,
_comp_params.At(1),
_r,
RooDecay.Flipped)
)
_funcs.Add(_r)
elif _comp["type"] == "RooDecayRight":
_r = RooGaussModel(
_name+"_resolution",
_comp["title"]+"_resolution",
fit.mass,
_comp_params.At(0),
_comp_params.At(2)
)
_components.Add(RooDecay(
_name,
_comp["title"],
fit.mass,
_comp_params.At(1),
_r,
RooDecay.SingleSided)
)
_funcs.Add(_r)
elif _comp["type"] == "RooExpGaussExp":
_components.Add(RooExpGaussExp(
_name,
_comp["title"],
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3))
)
elif _comp["type"] == "RooHistPdf":
if 'config' not in _comp:
raise Exception("Missing 'config' section for RooHistPdf.")
if 'file' not in _comp['config']:
raise Exception("Missing 'file' key in the 'config' section for RooHistPdf.")
if 'name' not in _comp['config']:
raise Exception("Missing 'name' key in the 'config' section for RooHistPdf.")
_f = TFile(_comp['config']['file'])
_pdf = _f.Get(_comp['config']['name'])
_components.Add(_pdf)
elif _comp["type"] == "Conv_RooDecay_RooBreitWigner":
_r1 = RooGaussModel(
_name+"_resolution_1",
_comp["title"]+"_resolution_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(2)
)
_f1 = RooDecay(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(1),
_r1,
RooDecay.DoubleSided
)
_f2 = RooBreitWigner(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(3),
_comp_params.At(4)
)
_funcs.Add(_r1)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooNumConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooDecay_RooBreitWigner":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_r1 = RooGaussModel(
_name+"_resolution_1",
_comp["title"]+"_resolution_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(2)
)
_f1 = RooDecay(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(1),
_r1,
RooDecay.DoubleSided
)
_f2 = RooBreitWigner(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(3),
_comp_params.At(4)
)
_funcs.Add(_r1)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooDecay_RooCBShape":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_r1 = RooGaussModel(
_name+"_resolution_1",
_comp["title"]+"_resolution_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(2)
)
_f1 = RooDecay(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(1),
_r1,
RooDecay.DoubleSided
)
_f2 = RooCBShape(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5),
_comp_params.At(6)
)
_funcs.Add(_r1)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooCassandra_RooGaussian":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_f1 = RooCassandra(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2)
)
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(3),
_comp_params.At(4)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooAsymCassandra_RooGaussian":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_f1 = RooAsymCassandra(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4)
)
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(5),
_comp_params.At(6)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
#_pdf = RooFFTConvPdf(
# _name,
# _comp["title"],
# fit.mass,
# _f1,
# _f2
# )
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f2,
_f1
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooAsymCassandra_RooDoubleGaussian":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_v = RooFormulaVar(
_name+"_variable",
"",
"@0*@1",
RooArgList(
_comp_params.At(6),
_comp_params.At(7))
)
_funcs.Add(_v)
_f1 = RooAsymCassandra(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4)
)
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(5),
_comp_params.At(6)
)
_f3 = RooGaussian(
_name+"_comp_3",
_comp["title"]+"_comp_3",
fit.mass,
_comp_params.At(5),
_v
)
_f4 = RooAddPdf(
_name,
_comp["title"],
RooArgList(_f2, _f3),
RooArgList(_comp_params.At(8))
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_funcs.Add(_f3)
_funcs.Add(_f4)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f4,
_f1
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "Conv_RooAsymCassandra_RooGaussian":
_f1 = RooAsymCassandra(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4)
)
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(5),
_comp_params.At(6)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooNumConvPdf(
_name,
_comp["title"],
fit.mass,
_f2,
_f1
)
# Does not work
#_pdf.setConvolutionWindow(_comp_params.At(5), _comp_params.At(6), 6.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooAsymCassandra3_RooGaussian":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_f1 = RooAsymCassandra3(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5),
_comp_params.At(6)
)
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(7),
_comp_params.At(8)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f2,
_f1
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooCassandra_RooCBShape":
# Define sampling frequency
fit.mass.setBins(50000,"fft") ;
_f1 = RooCassandra(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2)
)
_f2 = RooCBShape(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5),
_comp_params.At(6)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_pdf.setBufferFraction(100.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooCassandra3_RooCBShape":
# Define sampling frequency
fit.mass.setBins(50000,"fft") ;
_f1 = RooCassandra3(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3)
)
_f2 = RooCBShape(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(4),
_comp_params.At(5),
_comp_params.At(6),
_comp_params.At(7)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_pdf.setBufferFraction(100.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooHistPdf_RooGaussian":
# Load reference ROOT tree
_ref_full_ch = TChain(_comp['config']['tree'])
_ref_full_ch.Add(_comp['config']['files'])
# Run selection
_ref_ch = _ref_full_ch.CopyTree(_comp['config']['selection'])
_bins = fit.mass.getBins()
fit.mass.setBins(_comp['config']['bins'])
# Create hist PDF
_data = RooDataSet(
'ds_' + _name,
'',
RooArgSet(fit.mass),
RooFit.Import(_ref_ch)
)
_hist = _data.binnedClone()
_f1 = RooHistPdf(
name+'_histpdf',
_comp['title']+'_histpdf',
RooArgSet(fit.mass),
_hist,
2 # Order of interpolation function
)
fit.mass.setBins(_bins)
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_f2 = RooGaussModel(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(0),
_comp_params.At(1)
)
_funcs.Add(_hist)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f2,
_f1
)
_pdf.setBufferFraction(5.0)
_components.Add(_pdf)
elif _comp["type"] == "Conv_RooHistPdf_RooGaussian":
if 'config' not in _comp:
raise Exception("Missing 'config' section for RooHistPdf.")
if 'file' not in _comp['config']:
raise Exception("Missing 'file' key in the 'config' section for RooHistPdf.")
if 'name' not in _comp['config']:
raise Exception("Missing 'name' key in the 'config' section for RooHistPdf.")
