class ZVISelectFrame(wx.Frame):
"""class extending wx.Frame for highest level handling of GUI components """
ID_RELATIVEMOTION = wx.NewId()
ID_EDIT_CAMERA_SETTINGS = wx.NewId()
ID_EDIT_SMARTSEM_SETTINGS = wx.NewId()
ID_SORTPOINTS = wx.NewId()
ID_SHOWNUMBERS = wx.NewId()
ID_SAVETRANSFORM = wx.NewId()
ID_EDITTRANSFORM = wx.NewId()
ID_FLIPVERT = wx.NewId()
ID_FULLRES = wx.NewId()
ID_SAVE_SETTINGS = wx.NewId()
def __init__(self, parent, title):
"""default init function for a wx.Frame
keywords:
parent)parent window to associate it with
title) title of the
"""
#default metadata info and image file, remove for release
#default_meta=""
#default_image=""
#recursively call old init function
wx.Frame.__init__(self, parent, title=title, size=(1400,885),pos=(5,5))
self.cfg = wx.Config('settings')
#setup menu
menubar = wx.MenuBar()
options = wx.Menu()
transformMenu = wx.Menu()
SmartSEM_Menu = wx.Menu()
#setup the menu options
self.relative_motion = options.Append(self.ID_RELATIVEMOTION, 'Relative motion?', 'Move points in the ribbon relative to the apparent curvature, else in absolution coordinates',kind=wx.ITEM_CHECK)
self.sort_points = options.Append(self.ID_SORTPOINTS,'Sort positions?','Should the program automatically sort the positions by their X coordinate from right to left?',kind=wx.ITEM_CHECK)
self.show_numbers = options.Append(self.ID_SHOWNUMBERS,'Show numbers?','Display a number next to each position to show the ordering',kind=wx.ITEM_CHECK)
self.flipvert = options.Append(self.ID_FLIPVERT,'Flip Image Vertically?','Display the image flipped vertically relative to the way it was meant to be displayed',kind=wx.ITEM_CHECK)
self.fullResOpt = options.Append(self.ID_FULLRES,'Load full resolution (speed vs memory)','Rather than loading a 10x downsampled ',kind=wx.ITEM_CHECK)
self.saveSettings = options.Append(self.ID_SAVE_SETTINGS,'Save Settings','Saves current configuration settings to config file that will be loaded automatically',kind=wx.ITEM_NORMAL)
options.Check(self.ID_RELATIVEMOTION,self.cfg.ReadBool('relativemotion',True))
options.Check(self.ID_SORTPOINTS,True)
options.Check(self.ID_SHOWNUMBERS,False)
options.Check(self.ID_FLIPVERT,self.cfg.ReadBool('flipvert',False))
options.Check(self.ID_FULLRES,self.cfg.ReadBool('fullres',False))
self.edit_transform = options.Append(self.ID_EDIT_CAMERA_SETTINGS,'Edit Camera Properties...','Edit the size of the camera chip and the pixel size',kind=wx.ITEM_NORMAL)
self.Bind(wx.EVT_MENU, self.SaveSettings, id=self.ID_SAVE_SETTINGS)
self.Bind(wx.EVT_MENU, self.ToggleRelativeMotion, id=self.ID_RELATIVEMOTION)
self.Bind(wx.EVT_MENU, self.ToggleSortOption, id=self.ID_SORTPOINTS)
self.Bind(wx.EVT_MENU, self.ToggleShowNumbers,id=self.ID_SHOWNUMBERS)
self.Bind(wx.EVT_MENU, self.EditCameraSettings, id=self.ID_EDIT_CAMERA_SETTINGS)
self.save_transformed = transformMenu.Append(self.ID_SAVETRANSFORM,'Save Transformed?',\
'Rather than save the coordinates in the original space, save a transformed set of coordinates according to transform configured in set_transform...',kind=wx.ITEM_CHECK)
transformMenu.Check(self.ID_SAVETRANSFORM,self.cfg.ReadBool('savetransform',False))
self.edit_camera_settings = transformMenu.Append(self.ID_EDITTRANSFORM,'Edit Transform...',\
'Edit the transform used to save transformed coordinates, by setting corresponding points and fitting a model',kind=wx.ITEM_NORMAL)
self.Bind(wx.EVT_MENU, self.EditTransform, id=self.ID_EDITTRANSFORM)
self.Transform = Transform()
self.Transform.load_settings(self.cfg)
self.edit_smartsem_settings = SmartSEM_Menu.Append(self.ID_EDIT_SMARTSEM_SETTINGS,'Edit SmartSEMSettings',\
'Edit the settings used to set the magnification, rotation,tilt, Z position, and working distance of SEM software in position list',kind=wx.ITEM_NORMAL)
