def makeReport(self, fileName):
myReport = Report('oneitem')
myReport.addStep('stageOut1')
myReport.addOutputModule('module1')
myReport.addOutputModule('module2')
myReport.addOutputFile('module1', {'lfn': 'FILE1', 'size': 1, 'events': 1})
myReport.addOutputFile('module2', {'lfn': 'FILE2', 'size': 1, 'events': 1})
myReport.addOutputFile('module2', {'lfn': 'FILE3', 'size': 1, 'events': 1})
myReport.persist(fileName)
def makeReport(self, fileName):
myReport = Report('oneitem')
myReport.addStep('stageOut1')
mod1 = myReport.addOutputModule('module1')
mod2 = myReport.addOutputModule('module2')
file1 = myReport.addOutputFile('module1', {'lfn': 'FILE1', 'size' : 1, 'events' : 1})
file2 = myReport.addOutputFile('module2', {'lfn': 'FILE2', 'size' : 1, 'events' : 1})
file3 = myReport.addOutputFile('module2', {'lfn': 'FILE3', 'size' : 1, 'events' : 1})
myReport.persist( fileName )
def execute(self, emulator = None):
"""
_execute_
"""
#Are we using emulators again?
if emulator != None:
return emulator.emulate(self.step, self.job)
# Search through steps for analysis files
for step in self.stepSpace.taskSpace.stepSpaces():
if step == self.stepName:
#Don't try to parse your own report; it's not there yet
continue
stepLocation = os.path.join(self.stepSpace.taskSpace.location, step)
logging.info("Beginning report processing for step %s" % step)
reportLocation = os.path.join(stepLocation, 'Report.pkl')
if not os.path.isfile(reportLocation):
logging.error("Cannot find report for step %s in space %s" \
% (step, stepLocation))
continue
# First, get everything from a file and 'unpersist' it
stepReport = Report()
stepReport.unpersist(reportLocation, step)
# Don't upload nor stage out files from bad steps.
if not stepReport.stepSuccessful(step):
continue
# Pulling out the analysis files from each step
analysisFiles = stepReport.getAnalysisFilesFromStep(step)
# make sure all conditions from this job get the same uuid
uuid = makeUUID()
files2copy = []
# Working on analysis files
for analysisFile in analysisFiles:
# only deal with sqlite files
if analysisFile.FileClass == "ALCA":
sqlitefile = analysisFile.fileName.replace('sqlite_file:', '', 1)
filenamePrefix = "Run%d@%s@%s" % (self.step.condition.runNumber,
analysisFile.tag, uuid)
filenameDB = filenamePrefix + ".db"
filenameTXT = filenamePrefix + ".txt"
shutil.copy2(os.path.join(stepLocation, sqlitefile), filenameDB)
textoutput = "destDB %s\n" % analysisFile.destDB
textoutput += "destDBValidation %s\n" % analysisFile.destDBValidation
textoutput += "tag %s\n" % analysisFile.tag
textoutput += "inputtag %s\n" % analysisFile.inputtag
textoutput += "since\n"
textoutput += "Timetype %s\n" % analysisFile.Timetype
textoutput += "IOVCheck %s\n" % getattr(analysisFile, 'IOVCheck', "offline")
textoutput += "DuplicateTagHLT %s\n" % getattr(analysisFile, 'DuplicateTagHLT', "")
textoutput += "DuplicateTagEXPRESS %s\n" % getattr(analysisFile, 'DuplicateTagEXPRESS', "")
textoutput += "DuplicateTagPROMPT %s\n" % analysisFile.DuplicateTagPROMPT
textoutput += "Source %s\n" % getattr(analysisFile, 'Source', "")
textoutput += "Fileclass ALCA\n"
fout = open(filenameTXT, "w")
fout.write(textoutput)
fout.close()
os.chmod(filenameDB, stat.S_IREAD | stat.S_IWRITE | stat.S_IRUSR | stat.S_IWUSR | stat.S_IRGRP | stat.S_IWGRP | stat.S_IROTH | stat.S_IWOTH)
os.chmod(filenameTXT, stat.S_IREAD | stat.S_IWRITE | stat.S_IRUSR | stat.S_IWUSR | stat.S_IRGRP | stat.S_IWGRP | stat.S_IROTH | stat.S_IWOTH)
files2copy.append(filenameDB)
files2copy.append(filenameTXT)
# check and create target directory
if not os.path.isdir(self.step.condition.dir):
msg = 'Conditions copy failed with response:\n'
msg += 'The target dir %s does not exist or is not a directory\n'
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure", msg)
# copy files out and fake the job report
logging.info("Copy out conditions files to %s" % self.step.condition.dir)
for file2copy in files2copy:
logging.info("==> copy %s" % file2copy)
targetFile = os.path.join(self.step.condition.dir, file2copy)
try:
shutil.copy2(file2copy, targetFile)
except Exception, ex:
msg = 'Conditions copy failed with response:\n'
msg += 'Error: %s\n' % str(ex)
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure", msg)
# add fake output file to job report
stepReport.addOutputFile(self.step.condition.outLabel,
file = { 'lfn' : targetFile,
'pfn' : targetFile,
'module_label' : self.step.condition.outLabel })
if len(files2copy) == 0:
# no output from AlcaHarvest is a valid result, can
# happen if calibration algorithms produced no output
# due to not enough statistics or other reasons
#
# add fake placeholder output file to job report
logging.info("==> no sqlite files from AlcaHarvest job, creating placeholder file record")
stepReport.addOutputFile(self.step.condition.outLabel,
file = { 'lfn' : "/no/output",
'pfn' : "/no/output",
'module_label' : self.step.condition.outLabel })
# Am DONE with report
# Persist it
stepReport.persist(reportLocation)
def execute(self, emulator = None):
"""
_execute_
"""
#Are we using emulators again?