_file = TFile(_comp['config']['file'])
_f1 = _file.Get(_comp['config']['name'])
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(0),
_comp_params.At(1)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooNumConvPdf(
_name,
_comp["title"],
fit.mass,
_f2,
_f1
)
_components.Add(_pdf)
elif _comp["type"] == "FFT_RooDoubleCBShape_RooGaussian":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_f1 = RooDoubleCBShape(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3),
_comp_params.At(4),
_comp_params.At(5)
)
_f2 = RooGaussian(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(6),
_comp_params.At(7)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f1,
_f2
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
elif _comp["type"] == "FFT_2xCBShape_RooGaussian":
# Define sampling frequency
fit.mass.setBins(10000,"fft") ;
_cb_frac = RooRealVar(
_name+"_cb_frac",
_name+"_cb_frac",
0.1, 0.0, 1.0)
_f1 = RooCBShape(
_name+"_comp_1",
_comp["title"]+"_comp_1",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(2),
_comp_params.At(3)
)
_f2 = RooCBShape(
_name+"_comp_2",
_comp["title"]+"_comp_2",
fit.mass,
_comp_params.At(0),
_comp_params.At(1),
_comp_params.At(4),
_comp_params.At(5)
)
_f3 = RooAddPdf(
_name+"_comp_3",
_comp["title"]+"_comp_3",
RooArgList(_f1, _f2),
RooArgList(_cb_frac),
kTRUE)
_f4 = RooGaussian(
_name+"_comp_4",
_comp["title"]+"_comp_4",
fit.mass,
_comp_params.At(6),
_comp_params.At(7)
)
_funcs.Add(_f1)
_funcs.Add(_f2)
_funcs.Add(_f3)
_funcs.Add(_f4)
_funcs.Add(_cb_frac)
_pdf = RooFFTConvPdf(
_name,
_comp["title"],
fit.mass,
_f3,
_f4
)
_pdf.setBufferFraction(50.0)
_components.Add(_pdf)
else:
raise Exception("Unknown PDF type: "+_comp["type"])
if _i < _n_comps:
_f_v = 0.1
_f_min = 0.0
_f_max = 1.0
if "fraction" in _comp:
_f_v = _comp["fraction"]["value"]
_f_min = _comp["fraction"]["min"]
_f_max = _comp["fraction"]["max"]
_f = RooRealVar(
prefix+"_frac_"+_comp["name"],
prefix+" component "+_comp["name"]+" fraction",
_f_v, _f_min, _f_max)
if "fraction" in _comp and "constraint" in _comp["fraction"]:
_constr = RooGaussian(
_name+"_frac_constr",
_name+"_frac_constr",
_f,
RooFit.RooConst(_comp["fraction"]["constraint"]["mean"]),
RooFit.RooConst(_comp["fraction"]["constraint"]["sigma"])
)
fit.constraints.push_back(_constr)
_comp_constrs.Add(_constr)
_fracs.Add(_f)
_i += 1
if _n_comps == 1:
_pdf = _components.At(0)
else:
# Make sure we are creating a recursive composit PDF
_pdf = RooAddPdf(
prefix+"_pdf",
prefix+" PDF",
RooArgList(_components),
RooArgList(_fracs),
kTRUE)
_components_all.AddAll(_components)
return (_pdf, _components_all, _params)
def splitData():
""" Sometimes this segfaults. No idea why. Just re-run and it's fine. """
f1 = TFile("./data/malbek_data.root")
tree0 = f1.Get("malbek_wrt")
axPeaks = [1.739, 1.836, 2.307, 2.464]
# declare as arrays s/t ROOT branches work. access values with e.g. ene[0] = 1.
ene0, wt0, shift = array('d', [0.]), array('d', [0.]), array('d', [0.])
tree0.SetBranchAddress("energy_keV", ene0)
tree0.SetBranchAddress("weight", wt0)
tList = TList()
tVec = [0., 0., 0., 0.]
tmp = TFile("./data/malbek_splitData.root", "RECREATE")
for i in range(len(axPeaks)):
ene, wt = array('d', [0.]), array('d', [0.])
shift = axPeaks[len(axPeaks) - 1] - axPeaks[i]
tVec[i] = TTree("t%d" % i, "t%d" % i)
tVec[i].Branch("energy_keV", ene, "energy_keV/D")
tVec[i].Branch("weight", wt, "weight/D")
for j in range(tree0.GetEntries()):
tree0.GetEntry(j)
ene[0], wt[0] = ene0[0], wt0[0]
ene[0] += shift
tVec[i].Fill()
print "axPeaks: %d tree %d - %d entries shift %.3f keV" % (
len(axPeaks), len(tVec), tVec[i].GetEntries(), shift)
tList.Add(tVec[i])
tVec[i].Write()
tree1 = ROOT.TTree.MergeTrees(tList)
tree1.SetName("mergeTree")
tree1.SetTitle("mergeTree")
print "Trees merged, with %d entries total." % tree1.GetEntries()
tree1.Write()
# -- create diagnostic shifted & merged spectrum --
malbekExposure = 89.5
binSize = 0.04
eLo, eHi = 0.8, 5.
