def create_processing_input_file(self, processing_input_filename):
"""Creates dozor input file base on data collection parameters
:param processing_input_filename
:type : str
"""
input_file = XSDataInputControlDozor()
input_file.setTemplate(XSDataString(self.params_dict["template"]))
input_file.setFirst_image_number(
XSDataInteger(self.params_dict["first_image_num"])
)
input_file.setLast_image_number(XSDataInteger(self.params_dict["images_num"]))
input_file.setFirst_run_number(XSDataInteger(self.params_dict["run_number"]))
input_file.setLast_run_number(XSDataInteger(self.params_dict["run_number"]))
input_file.setLine_number_of(XSDataInteger(self.params_dict["lines_num"]))
input_file.setReversing_rotation(
XSDataBoolean(self.params_dict["reversing_rotation"])
)
input_file.setPixelMin(XSDataInteger(self.detector_hwobj.get_pixel_min()))
input_file.setPixelMax(XSDataInteger(self.detector_hwobj.get_pixel_max()))
input_file.setBeamstopSize(XSDataDouble(self.beamstop_hwobj.get_size()))
input_file.setBeamstopDistance(XSDataDouble(self.beamstop_hwobj.get_distance()))
input_file.setBeamstopDirection(
XSDataString(self.beamstop_hwobj.get_direction())
)
input_file.exportToFile(processing_input_filename)
def create_processing_input_file(self, processing_input_filename):
"""Creates dozor input file base on data collection parameters
:param processing_input_filename
:type : str
"""
input_file = XSDataInputControlDozor()
input_file.setTemplate(XSDataString(self.params_dict["template"]))
input_file.setFirst_image_number(
XSDataInteger(self.params_dict["first_image_num"]))
input_file.setLast_image_number(
XSDataInteger(self.params_dict["images_num"]))
input_file.setFirst_run_number(
XSDataInteger(self.params_dict["run_number"]))
input_file.setLast_run_number(
XSDataInteger(self.params_dict["run_number"]))
input_file.setLine_number_of(
XSDataInteger(self.params_dict["lines_num"]))
input_file.setReversing_rotation(
XSDataBoolean(self.params_dict["reversing_rotation"]))
input_file.setPixelMin(
XSDataInteger(self.detector_hwobj.get_pixel_min()))
input_file.setPixelMax(
XSDataInteger(self.detector_hwobj.get_pixel_max()))
input_file.setBeamstopSize(XSDataDouble(
self.beamstop_hwobj.get_size()))
input_file.setBeamstopDistance(
XSDataDouble(self.beamstop_hwobj.get_distance()))
input_file.setBeamstopDirection(
XSDataString(self.beamstop_hwobj.get_direction()))
input_file.exportToFile(processing_input_filename)
def create_processing_input(self, data_collection):
"""Creates dozor input file base on data collection parameters
:param data_collection: data collection object
:type : queue_model_objects.DataCollection
"""
acquisition = data_collection.acquisitions[0]
acq_params = acquisition.acquisition_parameters
input_file = XSDataInputControlDozor()
image_file_template = "%s_%%d_%%05d.cbf" % (
acquisition.path_template.get_prefix())
template = os.path.join(acquisition.path_template.directory,
image_file_template)
first_image_num = acq_params.first_image
images_num = acq_params.num_images
last_image_num = first_image_num + images_num - 1
run_number = acquisition.path_template.run_number
lines_num = acq_params.num_lines
pixel_min = 0
pixel_max = 0
beamstop_size = 0
beamstop_distance = 0
beamstop_direction = 0
pixel_min = self.detector_hwobj.get_pixel_min()