if emulator != None:
return emulator.emulate(self.step, self.job)
# Search through steps for analysis files
for step in self.stepSpace.taskSpace.stepSpaces():
if step == self.stepName:
#Don't try to parse your own report; it's not there yet
continue
stepLocation = os.path.join(self.stepSpace.taskSpace.location, step)
logging.info("Beginning report processing for step %s" % step)
reportLocation = os.path.join(stepLocation, 'Report.pkl')
if not os.path.isfile(reportLocation):
logging.error("Cannot find report for step %s in space %s" \
% (step, stepLocation))
continue
# First, get everything from a file and 'unpersist' it
stepReport = Report()
stepReport.unpersist(reportLocation, step)
# Don't upload nor stage out files from bad steps.
if not stepReport.stepSuccessful(step):
continue
# Pulling out the analysis files from each step
analysisFiles = stepReport.getAnalysisFilesFromStep(step)
# make sure all conditions from this job get the same uuid
uuid = makeUUID()
files2copy = []
# Working on analysis files
for analysisFile in analysisFiles:
# only deal with sqlite files
if analysisFile.FileClass == "ALCA":
sqlitefile = analysisFile.fileName.replace('sqlite_file:', '', 1)
filenamePrefix = "Run%d@%s@%s" % (self.step.condition.runNumber,
analysisFile.inputtag, uuid)
filenameDB = filenamePrefix + ".db"
filenameTXT = filenamePrefix + ".txt"
shutil.copy2(os.path.join(stepLocation, sqlitefile), filenameDB)
textoutput = "prepMetaData %s\n" % analysisFile.prepMetaData
textoutput += "prodMetaData %s\n" % analysisFile.prodMetaData
fout = open(filenameTXT, "w")
fout.write(textoutput)
fout.close()
os.chmod(filenameDB, stat.S_IREAD | stat.S_IWRITE | stat.S_IRUSR | stat.S_IWUSR | stat.S_IRGRP | stat.S_IWGRP | stat.S_IROTH | stat.S_IWOTH)
os.chmod(filenameTXT, stat.S_IREAD | stat.S_IWRITE | stat.S_IRUSR | stat.S_IWUSR | stat.S_IRGRP | stat.S_IWGRP | stat.S_IROTH | stat.S_IWOTH)
files2copy.append(filenameDB)
files2copy.append(filenameTXT)
# copy files out and fake the job report
logging.info("Copy out conditions files to %s" % self.step.condition.dir)
for file2copy in files2copy:
logging.info("==> copy %s" % file2copy)
targetLFN = os.path.join(self.step.condition.dir, file2copy)
targetPFN = "root://eoscms//eos/cms%s" % targetLFN
command = "xrdcp -s -f %s %s" % (file2copy, targetPFN)
p = subprocess.Popen(command, shell = True,
stdout=subprocess.PIPE,
stderr=subprocess.STDOUT)
output = p.communicate()[0]
if p.returncode > 0:
msg = 'Failure during copy to EOS:\n'
msg += ' %s\n' % output
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure", msg)
# add fake output file to job report
stepReport.addOutputFile(self.step.condition.outLabel,
file = { 'lfn' : targetLFN,
'pfn' : targetPFN,
'module_label' : self.step.condition.outLabel })
if len(files2copy) == 0:
# no output from AlcaHarvest is a valid result, can
# happen if calibration algorithms produced no output
# due to not enough statistics or other reasons
#
# add fake placeholder output file to job report
logging.info("==> no sqlite files from AlcaHarvest job, creating placeholder file record")
stepReport.addOutputFile(self.step.condition.outLabel,
file = { 'lfn' : "/no/output",
'pfn' : "/no/output",
'module_label' : self.step.condition.outLabel })
# Am DONE with report
# Persist it
stepReport.persist(reportLocation)
return
def execute(self, emulator=None):
"""
_execute_
"""