nBins = int((eHi - eLo) / binSize + 0.5)
h0 = H1D(tree0, nBins, eLo, eHi, "energy_keV", "weight")
h0.SetLineColor(ROOT.kBlack)
h0.SetLineWidth(2)
h0.Scale(1. / malbekExposure)
h1 = H1D(tVec[0], nBins, eLo, eHi, "energy_keV", "weight")
h1.SetLineColorAlpha(ROOT.kBlue, 0.5)
h1.Scale(1. / malbekExposure)
h2 = H1D(tVec[1], nBins, eLo, eHi, "energy_keV", "weight")
h2.SetLineColorAlpha(ROOT.kGreen, 0.5)
h2.Scale(1. / malbekExposure)
h3 = H1D(tVec[2], nBins, eLo, eHi, "energy_keV", "weight")
h3.SetLineColorAlpha(ROOT.kMagenta, 0.5)
h3.Scale(1. / malbekExposure)
h4 = H1D(tVec[3], nBins, eLo, eHi, "energy_keV", "weight")
h4.SetLineColor(ROOT.kCyan)
h4.Scale(1. / malbekExposure)
hAdd = TH1D("hAdd", "", nBins, eLo, eHi)
hAdd.Add(h1)
hAdd.Add(h2)
hAdd.Add(h3)
hAdd.Add(h4)
hAdd.SetLineColor(ROOT.kBlack)
hAdd.SetLineWidth(2)
hAdd.SetMinimum(0)
hAdd.SetMaximum(2)
ymax = hAdd.GetMaximum()
hAdd.GetXaxis().SetTitle("Energy (keV)")
hAdd.GetYaxis().SetTitle("Counts / kg-d")
c = TCanvas("c", "Bob Ross's Canvas", 1100, 800)
hAdd.Draw("hist")
h0.Draw("hist same")
h1.Draw("hist same")
h2.Draw("hist same")
h3.Draw("hist same")
h4.Draw("hist same")
# Draw lines around the gaussian fit ROI, using 2 sigma of the energy resolution
fitWin = 3 * getSigma(axPeaks[3])
print "Malbek resolution at %.2f keV is %.2f" % (axPeaks[3],
getSigma(axPeaks[3]))
print "Set 3-sigma fit region to %.2f - %.2f" % (axPeaks[3] - fitWin,
axPeaks[3] + fitWin)
l1 = ROOT.TLine(axPeaks[3], 0., axPeaks[3], ymax)
l1.SetLineColor(ROOT.kRed)
l1.SetLineWidth(2)
l1.Draw("same")
l2 = ROOT.TLine(axPeaks[3] + fitWin, 0., axPeaks[3] + fitWin, ymax)
l2.SetLineColorAlpha(ROOT.kRed, 0.5)
l2.SetLineWidth(2)
l2.Draw("same")
l3 = ROOT.TLine(axPeaks[3] - fitWin, 0., axPeaks[3] - fitWin, ymax)
l3.SetLineColorAlpha(ROOT.kRed, 0.5)
l3.SetLineWidth(2)
l3.Draw("same")
leg = ROOT.TLegend(0.6, 0.6, 0.85, 0.85)
leg.AddEntry(hAdd, "Shifted+Summed", "l")
leg.AddEntry(h4, "peak-%.3f (unshifted)" % (axPeaks[3]), "l")
leg.AddEntry(h3, "peak-%.3f" % (axPeaks[2]), "l")
leg.AddEntry(h2, "peak-%.3f" % (axPeaks[1]), "l")
leg.AddEntry(h1, "peak-%.3f" % (axPeaks[0]), "l")
leg.AddEntry(l1, "3-sigma fit region", "l")
leg.Draw("same")
c.Print("./plots/shiftSpec.pdf")
def stackHistograms(t_plots, t_processList, l_histoList, l_legendList, l_textList, l_axisList, saveAs,l_ratioList, saveString, tagText):
'''
PURPOSE:
Function to create stacked plots and save them to the local disk.
This function will:
* Create a stacked plot
* Create a ratio plot
* Allow for Blinding
* Save the canvas as requested
'''
# Release the variables from the lists
h_st, location_suf, name, c_x, c_y, v_rebin, xMin, xMax, doBlinding, b_low, b_high = l_histoList
l_st, l_x1, l_y1, l_x2, l_y2, l_textSize = l_legendList
t_st, plotText, t_textSize, t_alignment, t_start, t_gap, t_x = l_textList
a_st, xLabel, yLabel, xOffset, yOffset, a_labelSize, a_textSize, y_scale = l_axisList
r_st, doRatio, r_yLabel, r_xOffset, r_yOffset, r_labelSize, r_textSize = l_ratioList
len_plots = len(t_plots)
plotText = plotText + tagText
l_overlay = []
l_data = []
sh = THStack('sh', '')
t_legend = []
listMC = TList()
for i in xrange(len_plots):
process, location_pre, v_colour, v_scale, ovack, sigrouta, l_marker, sel = t_processList[i]
histogram = rebin(t_plots[i][0], v_rebin)
histogram.Scale(float(v_scale))
histogram.SetLineWidth(1)
histogram.SetLineColor(int(v_colour))
l_legendLine = [t_plots[i][0], process, l_marker]
t_legend.append(l_legendLine)
if sigrouta == "DATA" and int(doBlinding):
histogram = blindingPlots(histogram, b_low, b_high)
if ovack == "STACK":
if sigrouta == "BACKGROUND":
listMC.Add(histogram)
histogram.SetFillColor(int(v_colour))
sh.Add(histogram)
elif ovack == "OVERLAY" and sigrouta != "DATA":
l_overlay.append(histogram)
elif ovack == "OVERLAY" and sigrouta == "DATA":
histogram.SetMarkerStyle(8)
histogram.SetMarkerColor(1)
l_data.append(histogram)
else:
print "\n%s or %s are not a valid options" % (sigrouta, ovack)
sys.exit(1)
mergeMC = histogram.Clone('mergeMC')
mergeMC.Reset()
mergeMC.Merge(listMC)
gROOT.SetBatch(1)
c = TCanvas('c', 'c', int(c_x), int(c_y))
gStyle.SetOptStat(0)
if int(doRatio):
m_Pad = TPad('m_pad', 'm_pad', 0, 0.30, 1, 1)
r_Pad = TPad('r_pad', 'r_pad', 0, 0, 1, 0.30)
m_Pad.Draw()
r_Pad.Draw()
m_Pad.SetTopMargin(0.05)
m_Pad.SetBottomMargin(0.01)
r_Pad.SetTopMargin(0)
r_Pad.SetBottomMargin(0.3)
m_Pad.cd()
m_Pad.SetTicks(1)