pixel_max = self.detector_hwobj.get_pixel_max()
beamstop_size = self.beamstop_hwobj.get_size()
beamstop_distance = self.beamstop_hwobj.get_distance()
beamstop_direction = self.beamstop_hwobj.get_direction()
if data_collection.grid:
grid_params = data_collection.grid.get_properties()
reversing_rotation = grid_params["reversing_rotation"]
else:
reversing_rotation = False
self.params_dict["template"] = template
self.params_dict["first_image_num"] = first_image_num
self.params_dict["images_num"] = images_num
self.params_dict["lines_num"] = lines_num
self.params_dict["images_per_line"] = images_num / lines_num
self.params_dict["run_number"] = run_number
self.params_dict["pixel_min"] = pixel_min
self.params_dict["pixel_max"] = pixel_max
self.params_dict["beamstop_size"] = beamstop_size
self.params_dict["beamstop_distance"] = beamstop_distance
self.params_dict["beamstop_direction"] = beamstop_direction
self.params_dict["status"] = "Started"
self.params_dict["title"] = "%s_%d_#####.cbf (%d - %d)" % \
(acquisition.path_template.get_prefix(),
acquisition.path_template.run_number,
first_image_num,
last_image_num)
self.params_dict["comments"] = "Scan lines: %d, frames per line: %d" % \
(lines_num, images_num / lines_num)
if lines_num > 1:
self.params_dict["dx_mm"] = grid_params["dx_mm"]
self.params_dict["dy_mm"] = grid_params["dy_mm"]
self.params_dict["steps_x"] = grid_params["steps_x"]
self.params_dict["steps_y"] = grid_params["steps_y"]
self.params_dict["xOffset"] = grid_params["xOffset"]
self.params_dict["yOffset"] = grid_params["yOffset"]
else:
self.params_dict["steps_y"] = 1
input_file.setTemplate(XSDataString(template))
input_file.setFirst_image_number(XSDataInteger(first_image_num))
input_file.setLast_image_number(XSDataInteger(last_image_num))
input_file.setFirst_run_number(XSDataInteger(run_number))
input_file.setLast_run_number(XSDataInteger(run_number))
input_file.setLine_number_of(XSDataInteger(lines_num))
input_file.setReversing_rotation(XSDataBoolean(reversing_rotation))
input_file.setPixelMin(XSDataInteger(pixel_min))
input_file.setPixelMax(XSDataInteger(pixel_max))
input_file.setBeamstopSize(XSDataDouble(beamstop_size))
input_file.setBeamstopDistance(XSDataDouble(beamstop_distance))
input_file.setBeamstopDirection(XSDataString(beamstop_direction))
return input_file
def create_processing_input(self, data_collection):
"""Creates dozor input file base on data collection parameters
:param data_collection: data collection object
:type : queue_model_objects.DataCollection
"""
acquisition = data_collection.acquisitions[0]
acq_params = acquisition.acquisition_parameters
input_file = XSDataInputControlDozor()
image_file_template = "%s_%%d_%%05d.cbf" % (
acquisition.path_template.get_prefix())
template = os.path.join(acquisition.path_template.directory,
image_file_template)
first_image_num = acq_params.first_image
images_num = acq_params.num_images
last_image_num = first_image_num + images_num - 1
run_number = acquisition.path_template.run_number
lines_num = acq_params.num_lines
pixel_min = 0
pixel_max = 0
beamstop_size = 0
beamstop_distance = 0
beamstop_direction = 0
pixel_min = self.detector_hwobj.get_pixel_min()
pixel_max = self.detector_hwobj.get_pixel_max()
#?utilite du beamstop ???????????????