self.Bind(wx.EVT_MENU, self.EditSmartSEMSettings, id=self.ID_EDIT_SMARTSEM_SETTINGS)
menubar.Append(options, '&Options')
menubar.Append(transformMenu,'&Transform')
menubar.Append(SmartSEM_Menu,'&Platform Options')
self.SetMenuBar(menubar)
#setup a mosaic panel
self.mosaicCanvas=MosaicPanel(self,config=self.cfg)
#setup a file picker for the metadata selector
#self.meta_label=wx.StaticText(self,id=wx.ID_ANY,label="metadata file")
#self.meta_filepicker=wx.FilePickerCtrl(self,message='Select a metadata file',\
#path="",name='metadataFilePickerCtrl1',\
#style=wx.FLP_USE_TEXTCTRL, size=wx.Size(300,20),wildcard='*.*')
#self.meta_filepicker.SetPath(self.cfg.Read('default_metadatapath',""))
#self.meta_formatBox=wx.ComboBox(self,id=wx.ID_ANY,value='ZeissXML',\
#size=wx.DefaultSize,choices=['ZVI','ZeissXML','SimpleCSV','ZeissCZI'], name='File Format For Meta Data')
#self.meta_formatBox.SetEditable(False)
#self.meta_load_button=wx.Button(self,id=wx.ID_ANY,label="Load",name="metadata load")
#self.meta_enter_button=wx.Button(self,id=wx.ID_ANY,label="Edit",name="manual meta")
#define the image file picker components
self.imgCollectLabel=wx.StaticText(self,id=wx.ID_ANY,label="image collection directory")
self.imgCollectDirPicker=wx.DirPickerCtrl(self,message='Select a directory to store images',\
path="",name='imgCollectPickerCtrl1',\
style=wx.FLP_USE_TEXTCTRL, size=wx.Size(300,20))
self.imgCollectDirPicker.SetPath(self.cfg.Read('default_imagepath',""))
self.imgCollect_load_button=wx.Button(self,id=wx.ID_ANY,label="Load",name="imgCollect load")
#wire up the button to the "OnLoad" button
self.Bind(wx.EVT_BUTTON, self.OnImageCollectLoad,self.imgCollect_load_button)
#self.Bind(wx.EVT_BUTTON, self.OnMetaLoad,self.meta_load_button)
#self.Bind(wx.EVT_BUTTON, self.OnEditImageMetadata,self.meta_enter_button)
#define the array picker components
self.array_label=wx.StaticText(self,id=wx.ID_ANY,label="array file")
self.array_filepicker=wx.FilePickerCtrl(self,message='Select an array file',\
path="",name='arrayFilePickerCtrl1',\
style=wx.FLP_USE_TEXTCTRL, size=wx.Size(300,20),wildcard='*.*')
self.array_filepicker.SetPath(self.cfg.Read('default_arraypath',""))
self.array_load_button=wx.Button(self,id=wx.ID_ANY,label="Load",name="load button")
self.array_formatBox=wx.ComboBox(self,id=wx.ID_ANY,value='AxioVision',\
size=wx.DefaultSize,choices=['uManager','AxioVision','SmartSEM','OMX','ZEN'], name='File Format For Position List')
self.array_formatBox.SetEditable(False)
self.array_save_button=wx.Button(self,id=wx.ID_ANY,label="Save",name="save button")
self.array_saveframes_button=wx.Button(self,id=wx.ID_ANY,label="Save Frames",name="save-frames button")
#wire up the button to the "OnLoad" button
self.Bind(wx.EVT_BUTTON, self.OnArrayLoad,self.array_load_button)
self.Bind(wx.EVT_BUTTON, self.OnArraySave,self.array_save_button)
self.Bind(wx.EVT_BUTTON, self.OnArraySaveFrames,self.array_saveframes_button)
#define a horizontal sizer for them and place the file picker components in there
#self.meta_filepickersizer=wx.BoxSizer(wx.HORIZONTAL)
#self.meta_filepickersizer.Add(self.meta_label,0,wx.EXPAND)
#self.meta_filepickersizer.Add(self.meta_filepicker,1,wx.EXPAND)
#self.meta_filepickersizer.Add(wx.StaticText(self,id=wx.ID_ANY,label="Metadata Format:"))
#self.meta_filepickersizer.Add(self.meta_formatBox,0,wx.EXPAND)
#self.meta_filepickersizer.Add(self.meta_load_button,0,wx.EXPAND)
#self.meta_filepickersizer.Add(self.meta_enter_button,0,wx.EXPAND)
#define a horizontal sizer for them and place the file picker components in there
self.imgCollect_filepickersizer=wx.BoxSizer(wx.HORIZONTAL)
self.imgCollect_filepickersizer.Add(self.imgCollectLabel,0,wx.EXPAND)
self.imgCollect_filepickersizer.Add(self.imgCollectDirPicker,1,wx.EXPAND)