m_Pad.Update()
else:
c.SetTicks(1)
c.Update
# Draw our plots we defined earlier. First the stacked plot, then any overlaid plots and finally data
sh.Draw()
if l_overlay:
for i in xrange(len(l_overlay)):
l_overlay[i].Draw('hist same')
h_MCerr = getStatUncert(mergeMC)
h_MCerr.SetMarkerSize(0)
h_MCerr.SetFillColor(921)
h_MCerr.SetFillStyle(3344)
h_MCerr.Draw('e2s same')
t_legend.append([h_MCerr, 'Stat Uncert.', 'f'])
if l_data:
h_data = mergeData(l_data, doBlinding, b_low, b_high)
h_data.Draw('epsames')
## Next up is to add the styling:
## 1, Axis labels
## 2. Text on the plot
## 3. Legend
if not int(doRatio):
setupAxes(sh, xLabel, yLabel, xOffset, 0.8, a_textSize, xMin, xMax, y_scale)
else:
sh.SetMinimum(0.001)
setupAxes(sh, "", yLabel, -999, yOffset, a_textSize, xMin, xMax, y_scale)
setupLegend(t_legend, l_x1, l_y1, l_x2, l_y2, l_textSize)
setupTextOnPlot(plotText, t_textSize, t_alignment, t_x, t_start, t_gap)
if int(doRatio):
r_Pad.cd()
r_Pad.SetTicks(1)
r_Pad.Update()
l_mc = TList()
l_data = TList()
for i in xrange(len_plots):
l_histogram = rebin(t_plots[i][0], v_rebin)
process, location_pre, v_colour, v_scale, ovack, sigrouta, l_marker, tag = t_processList[i]
if sigrouta == "SIGNAL":
l_mc.Add(l_histogram)
elif sigrouta == "BACKGROUND":
l_mc.Add(l_histogram)
elif sigrouta == "DATA":
l_data.Add(l_histogram)
elif sigrouta == "OVERLAY":
pass
else:
print "\nOption %s not available" % (sigrouta)
mh_MC = l_histogram.Clone('mh_MC')
mh_MC.Merge(l_mc)
h_statMC = getRelError(mh_MC)
h_statMC.SetMarkerSize(0)
h_statMC.SetFillColor(921)
h_statMC.SetFillStyle(3344)
h_statMC.Draw('e2s')
setupAxes(h_statMC, xLabel, r_yLabel, r_xOffset, r_yOffset, r_textSize, xMin, xMax, 1)
h_statMC.GetYaxis().SetRangeUser(-0.38, 0.38)
mh_data = l_histogram.Clone('mh_data')
mh_data.Merge(l_data)
h_dataMC = getRatio(mh_data, mh_MC, doBlinding, b_low, b_high)
h_dataMC.Draw('epsames')
h_line = TLine(float(xMin), 0, float(xMax), 0)
h_line.SetLineWidth(2)
h_line.SetLineColor(1)
h_line.SetLineStyle(2)
h_line.Draw('same')
savePlots(c, saveString, saveAs)
def fhadd(self, prefix="", force=False, verbose=False, slow=True):
""" taken from https://root.cern.ch/phpBB3/viewtopic.php?t=14881
This function will merge objects from a list of root files and write them
to a target root file. The target file is newly created and must not
exist, or if -f ("force") is given, must not be one of the source files.
IMPORTANT: It is required that all files have the same content!
Fast but memory hungry alternative to ROOT's hadd.
Arguments:
target -- name of the target root file
sources -- list of source root files
classname -- restrict merging to objects inheriting from classname
force -- overwrite target file if exists
"""
target = prefix + self.Name + ".root"
sources = [j.Output for j in self.Jobs]
TH1.AddDirectory(False)
# check if target file exists and exit if it does and not in force mode
if not force and os.path.exists(target):
raise RuntimeError("target file %s exists" % target)
# open the target file
print "fhadd Target file:", target
outfile = TFile(target, "RECREATE")
# open the seed file - contents is looked up from here
seedfilename = sources[0]
print "fhadd Source file 1", seedfilename
seedfile = TFile(seedfilename)
# get contents of seed file
print "looping over seed file"
contents = self.loop(seedfile)
print "done %d objects are ready to be merged" % len(contents)
if (verbose):
for c in contents:
print c
# open remaining files
otherfiles = []
for n, f in enumerate(sources[1:]):
print "fhadd Source file %d: %s" % (n + 2, f)
otherfiles.append(TFile(f))
# loop over contents and merge objects from other files to seed file objects
for n, (path, hname) in enumerate(contents):
print "fhadd Target object: %s" % os.path.join(path, hname)
obj_path = os.path.join(path, hname)
obj_ = seedfile.Get(obj_path[1:])
outfile.cd('/')
# create target directory structure
for d in path.split('/')[1:]:
directory = gDirectory.GetDirectory(d)
if not directory:
gDirectory.mkdir(d).cd()
else:
gDirectory.cd(d)
obj = None
if obj_.InheritsFrom("TTree"):
obj = obj_.CloneTree()
else:
obj = obj_.Clone()
# merge objects
l = TList()
for o in [of.Get(obj_path[1:]) for of in otherfiles]:
l.Add(o)
obj.Merge(l)
# delete objects if in slow mode
if slow:
print "Deleting %d object(s)", l.GetEntries()
l.Delete()
# write object to target
obj.Write(obj.GetName(), TObject.kOverwrite)