beamstop_size = self.beamstop_hwobj.get_size()
beamstop_distance = self.beamstop_hwobj.get_distance()
beamstop_direction = self.beamstop_hwobj.get_direction()
if data_collection.grid:
grid_params = data_collection.grid.get_properties()
reversing_rotation = grid_params["reversing_rotation"]
else:
reversing_rotation = False
self.params_dict["template"] = template
self.params_dict["first_image_num"] = first_image_num
self.params_dict["images_num"] = images_num
self.params_dict["lines_num"] = lines_num
self.params_dict["images_per_line"] = images_num / lines_num
self.params_dict["run_number"] = run_number
self.params_dict["pixel_min"] = pixel_min
self.params_dict["pixel_max"] = pixel_max
self.params_dict["beamstop_size"] = beamstop_size
self.params_dict["beamstop_distance"] = beamstop_distance
self.params_dict["beamstop_direction"] = beamstop_direction
self.params_dict["status"] = "Started"
self.params_dict["title"] = "%s_%d_#####.cbf (%d - %d)" % \
(acquisition.path_template.get_prefix(),
acquisition.path_template.run_number,
first_image_num,
last_image_num)
self.params_dict["comments"] = "Scan lines: %d, frames per line: %d" % \
(lines_num, images_num / lines_num)
if lines_num > 1:
self.params_dict["dx_mm"] = grid_params["dx_mm"]
self.params_dict["dy_mm"] = grid_params["dy_mm"]
self.params_dict["steps_x"] = grid_params["steps_x"]
self.params_dict["steps_y"] = grid_params["steps_y"]
self.params_dict["xOffset"] = grid_params["xOffset"]
self.params_dict["yOffset"] = grid_params["yOffset"]
else:
self.params_dict["steps_y"] = 1
input_file.setTemplate(XSDataString(template))
input_file.setFirst_image_number(XSDataInteger(first_image_num))
input_file.setLast_image_number(XSDataInteger(last_image_num))
input_file.setFirst_run_number(XSDataInteger(run_number))
input_file.setLast_run_number(XSDataInteger(run_number))
input_file.setLine_number_of(XSDataInteger(lines_num))
input_file.setReversing_rotation(XSDataBoolean(reversing_rotation))
input_file.setPixelMin(XSDataInteger(pixel_min))
input_file.setPixelMax(XSDataInteger(pixel_max))
input_file.setBeamstopSize(XSDataDouble(beamstop_size))
input_file.setBeamstopDistance(XSDataDouble(beamstop_distance))
input_file.setBeamstopDirection(XSDataString(beamstop_direction))
return input_file
def create_processing_input(self, data_collection, processing_params, grid_object):
"""
Descript. : Creates dozor input file base on data collection parameters
Args. : data_collection (object)
Return. : processing_input_file (object)
"""
acquisition = data_collection.acquisitions[0]
acq_params = acquisition.acquisition_parameters
processing_input_file = XSDataInputControlDozor()
_run = "_%d_" % acquisition.path_template.run_number
image_file_template = "%s_%%d_%%05d.cbf" % (acquisition.path_template.get_prefix())
template = os.path.join(acquisition.path_template.directory, image_file_template)
first_image_num = acq_params.first_image
images_num = acq_params.num_images
last_image_num = first_image_num + images_num - 1
run_number = acquisition.path_template.run_number
lines_num = acq_params.num_lines
grid_params = grid_object.get_properties()
pixel_min = self.detector_hwobj.get_pixel_min()
pixel_max = self.detector_hwobj.get_pixel_max()
beamstop_size = self.beamstop_hwobj.get_beamstop_size()
beamstop_distance = self.beamstop_hwobj.get_beamstop_distance()
beamstop_direction = self.beamstop_hwobj.get_beamstop_direction()
reversing_rotation = grid_params["reversing_rotation"]
processing_params["template"] = template
processing_params["first_image_num"] = first_image_num
processing_params["images_num"] = images_num
processing_params["lines_num"] = lines_num
processing_params["images_per_line"] = images_num / lines_num
processing_params["run_number"] = run_number
processing_params["pixel_min"] = pixel_min
processing_params["pixel_max"] = pixel_max
processing_params["beamstop_size"] = beamstop_size
processing_params["beamstop_distance"] = beamstop_distance
processing_params["beamstop_direction"] = beamstop_direction
processing_params["status"] = "Started"
processing_params["title"] = "%s_%d_xxxxx.cbf (%d - %d)" % (
acquisition.path_template.get_prefix(),
acquisition.path_template.run_number,
first_image_num,
last_image_num,
)
processing_params["comments"] = "Scan lines: %d, frames per line: %d" % (lines_num, images_num / lines_num)
if lines_num > 1:
processing_params["dx_mm"] = grid_params["dx_mm"]
processing_params["dy_mm"] = grid_params["dy_mm"]
processing_params["steps_x"] = grid_params["steps_x"]