self.imgCollect_filepickersizer.Add(self.imgCollect_load_button,0,wx.EXPAND)
#define a horizontal sizer for them and place the file picker components in there
self.array_filepickersizer=wx.BoxSizer(wx.HORIZONTAL)
self.array_filepickersizer.Add(self.array_label,0,wx.EXPAND)
self.array_filepickersizer.Add(self.array_filepicker,1,wx.EXPAND)
self.array_filepickersizer.Add(wx.StaticText(self,id=wx.ID_ANY,label="Format:"))
self.array_filepickersizer.Add(self.array_formatBox,0,wx.EXPAND)
self.array_filepickersizer.Add(self.array_load_button,0,wx.EXPAND)
self.array_filepickersizer.Add(self.array_save_button,0,wx.EXPAND)
self.array_filepickersizer.Add(self.array_saveframes_button,0,wx.EXPAND)
#define the overall vertical sizer for the frame
self.sizer = wx.BoxSizer(wx.VERTICAL)
#place the filepickersizer into the vertical arrangement
self.sizer.Add(self.imgCollect_filepickersizer,0,wx.EXPAND)
#self.sizer.Add(self.meta_filepickersizer,0,wx.EXPAND)
self.sizer.Add(self.array_filepickersizer,0,wx.EXPAND)
self.sizer.Add(self.mosaicCanvas.get_toolbar(), 0, wx.LEFT | wx.EXPAND)
self.sizer.Add(self.mosaicCanvas, 0, wx.EXPAND)
#self.poslist_set=False
#set the overall sizer and autofit everything
self.SetSizer(self.sizer)
self.SetAutoLayout(1)
self.Bind(wx.EVT_CHAR_HOOK, self.OnKeyPress)
#self.sizer.Fit(self)
self.Show(True)
self.SmartSEMSettings=SmartSEMSettings()
#self.OnImageLoad()
#self.OnArrayLoad()
#self.mosaicCanvas.draw()
def SaveSettings(self,event="none"):
#save the transform parameters
self.Transform.save_settings(self.cfg)
#save the menu options
self.cfg.WriteBool('relativemotion',self.relative_motion.IsChecked())
#self.cfg.WriteBool('flipvert',self.flipvert.IsChecked())
#self.cfg.WriteBool('fullres',self.fullResOpt.IsChecked())
self.cfg.WriteBool('savetransform',self.save_transformed.IsChecked())
#save the camera settings
#self.mosaicCanvas.posList.camera_settings.save_settings(self.cfg)
#save the mosaic options
self.mosaicCanvas.posList.mosaic_settings.save_settings(self.cfg)
#save the SEMSettings
self.SmartSEMSettings.save_settings(self.cfg)
self.cfg.Write('default_imagepath',self.imgCollectDirPicker.GetPath())
#self.cfg.Write('default_metadatapath',self.meta_filepicker.GetPath())
self.cfg.Write('default_arraypath',self.array_filepicker.GetPath())
def OnKeyPress(self,event="none"):
"""forward the key press event to the mosaicCanvas handler"""
mpos=wx.GetMousePosition()
mcrect=self.mosaicCanvas.GetScreenRect()
if mcrect.Contains(mpos):
self.mosaicCanvas.OnKeyPress(event)
else:
event.Skip()
def OnArrayLoad(self,event="none"):
"""event handler for the array load button"""
if self.array_formatBox.GetValue()=='AxioVision':
self.mosaicCanvas.posList.add_from_file(self.array_filepicker.GetPath())
elif self.array_formatBox.GetValue()=='OMX':
print "not yet implemented"
elif self.array_formatBox.GetValue()=='SmartSEM':
SEMsetting=self.mosaicCanvas.posList.add_from_file_SmartSEM(self.array_filepicker.GetPath())
self.SmartSEMSettings=SEMsetting
elif self.array_formatBox.GetValue()=='ZEN':
self.mosaicCanvas.posList.add_from_file_ZEN(self.array_filepicker.GetPath())
self.mosaicCanvas.draw()
def OnArraySave(self,event):
"""event handler for the array save button"""
if self.array_formatBox.GetValue()=='AxioVision':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_position_list(self.array_filepicker.GetPath(),trans=self.Transform)
else:
self.mosaicCanvas.posList.save_position_list(self.array_filepicker.GetPath())
elif self.array_formatBox.GetValue()=='OMX':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_position_list_OMX(self.array_filepicker.GetPath(),trans=self.Transform);
else:
self.mosaicCanvas.posList.save_position_list_OMX(self.array_filepicker.GetPath(),trans=None);