print "Writing and closing file"
# let ROOT forget about open files - prevents deletion of TKeys
for f in [outfile, seedfile] + otherfiles:
gROOT.GetListOfFiles().Remove(f)
outfile.Write()
outfile.Close()
for f in [seedfile] + otherfiles:
f.Close()
def GetRootPrimitive(self, listname):
"""
Make root primitives (for root IO)
"""
result = TList()
result.SetName(listname)
tracklist = TList()
tracklist.SetName("trackContainers")
for name, tc in self.__trackContainers.iteritems():
tracklist.Add(tc.GetRootPrimitive("trackcontainer_%s" % (name)))
clusterlist = TList()
clusterlist.SetName("clusterContainers")
for name, cc in self.__clusterContainers.iteritems():
clusterlist.Add(cc.GetRootPrimitive("clustercontainer_%s" %
(name)))
result.Add(tracklist)
result.Add(clusterlist)
return result
def test2Lists(self):
"""Test list/TList behavior and compatibility"""
l = TList()
l.Add(TObjString('a'))
l.Add(TObjString('b'))
l.Add(TObjString('c'))
l.Add(TObjString('d'))
l.Add(TObjString('e'))
l.Add(TObjString('f'))
l.Add(TObjString('g'))
l.Add(TObjString('h'))
l.Add(TObjString('i'))
l.Add(TObjString('j'))
self.assertEqual(len(l), 10)
self.assertEqual(l[3], 'd')
self.assertEqual(l[-1], 'j')
self.assertRaises(IndexError, l.__getitem__, 20)
self.assertRaises(IndexError, l.__getitem__, -20)
self.assertEqual(list(l),
['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j'])
l[3] = TObjString('z')
self.assertEqual(list(l),
['a', 'b', 'c', 'z', 'e', 'f', 'g', 'h', 'i', 'j'])
del l[2]
self.assertEqual(list(l),
['a', 'b', 'z', 'e', 'f', 'g', 'h', 'i', 'j'])
self.assert_(TObjString('b') in l)
self.assert_(not TObjString('x') in l)
self.assertEqual(list(l[2:6]), ['z', 'e', 'f', 'g'])
self.assertEqual(list(l[2:6:2]), ['z', 'f'])
self.assertEqual(list(l[-5:-2]), ['f', 'g', 'h'])
self.assertEqual(list(l[7:]), ['i', 'j'])
self.assertEqual(list(l[:3]), ['a', 'b', 'z'])
del l[2:4]
self.assertEqual(list(l), ['a', 'b', 'f', 'g', 'h', 'i', 'j'])
l[2:5] = [TObjString('1'), TObjString('2')]
self.assertEqual(list(l), ['a', 'b', '1', '2', 'i', 'j'])
l[6:6] = [TObjString('3')]
self.assertEqual(list(l), ['a', 'b', '1', '2', 'i', 'j', '3'])
l.append(TObjString('4'))
self.assertEqual(list(l), ['a', 'b', '1', '2', 'i', 'j', '3', '4'])
l.extend([TObjString('5'), TObjString('j')])
self.assertEqual(list(l),
['a', 'b', '1', '2', 'i', 'j', '3', '4', '5', 'j'])
self.assertEqual(l.count('b'), 1)
self.assertEqual(l.count('j'), 2)
self.assertEqual(l.count('x'), 0)
self.assertEqual(l.index(TObjString('i')), 4)
self.assertRaises(ValueError, l.index, TObjString('x'))
l.insert(3, TObjString('6'))
l.insert(20, TObjString('7'))
l.insert(-1, TObjString('8'))
self.assertEqual(
list(l),
['8', 'a', 'b', '1', '6', '2', 'i', 'j', '3', '4', '5', 'j', '7'])
self.assertEqual(l.pop(), '7')
self.assertEqual(l.pop(3), '1')
self.assertEqual(
list(l), ['8', 'a', 'b', '6', '2', 'i', 'j', '3', '4', '5', 'j'])
l.remove(TObjString('j'))
l.remove(TObjString('3'))
self.assertRaises(ValueError, l.remove, TObjString('x'))
self.assertEqual(list(l),
['8', 'a', 'b', '6', '2', 'i', '4', '5', 'j'])
l.reverse()
self.assertEqual(list(l),
['j', '5', '4', 'i', '2', '6', 'b', 'a', '8'])
l.sort()
self.assertEqual(list(l),
['2', '4', '5', '6', '8', 'a', 'b', 'i', 'j'])
if sys.hexversion >= 0x3000000:
l.sort(key=TObjString.GetName)
l.reverse()
else:
l.sort(lambda a, b: cmp(b.GetName(), a.GetName()))
self.assertEqual(list(l),
['j', 'i', 'b', 'a', '8', '6', '5', '4', '2'])
l2 = l[:3]
self.assertEqual(list(l2 * 3),
['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'])
self.assertEqual(list(3 * l2),
['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'])
l2 *= 3
self.assertEqual(list(l2),
['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'])
l2 = l[:3]
l3 = l[6:8]
self.assertEqual(list(l2 + l3), ['j', 'i', 'b', '5', '4'])
if sys.hexversion >= 0x3000000:
next = '__next__'
else:
next = 'next'
i = iter(l2)
self.assertEqual(getattr(i, next)(), 'j')
self.assertEqual(getattr(i, next)(), 'i')
self.assertEqual(getattr(i, next)(), 'b')
self.assertRaises(StopIteration, getattr(i, next))
fit.bkg_n = nbkg
prefix = "Bg"
if len(fit_params) > 1:
prefix = fit.name + "_" + prefix
(bkg_pdf, bkg_components, bkg_params) = init_pdfs(fit, fpars["background"], prefix, False)
all_params.update(bkg_params)
nextra = None
if 'extra' in fpars:
prefix = "Ext"
if len(fit_params) > 1:
prefix = fit.name + "_" + prefix
