def testGetSBMLFromAntimony(self):
try:
sandbox = TelluriumSandbox()
sandbox.run("getSBMLFromAntimony", ANTIMONY_STG)
self.assertEqual(sandbox.return_code, 0)
except exceptions.MissingTelluriumError:
pass
def testRun(self):
try:
sandbox = TelluriumSandbox()
sandbox.run("echo", INPUT)
self.assertEqual(sandbox.return_code, 0)
self.assertEqual(sandbox.output, INPUT)
except exceptions.MissingTelluriumError:
pass
def getXMLFromAntimony(antimony_stg):
"""
Constructs an SBML model from the antimony string.
:param str antimony_stg:
:return str: SBML model in xml format
"""
sandbox = TelluriumSandbox()
sandbox.run("getSBMLFromAntimony", antimony_stg)
if sandbox.return_code != 0:
raise ValueError("Bad antimony string: %s" % antimony_stg)
return sandbox.output
def testConstructorMissingPakcage(self):
with self.assertRaises(exceptions.MissingTelluriumError):
sandbox = TelluriumSandbox(dependencies=["dummy"])
def testGetSBMLFromAntimony(self):
sandbox = TelluriumSandbox()
sandbox.run("getSBMLFromAntimony", ANTIMONY_STG)
self.assertEqual(sandbox.return_code, 0)
def testRun(self):
sandbox = TelluriumSandbox()
sandbox.run("echo", INPUT)
self.assertEqual(sandbox.return_code, 0)
self.assertEqual(sandbox.output, INPUT)