# Are we using emulators again?
if emulator != None:
return emulator.emulate(self.step, self.job)
logging.info("Steps.Executors.%s.execute called",
self.__class__.__name__)
# Search through steps for analysis files
for step in self.stepSpace.taskSpace.stepSpaces():
if step == self.stepName:
# Don't try to parse your own report; it's not there yet
continue
stepLocation = os.path.join(self.stepSpace.taskSpace.location,
step)
logging.info("Beginning report processing for step %s", step)
reportLocation = os.path.join(stepLocation, 'Report.pkl')
if not os.path.isfile(reportLocation):
logging.error("Cannot find report for step %s in space %s",
step, stepLocation)
continue
# First, get everything from a file and 'unpersist' it
stepReport = Report()
stepReport.unpersist(reportLocation, step)
# Don't upload nor stage out files from bad steps.
if not stepReport.stepSuccessful(step):
continue
# Pulling out the analysis files from each step
analysisFiles = stepReport.getAnalysisFilesFromStep(step)
# make sure all conditions from this job get the same uuid
uuid = makeUUID()
condFiles2copy = []
lumiFiles2copy = []
# Working on analysis files
for analysisFile in analysisFiles:
# deal with sqlite files
if analysisFile.FileClass == "ALCA":
sqlitefile = analysisFile.fileName.replace(
'sqlite_file:', '', 1)
filenamePrefix = "Run%d@%s@%s" % (
self.step.condition.runNumber, analysisFile.inputtag,
uuid)
filenameDB = filenamePrefix + ".db"
filenameTXT = filenamePrefix + ".txt"
shutil.copy2(os.path.join(stepLocation, sqlitefile),
filenameDB)
textoutput = "prepMetaData %s\n" % analysisFile.prepMetaData
textoutput += "prodMetaData %s\n" % analysisFile.prodMetaData
with open(filenameTXT, "w") as fout:
fout.write(textoutput)
os.chmod(
filenameDB, stat.S_IREAD | stat.S_IWRITE | stat.S_IRUSR
| stat.S_IWUSR | stat.S_IRGRP | stat.S_IWGRP
| stat.S_IROTH | stat.S_IWOTH)
os.chmod(
filenameTXT, stat.S_IREAD | stat.S_IWRITE
| stat.S_IRUSR | stat.S_IWUSR | stat.S_IRGRP
| stat.S_IWGRP | stat.S_IROTH | stat.S_IWOTH)
condFiles2copy.append(filenameDB)
condFiles2copy.append(filenameTXT)
# deal with text files containing lumi info
elif analysisFile.FileClass == "ALCATXT":
shutil.copy2(
os.path.join(stepLocation, analysisFile.fileName),
analysisFile.fileName)
lumiFiles2copy.append(analysisFile.fileName)
# copy conditions files out and fake the job report
addedOutputFJR = False
if self.step.condition.lfnbase:
logging.info("Copy out conditions files to %s",
self.step.condition.lfnbase)
for file2copy in condFiles2copy:
logging.info("==> copy %s", file2copy)
targetLFN = os.path.join(self.step.condition.lfnbase,
file2copy)
targetPFN = "root://eoscms//eos/cms%s" % targetLFN
command = "env XRD_WRITERECOVERY=0 xrdcp -s -f %s %s" % (
file2copy, targetPFN)
p = subprocess.Popen(command,
shell=True,
stdout=subprocess.PIPE,
stderr=subprocess.STDOUT)
output = p.communicate()[0]
if p.returncode > 0:
msg = 'Failure during condition copy to EOS:\n'
msg += ' %s\n' % output
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure",
msg)
# add fake output file to job report
addedOutputFJR = True
stepReport.addOutputFile(self.step.condition.outLabel,
aFile={
'lfn':
targetLFN,
'pfn':
targetPFN,
'module_label':
self.step.condition.outLabel
})
# copy luminosity files out
if self.step.luminosity.url:
logging.info("Copy out luminosity files to %s",
self.step.luminosity.url)
for file2copy in lumiFiles2copy:
logging.info("==> copy %s", file2copy)
targetPFN = rootUrlJoin(self.step.luminosity.url,
file2copy)
if not targetPFN:
msg = 'No valid URL for lumi copy:\n'
msg += ' %s\n' % self.step.luminosity.url
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure",
msg)
command = "env XRD_WRITERECOVERY=0 xrdcp -s -f %s %s" % (
file2copy, targetPFN)
p = subprocess.Popen(command,
shell=True,
stdout=subprocess.PIPE,
stderr=subprocess.STDOUT)
output = p.communicate()[0]
if p.returncode > 0:
msg = 'Failure during copy to EOS:\n'
msg += ' %s\n' % output
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure",
msg)
if not addedOutputFJR:
# no conditions from AlcaHarvest is a valid result, can
# happen if calibration algorithms produced no output
# due to not enough statistics or other reasons
#
# add fake placeholder output file to job report
logging.info(
"==> no sqlite files from AlcaHarvest job, creating placeholder file record"
)
stepReport.addOutputFile(self.step.condition.outLabel,
aFile={
'lfn':
"/no/output",
'pfn':
"/no/output",
'module_label':
self.step.condition.outLabel
})
# Am DONE with report
# Persist it
stepReport.persist(reportLocation)
return
def execute(self, emulator=None):
"""
_execute_
"""
#Are we using emulators again?