(extra_pdf, extra_components, extra_params) = init_pdfs(fit, fpars["extra"], prefix, False)
extra_yield = fpars["extra"]["yield"]
if 'params' in extra_yield:
_extra_params = TList()
_extra_constrs = TList()
for _par in extra_yield["params"]:
_name = _par["name"]
if _name in all_params:
_extra_params.append(all_params[_name])
else:
_var = RooRealVar(
_name, _par["title"], _par["value"],
_par["min"], _par["max"], _par["units"]
)
fit.parameters.push_back(_var)
_extra_params.Add(_var)
all_params[_name] = _var
if "constraint" in _par:
_constr = RooGaussian(
ds = genpdf['pdf'].generate(RooArgSet(*genpdf['obs']), 150000, RooFit.Verbose())
#saveEta(ds);
# HACK (2/2): restore correct eta range after generation
ds.get().find('eta').setRange(0.0, 0.5)
ds.Print('v')
for o in genpdf['obs']:
if not o.InheritsFrom('RooAbsCategory'): continue
ds.table(o).Print('v')
from ROOT import RooDataSet, RooArgSet
from ROOT import TList
mistagresultList = TList();
etaAvgList = TList();
print "**** ADDING CATEGORIES ****"
ds = ds.reduce("qt!=qt::Untagged");
xRegions = createCategoryHistogram(ds,ds.get().find('eta'),NUMCAT);
ds.addColumn(xRegions)
ds.table(xRegions).Print("v")
keepvars = [ds.get().find(name) for name in ['qt', 'qf', 'tageffRegion', 'time']]
for i in xrange(NUMCAT):
etaAvgList.AddLast(ds.reduce("tageffRegion == tageffRegion::Cat%u" % (i + 1,)).meanVar(ds.get().find('eta')));
etaAvg = ds.meanVar(ds.get().find('eta'));
dspercat = [ ds.reduce(RooArgSet(*keepvars),"tageffRegion == tageffRegion::Cat%u" % (i + 1,)) for i in xrange(NUMCAT) ]
reader.BookMVA(
"testmva",
"/home/arun/VHbbNtuples_7_6_x/CMSSW_7_6_3_for8X/src/tthAnalysis/HiggsToTauTau/test/training_2lss_1tau_TTV/weights_2lss_1tau_TTV_wCuts_10Var_15Mar2017/mvaTTHvsTTV2lss1tau_BDTG.weights.xml"
)
file = TFile(
"/home/arun/ttHAnalysis/2016/2017Feb21_fastsim_dR03mvaLoose/histograms/2lss_1tau/forBDTtraining_SS_OS/ntuple_2lss_1tau_SS_OS_all.root"
)
if process == "signal":
tree = file.Get("2lss_1tau_lepSS_sumOS_Loose/sel/evtntuple/signal/evtTree")
elif process == "TTV":
tree_ttw = file.Get(
"2lss_1tau_lepSS_sumOS_Loose/sel/evtntuple/TTW/evtTree")
tree_ttz = file.Get(
"2lss_1tau_lepSS_sumOS_Loose/sel/evtntuple/TTZ/evtTree")
list = TList()
list.Add(tree_ttw)
list.Add(tree_ttz)
tree = TTree.MergeTrees(list)
tree.SetName("bkgTree")
c1 = TCanvas()
c1.SetFillColor(10)
c1.SetBorderSize(2)
c1.SetLeftMargin(0.12)
c1.SetBottomMargin(0.12)
c1.SetRightMargin(0.05)
c1.SetLogy()
histogram_base = TH1F("histogram_base", "", 100, -1., 1.)
histogram_base.SetTitle("")
def test2Lists(self):
"""Test list/TList behavior and compatibility"""
l = TList()
l.Add(TObjString('a'))
l.Add(TObjString('b'))
l.Add(TObjString('c'))
l.Add(TObjString('d'))
l.Add(TObjString('e'))
l.Add(TObjString('f'))
l.Add(TObjString('g'))
l.Add(TObjString('h'))
l.Add(TObjString('i'))
l.Add(TObjString('j'))
self.assertEqual(len(l), 10)
self.assertEqual(l[3], 'd')
self.assertEqual(l[-1], 'j')
self.assertRaises(IndexError, l.__getitem__, 20)
self.assertRaises(IndexError, l.__getitem__, -20)
self.assertEqual(list(l),
['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j'])
l[3] = TObjString('z')
self.assertEqual(list(l),
['a', 'b', 'c', 'z', 'e', 'f', 'g', 'h', 'i', 'j'])
del l[2]
self.assertEqual(list(l),
['a', 'b', 'z', 'e', 'f', 'g', 'h', 'i', 'j'])
self.assert_(TObjString('b') in l)
self.assert_(not TObjString('x') in l)
self.assertEqual(list(l[2:6]), ['z', 'e', 'f', 'g'])
self.assertEqual(list(l[2:6:2]), ['z', 'f'])
self.assertEqual(list(l[-5:-2]), ['f', 'g', 'h'])
self.assertEqual(list(l[7:]), ['i', 'j'])
self.assertEqual(list(l[:3]), ['a', 'b', 'z'])
del l[2:4]
self.assertEqual(list(l), ['a', 'b', 'f', 'g', 'h', 'i', 'j'])
l[2:5] = [TObjString('1'), TObjString('2')]
self.assertEqual(list(l), ['a', 'b', '1', '2', 'i', 'j'])
l[6:6] = [TObjString('3')]
self.assertEqual(list(l), ['a', 'b', '1', '2', 'i', 'j', '3'])
l.append(TObjString('4'))
self.assertEqual(list(l), ['a', 'b', '1', '2', 'i', 'j', '3', '4'])
l.extend([TObjString('5'), TObjString('j')])
self.assertEqual(list(l),
['a', 'b', '1', '2', 'i', 'j', '3', '4', '5', 'j'])
self.assertEqual(l.count('b'), 1)
self.assertEqual(l.count('j'), 2)
self.assertEqual(l.count('x'), 0)
self.assertEqual(l.index(TObjString('i')), 4)
self.assertRaises(ValueError, l.index, TObjString('x'))
l.insert(3, TObjString('6'))
l.insert(20, TObjString('7'))
l.insert(-1, TObjString('8'))
if not self.legacy_pyroot:
# The pythonisation of TSeqCollection in experimental PyROOT mimics the
# behaviour of the Python list, in this case for insert.
# The Python list insert always inserts before the specified index, so if
# -1 is specified, insert will place the new element right before the last
# element of the list.
self.assertEqual(list(l), [
'a', 'b', '1', '6', '2', 'i', 'j', '3', '4', '5', 'j', '8', '7'
])
# Re-synchronize with current PyROOT's list
l.insert(0, TObjString('8'))
self.assertEqual(list(l), [
'8', 'a', 'b', '1', '6', '2', 'i', 'j', '3', '4', '5', 'j',
'8', '7'
])
l.pop(-2)
self.assertEqual(list(l), [
'8', 'a', 'b', '1', '6', '2', 'i', 'j', '3', '4', '5', 'j', '7'
])
else:
self.assertEqual(list(l), [
'8', 'a', 'b', '1', '6', '2', 'i', 'j', '3', '4', '5', 'j', '7'
])
self.assertEqual(l.pop(), '7')
self.assertEqual(l.pop(3), '1')
self.assertEqual(
list(l), ['8', 'a', 'b', '6', '2', 'i', 'j', '3', '4', '5', 'j'])
l.remove(TObjString('j'))
l.remove(TObjString('3'))
self.assertRaises(ValueError, l.remove, TObjString('x'))
self.assertEqual(list(l),
['8', 'a', 'b', '6', '2', 'i', '4', '5', 'j'])
l.reverse()
self.assertEqual(list(l),
['j', '5', '4', 'i', '2', '6', 'b', 'a', '8'])
l.sort()
self.assertEqual(list(l),
['2', '4', '5', '6', '8', 'a', 'b', 'i', 'j'])
if sys.hexversion >= 0x3000000:
l.sort(key=TObjString.GetName)
l.reverse()
else:
l.sort(lambda a, b: cmp(b.GetName(), a.GetName()))
self.assertEqual(list(l),
['j', 'i', 'b', 'a', '8', '6', '5', '4', '2'])
l2 = l[:3]
self.assertEqual(list(l2 * 3),
['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'])
self.assertEqual(list(3 * l2),
['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'])
l2 *= 3
self.assertEqual(list(l2),
['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'])
l2 = l[:3]
l3 = l[6:8]
self.assertEqual(list(l2 + l3), ['j', 'i', 'b', '5', '4'])
if sys.hexversion >= 0x3000000:
next = '__next__'
else:
next = 'next'
i = iter(l2)
self.assertEqual(getattr(i, next)(), 'j')
self.assertEqual(getattr(i, next)(), 'i')
self.assertEqual(getattr(i, next)(), 'b')
self.assertRaises(StopIteration, getattr(i, next))
currentRangeTF1List.Delete()
#for i in range(1,numCat+1):
#currentRangeTF1List.Last().IsA().Destructor(currentRangeTF1List.Last());
#s = raw_input("Press Enter to continue...");
return rangeFit
import os
os.chdir(os.environ['B2DXFITTERSROOT'] + '/tutorial/etaHist')
fileList = os.listdir(os.getcwd())
#TList containing relevant data for each eta set in directory
mainResultList = TList()
#number of tagging categories
numTagCat = 5
#parse etaHist directory for .root files
for i in fileList[:1]:
if (i[-5:] != '.root'):
continue
print i
inFile = TFile(i)
inFile.GetListOfKeys().Print()
inFile.ls()
#s = raw_input("Press Enter to continue");
theTH1DHist = TH1F()
inFile.GetObject("etaHist", theTH1DHist)
def test2Lists( self ):
"""Test list/TList behavior and compatibility"""
l = TList()
l.Add( TObjString('a') )
l.Add( TObjString('b') )
l.Add( TObjString('c') )
l.Add( TObjString('d') )
l.Add( TObjString('e') )
l.Add( TObjString('f') )
l.Add( TObjString('g') )
l.Add( TObjString('h') )
l.Add( TObjString('i') )
l.Add( TObjString('j') )
self.assertEqual( len(l), 10 )
self.assertEqual( l[3], 'd' )
self.assertEqual( l[-1], 'j' )
self.assertRaises( IndexError, l.__getitem__, 20 )
self.assertRaises( IndexError, l.__getitem__, -20 )
self.assertEqual( list(l), ['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j'] )
l[3] = TObjString('z')
self.assertEqual( list(l), ['a', 'b', 'c', 'z', 'e', 'f', 'g', 'h', 'i', 'j'] )
del l[2]
self.assertEqual( list(l), ['a', 'b', 'z', 'e', 'f', 'g', 'h', 'i', 'j'] )
self.assert_( TObjString('b') in l )
self.assert_( not TObjString('x') in l )
self.assertEqual( list(l[2:6]), ['z', 'e', 'f', 'g'] )
self.assertEqual( list(l[2:6:2]), ['z', 'f'] )
self.assertEqual( list(l[-5:-2]), ['f', 'g', 'h'] )
self.assertEqual( list(l[7:]), ['i', 'j'] )
self.assertEqual( list(l[:3]), ['a', 'b', 'z'] )
del l[2:4]
self.assertEqual( list(l), ['a', 'b', 'f', 'g', 'h', 'i', 'j'] )
l[2:5] = [ TObjString('1'), TObjString('2') ]
self.assertEqual( list(l), ['a', 'b', '1', '2', 'i', 'j'] )
l[6:6] = [ TObjString('3') ]
self.assertEqual( list(l), ['a', 'b', '1', '2', 'i', 'j', '3'] )
l.append( TObjString('4') )
self.assertEqual( list(l), ['a', 'b', '1', '2', 'i', 'j', '3', '4'] )
l.extend( [ TObjString('5'), TObjString('j') ] )
self.assertEqual( list(l), ['a', 'b', '1', '2', 'i', 'j', '3', '4', '5', 'j'] )
self.assertEqual( l.count( 'b' ), 1 )
self.assertEqual( l.count( 'j' ), 2 )
self.assertEqual( l.count( 'x' ), 0 )
self.assertEqual( l.index( TObjString( 'i' ) ), 4 )
self.assertRaises( ValueError, l.index, TObjString( 'x' ) )
l.insert( 3, TObjString('6') )
l.insert( 20, TObjString('7') )
l.insert( -1, TObjString('8') )
self.assertEqual( list(l), ['8', 'a', 'b', '1', '6', '2', 'i', 'j', '3', '4', '5', 'j', '7'] )
self.assertEqual( l.pop(), '7' )
self.assertEqual( l.pop(3), '1' )
self.assertEqual( list(l), ['8', 'a', 'b', '6', '2', 'i', 'j', '3', '4', '5', 'j'] )
l.remove( TObjString( 'j' ) )
l.remove( TObjString( '3' ) )
self.assertRaises( ValueError, l.remove, TObjString( 'x' ) )