elif self.array_formatBox.GetValue()=='SmartSEM':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_position_list_SmartSEM(self.array_filepicker.GetPath(),SEMS=self.SmartSEMSettings,trans=self.Transform)
else:
self.mosaicCanvas.posList.save_position_list_SmartSEM(self.array_filepicker.GetPath(),SEMS=self.SmartSEMSettings,trans=None)
elif self.array_formatBox.GetValue()=='ZEN':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_position_list_ZENczsh(self.array_filepicker.GetPath(),trans=self.Transform,planePoints=self.planePoints)
else:
self.mosaicCanvas.posList.save_position_list_ZENczsh(self.array_filepicker.GetPath(),trans=None,planePoints=self.planePoints)
elif self.array_formatBox.GetValue()=='uManager':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_position_list_uM(self.array_filepicker.GetPath(),trans=self.Transform)
else:
self.mosaicCanvas.posList.save_position_list_uM(self.array_filepicker.GetPath(),trans=None)
def OnImageCollectLoad(self,event):
path=self.imgCollectDirPicker.GetPath()
self.mosaicCanvas.OnLoad(path)
def OnArraySaveFrames(self,event):
if self.array_formatBox.GetValue()=='AxioVision':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_frame_list(self.array_filepicker.GetPath(),trans=self.Transform)
else:
self.mosaicCanvas.posList.save_frame_list(self.array_filepicker.GetPath())
elif self.array_formatBox.GetValue()=='OMX':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_frame_list_OMX(self.array_filepicker.GetPath(),trans=self.Transform);
else:
self.mosaicCanvas.posList.save_frame_list_OMX(self.array_filepicker.GetPath(),trans=None);
elif self.array_formatBox.GetValue()=='SmartSEM':
if self.save_transformed.IsChecked():
self.mosaicCanvas.posList.save_frame_list_SmartSEM(self.array_filepicker.GetPath(),SEMS=self.SmartSEMSettings,trans=self.Transform)
else:
self.mosaicCanvas.posList.save_frame_list_SmartSEM(self.array_filepicker.GetPath(),SEMS=self.SmartSEMSettings,trans=None)
def ToggleRelativeMotion(self,event):
"""event handler for handling the toggling of the relative motion"""
if self.relative_motion.IsChecked():
self.mosaicCanvas.relative_motion=(True)
else:
self.mosaicCanvas.relative_motion=(False)
def ToggleSortOption(self,event):
"""event handler for handling the toggling of the relative motion"""
if self.sort_points.IsChecked():
self.mosaicCanvas.posList.dosort=(True)
else:
self.mosaicCanvas.posList.dosort=(False)
def ToggleShowNumbers(self,event):
if self.show_numbers.IsChecked():
self.mosaicCanvas.posList.setNumberVisibility(True)
else:
self.mosaicCanvas.posList.setNumberVisibility(False)
self.mosaicCanvas.draw()
def EditCameraSettings(self,event):
"""event handler for clicking the camera setting menu button"""
dlg = ChangeCameraSettings(None, -1,
title="Camera Settings",
settings=self.mosaicCanvas.camera_settings)
dlg.ShowModal()
del self.posList.camera_settings
#passes the settings to the position list
self.mosaicCanvas.posList.set_camera_settings(dlg.GetSettings())
dlg.Destroy()
def EditSmartSEMSettings(self,event):
dlg = ChangeSEMSettings(None, -1,
title="Smart SEM Settings",
settings=self.SmartSEMSettings)
dlg.ShowModal()
del self.SmartSEMSettings
#passes the settings to the position list
self.SmartSEMSettings=dlg.GetSettings()
dlg.Destroy()
def EditTransform(self,event):
"""event handler for clicking the edit transform menu button"""
dlg = ChangeTransform(None, -1,title="Adjust Transform")
dlg.ShowModal()
#passes the settings to the position list
#(pts_from,pts_to,transformType,flipVert,flipHoriz)=dlg.GetTransformInfo()
#print transformType
self.Transform=dlg.getTransform()
#for index,pt in enumerate(pts_from):
# (xp,yp)=self.Transform.transform(pt.x,pt.y)
# print("%5.5f,%5.5f -> %5.5f,%5.5f (%5.5f, %5.5f)"%(pt.x,pt.y,xp,yp,pts_to[index].x,pts_to[index].y))
dlg.Destroy()