processing_params["steps_y"] = grid_params["steps_y"]
processing_params["xOffset"] = grid_params["xOffset"]
processing_params["yOffset"] = grid_params["yOffset"]
processing_input_file.setTemplate(XSDataString(template))
processing_input_file.setFirst_image_number(XSDataInteger(first_image_num))
processing_input_file.setLast_image_number(XSDataInteger(last_image_num))
processing_input_file.setFirst_run_number(XSDataInteger(run_number))
processing_input_file.setLast_run_number(XSDataInteger(run_number))
processing_input_file.setLine_number_of(XSDataInteger(lines_num))
processing_input_file.setReversing_rotation(XSDataBoolean(reversing_rotation))
processing_input_file.setPixelMin(XSDataInteger(pixel_min)) # should be -1 for real data
processing_input_file.setPixelMax(XSDataInteger(pixel_max))
processing_input_file.setBeamstopSize(XSDataDouble(beamstop_size))
processing_input_file.setBeamstopDistance(XSDataDouble(beamstop_distance))
processing_input_file.setBeamstopDirection(XSDataString(beamstop_direction))
return processing_input_file, processing_params
def create_processing_input(self, data_collection, processing_params,
grid_object):
"""
Descript. : Creates dozor input file base on data collection parameters
Args. : data_collection (object)
Return. : processing_input_file (object)
"""
acquisition = data_collection.acquisitions[0]
acq_params = acquisition.acquisition_parameters
processing_input_file = XSDataInputControlDozor()
_run = "_%d_" % acquisition.path_template.run_number
image_file_template = "%s_%%d_%%05d.cbf" % (
acquisition.path_template.get_prefix())
template = os.path.join(acquisition.path_template.directory,
image_file_template)
first_image_num = acq_params.first_image
images_num = acq_params.num_images
last_image_num = first_image_num + images_num - 1
run_number = acquisition.path_template.run_number
lines_num = acq_params.num_lines
pixel_min = 0
pixel_max = 0
beamstop_size = 0
beamstop_distance = 0
beamstop_direction = 0
try:
pixel_min = self.detector_hwobj.get_pixel_min()
pixel_max = self.detector_hwobj.get_pixel_max()
except:
pass
try:
beamstop_size = self.beamstop_hwobj.get_beamstop_size()
beamstop_distance = self.beamstop_hwobj.get_beamstop_distance()
beamstop_direction = self.beamstop_hwobj.get_beamstop_direction()
except:
pass
grid_params = grid_object.get_properties()
reversing_rotation = grid_params["reversing_rotation"]
processing_params["template"] = template
processing_params["first_image_num"] = first_image_num
processing_params["images_num"] = images_num
processing_params["lines_num"] = lines_num
processing_params["images_per_line"] = images_num / lines_num
processing_params["run_number"] = run_number
processing_params["pixel_min"] = pixel_min
processing_params["pixel_max"] = pixel_max
processing_params["beamstop_size"] = beamstop_size
processing_params["beamstop_distance"] = beamstop_distance
processing_params["beamstop_direction"] = beamstop_direction
processing_params["status"] = "Started"
processing_params["title"] = "%s_%d_xxxxx.cbf (%d - %d)" % \
(acquisition.path_template.get_prefix(),
acquisition.path_template.run_number,
first_image_num,
last_image_num)
processing_params["comments"] = "Scan lines: %d, frames per line: %d" % \
(lines_num, images_num / lines_num )
if lines_num > 1:
processing_params["dx_mm"] = grid_params["dx_mm"]
processing_params["dy_mm"] = grid_params["dy_mm"]
processing_params["steps_x"] = grid_params["steps_x"]
processing_params["steps_y"] = grid_params["steps_y"]
processing_params["xOffset"] = grid_params["xOffset"]
processing_params["yOffset"] = grid_params["yOffset"]
processing_input_file.setTemplate(XSDataString(template))
processing_input_file.setFirst_image_number(
XSDataInteger(first_image_num))
processing_input_file.setLast_image_number(
XSDataInteger(last_image_num))
processing_input_file.setFirst_run_number(XSDataInteger(run_number))
processing_input_file.setLast_run_number(XSDataInteger(run_number))
processing_input_file.setLine_number_of(XSDataInteger(lines_num))
processing_input_file.setReversing_rotation(
XSDataBoolean(reversing_rotation))
processing_input_file.setPixelMin(
XSDataInteger(pixel_min)) # should be -1 for real data
processing_input_file.setPixelMax(XSDataInteger(pixel_max))
processing_input_file.setBeamstopSize(XSDataDouble(beamstop_size))
processing_input_file.setBeamstopDistance(
XSDataDouble(beamstop_distance))
processing_input_file.setBeamstopDirection(
XSDataString(beamstop_direction))
return processing_input_file, processing_params