self.assertEqual( list(l), ['8', 'a', 'b', '6', '2', 'i', '4', '5', 'j'] )
l.reverse()
self.assertEqual( list(l), ['j', '5', '4', 'i', '2', '6', 'b', 'a', '8'] )
l.sort()
self.assertEqual( list(l), ['2', '4', '5', '6', '8', 'a', 'b', 'i', 'j'] )
if sys.hexversion >= 0x3000000:
l.sort( key=TObjString.GetName )
l.reverse()
else:
l.sort( lambda a, b: cmp(b.GetName(),a.GetName()) )
self.assertEqual( list(l), ['j', 'i', 'b', 'a', '8', '6', '5', '4', '2'] )
l2 = l[:3]
self.assertEqual( list(l2 * 3), ['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'] )
self.assertEqual( list(3 * l2), ['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'] )
l2 *= 3
self.assertEqual( list(l2), ['j', 'i', 'b', 'j', 'i', 'b', 'j', 'i', 'b'] )
l2 = l[:3]
l3 = l[6:8]
self.assertEqual( list(l2+l3), ['j', 'i', 'b', '5', '4'] )
i = iter(l2)
self.assertEqual( i.next(), 'j' )
self.assertEqual( i.next(), 'i' )
self.assertEqual( i.next(), 'b' )
self.assertRaises( StopIteration, i.next )
def divideEtaTH1Ds(etaHist,
numCat,
sourceFileName=None,
categoryList=None,
drawHist=False):
# etaHist - the TH1D to split into categories
# numCat - number of tagging categories
# categoryList - list of tagging category names
# drawHist - whether or not to display each category-split histogram
# sourceFileName - name of etaHist root file
#normalize etaHist
etaHist.Scale(1.0 / etaHist.Integral())
#create default category names if none are given
if categoryList == None:
categoryList = []
for i in range(numCat):
categoryList += ["Cat" + str(i)]
histSum = etaHist.Integral()
#get list of limits
limList = [-1]
for i in range(1, numCat):
start = limList[i - 1] + 1
targetVal = histSum / numCat
left = start
right = etaHist.GetNbinsX()
#print "\n\n\n",etaHist.Integral(start,start+1),"\n\n\n\n";
while abs(left - right) > 1:
if etaHist.Integral(start, int((left + right) / 2)) > targetVal:
right = (left + right) / 2
else:
left = (left + right) / 2
#print start, left, right, etaHist.Integral(start,int((left+right)/2)),targetVal,",",
if abs(etaHist.Integral(start, left) -
targetVal) > abs(etaHist.Integral(start, right) - targetVal):
limList += [right]
else:
limList += [left]
limList[0] = 0
limList += [etaHist.GetNbinsX()]
print limList
#rangeFit is a 4-element TList containing:
# - the sourceFileName as element 0
# - a RooThresholdCategory as element 2, and its RooRealVar as element 1
# - a tList of tFitResult as element 3
rangeFit = TList()
rangeFit.AddLast(TObjString(sourceFileName))
rangeFit.AddLast(RooRealVar('x', 'x', 0.0, 1.0))
rangeFit.AddLast(
RooThresholdCategory("tageffRegion", "region of tageff",
rangeFit.At(1), "Cat" + str(numCat)))
rangeFit.AddLast(TList())
#plot each category-split histogram, if necessary
if drawHist == True:
ROOT.gStyle.SetPalette(ROOT.kOcean)
#create stack to contain the category TH1Ds
etaHistStack = THStack("etaHistStack", "Stack of TH1Ds")
#create category-masking function for TH1D clones
histCutterFunc = TF1("histCutterFunc",
"((x>=[0])?((x<[1])?1.0:0.0):0.0)", 0.0, 1.0)
for i in range(len(limList) - 1):
etaHistClone = etaHist.Clone()
histCutterFunc.SetParameter(
0,
etaHist.GetXaxis().GetBinCenter(limList[i]))
histCutterFunc.SetParameter(
1,
etaHist.GetXaxis().GetBinCenter(limList[i + 1]))
#histCutterFunc.Draw();
#raw_input("Press Enter to continue to next hisCutterFunc");
etaHistClone.Multiply(histCutterFunc)
etaHistClone.SetFillColor(38 + i)
etaHistStack.Add(etaHistClone)
etaHistClone = etaHist.Clone()
etaHistClone.SetFillColor(38 + len(limList))
#etaHistStack.Add(etaHistClone);
import time
os.chdir(os.environ['B2DXFITTERSROOT'] + '/tutorial')
if (not (os.path.isdir('fits'))):
os.mkdir('fits')
os.chdir('fits')
histCanvas = TCanvas()
etaHistStack.Draw("hist PFC")
#etaHistClone.Draw("hist PFC");
#histCanvas.SaveAs('tagRegionFitList_%f.pdf' % time.time());
#create thresholds and fitting functions (all linear, but with different ranges corresponding to the categories)
currentRangeTF1List = TList()
for i in range(1, numCat + 1):
if (i <= numCat):
rangeFit.At(2).addThreshold(
etaHist.GetXaxis().GetBinCenter(limList[i]),
categoryList[i - 1])
currentRangeTF1List.AddLast(
TF1(
"fitFuncEtaset", "[0]+[1]*(x-" + str(
etaHist.Integral(limList[i - 1], limList[i]) /
(limList[i] - limList[i - 1])) + ")",
etaHist.GetXaxis().GetBinCenter(limList[i - 1]),
etaHist.GetXaxis().GetBinCenter(limList[i])))
#currentRangeTF1 = TF1("fitFuncEtaset","[0]+[1]*x",etaHist.GetXaxis().GetBinCenter(limList[i-1]),etaHist.GetXaxis().GetBinCenter(limList[i]));
rangeFit.Last().AddLast(
etaHist.Fit(currentRangeTF1List.Last(), "R0S").Get().Clone())
if (drawHist == True):
currentRangeTF1List.Last().DrawCopy('same')
#raw_input('Press Enter to continue to next fit function');
#currentRangeTF1.IsA().Destructor(currentRangeTF1);
#print "P0, P1 = ",rangeFit.Last().Last().Parameter(0), rangeFit.Last().Last().Parameter(1);
histCanvas.SaveAs('tagRegionFitList_%f.pdf' % time.time())
currentRangeTF1List.Delete()
#for i in range(1,numCat+1):
#currentRangeTF1List.Last().IsA().Destructor(currentRangeTF1List.Last());
#s = raw_input("Press Enter to continue...");
return rangeFit