if emulator != None:
return emulator.emulate(self.step, self.job)
# Search through steps for analysis files
for step in self.stepSpace.taskSpace.stepSpaces():
if step == self.stepName:
#Don't try to parse your own report; it's not there yet
continue
stepLocation = os.path.join(self.stepSpace.taskSpace.location,
step)
logging.info("Beginning report processing for step %s" % step)
reportLocation = os.path.join(stepLocation, 'Report.pkl')
if not os.path.isfile(reportLocation):
logging.error("Cannot find report for step %s in space %s" \
% (step, stepLocation))
continue
# First, get everything from a file and 'unpersist' it
stepReport = Report()
stepReport.unpersist(reportLocation, step)
# Don't upload nor stage out files from bad steps.
if not stepReport.stepSuccessful(step):
continue
# Pulling out the analysis files from each step
analysisFiles = stepReport.getAnalysisFilesFromStep(step)
# make sure all conditions from this job get the same uuid
uuid = makeUUID()
files2copy = []
# Working on analysis files
for analysisFile in analysisFiles:
# only deal with sqlite files
if analysisFile.FileClass == "ALCA":
sqlitefile = analysisFile.fileName.replace(
'sqlite_file:', '', 1)
filenamePrefix = "Run%d@%s@%s" % (
self.step.condition.runNumber, analysisFile.inputtag,
uuid)
filenameDB = filenamePrefix + ".db"
filenameTXT = filenamePrefix + ".txt"
shutil.copy2(os.path.join(stepLocation, sqlitefile),
filenameDB)
textoutput = "prepMetaData %s\n" % analysisFile.prepMetaData
textoutput += "prodMetaData %s\n" % analysisFile.prodMetaData
fout = open(filenameTXT, "w")
fout.write(textoutput)
fout.close()
os.chmod(
filenameDB, stat.S_IREAD | stat.S_IWRITE | stat.S_IRUSR
| stat.S_IWUSR | stat.S_IRGRP | stat.S_IWGRP
| stat.S_IROTH | stat.S_IWOTH)
os.chmod(
filenameTXT, stat.S_IREAD | stat.S_IWRITE
| stat.S_IRUSR | stat.S_IWUSR | stat.S_IRGRP
| stat.S_IWGRP | stat.S_IROTH | stat.S_IWOTH)
files2copy.append(filenameDB)
files2copy.append(filenameTXT)
# check and create target directory
if not os.path.isdir(self.step.condition.dir):
msg = 'Conditions copy failed with response:\n'
msg += 'The target dir %s does not exist or is not a directory\n'
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure", msg)
# copy files out and fake the job report
logging.info("Copy out conditions files to %s" %
self.step.condition.dir)
for file2copy in files2copy:
logging.info("==> copy %s" % file2copy)
targetFile = os.path.join(self.step.condition.dir, file2copy)
try:
shutil.copy2(file2copy, targetFile)
except Exception, ex:
msg = 'Conditions copy failed with response:\n'
msg += 'Error: %s\n' % str(ex)
logging.error(msg)
raise WMExecutionFailure(60319, "AlcaHarvestFailure", msg)
# add fake output file to job report
stepReport.addOutputFile(self.step.condition.outLabel,
file={
'lfn':
targetFile,
'pfn':
targetFile,
'module_label':
self.step.condition.outLabel
})
if len(files2copy) == 0:
# no output from AlcaHarvest is a valid result, can
# happen if calibration algorithms produced no output
# due to not enough statistics or other reasons
#
# add fake placeholder output file to job report
logging.info(
"==> no sqlite files from AlcaHarvest job, creating placeholder file record"
)
stepReport.addOutputFile(self.step.condition.outLabel,
file={
'lfn':
"/no/output",
'pfn':
"/no/output",
'module_label':
self.step.condition.outLabel
})
# Am DONE with report
# Persist it
stepReport.persist(reportLocation)
