def parseLabelitDistlOutput(self, _strLabelitDistlLogText):
     EDVerbose.DEBUG("EDPluginDistlSignalStrengthv1_1.parseLabelitDistlOutput")
     xsDataImageQualityIndicators = None
     if _strLabelitDistlLogText is not None:
         xsDataImageQualityIndicators = XSDataImageQualityIndicators()
         for strLine in _strLabelitDistlLogText.split("\n"):
             if strLine.find("Spot Total") != -1:
                 iSpotTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setSpotTotal(XSDataInteger(iSpotTotal))
             elif strLine.find("In-Resolution Total") != -1:
                 iInResTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setInResTotal(XSDataInteger(iInResTotal))
             elif strLine.find("Good Bragg Candidates") != -1:
                 iGoodBraggCandidates = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setGoodBraggCandidates(XSDataInteger(iGoodBraggCandidates))
             elif strLine.find("Ice Rings") != -1:
                 iIceRings = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setIceRings(XSDataInteger(iIceRings))
             elif strLine.find("Method 1 Resolution") != -1:
                 fMethod1Res = float(strLine.split()[4])
                 xsDataImageQualityIndicators.setMethod1Res(XSDataDouble(fMethod1Res))
             elif strLine.find("Method 2 Resolution") != -1:
                 if strLine.split()[4] != "None":
                     fMethod2Res = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMethod2Res(XSDataDouble(fMethod2Res))
             elif strLine.find("Maximum unit cell") != -1:
                 if strLine.split()[4] != "None":
                     fMaxUnitCell = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMaxUnitCell(XSDataDouble(fMaxUnitCell))
             elif strLine.find("%Saturation, Top 50 Peaks") != -1:
                 fPctSaturationTop50Peaks = float(strLine.split()[5])
                 xsDataImageQualityIndicators.setPctSaturationTop50Peaks(XSDataDouble(fPctSaturationTop50Peaks))
             elif strLine.find("In-Resolution Ovrld Spots") != -1:
                 iInResolutionOvrlSpots = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setInResolutionOvrlSpots(XSDataInteger(iInResolutionOvrlSpots))
             elif strLine.find("Bin population cutoff for method 2 resolution") != -1:
                 fBinPopCutOffMethod2Res = float(strLine.split()[7][:-1])
                 xsDataImageQualityIndicators.setBinPopCutOffMethod2Res(XSDataDouble(fBinPopCutOffMethod2Res))
             elif strLine.find("Total integrated signal, pixel-ADC units above local background (just the good Bragg candidates)") != -1:
                 fTotalIntegratedSignal = float(strLine.split()[-1])
                 xsDataImageQualityIndicators.setTotalIntegratedSignal(XSDataDouble(fTotalIntegratedSignal))
             elif strLine.find("Signals range from") != -1:
                 listStrLine = strLine.split()
                 fSignalRangeMin = float(listStrLine[3])
                 fSignalRangeMax = float(listStrLine[5])
                 fSignalRangeAverage = float(listStrLine[-1])
                 xsDataImageQualityIndicators.setSignalRangeMin(XSDataDouble(fSignalRangeMin))
                 xsDataImageQualityIndicators.setSignalRangeMax(XSDataDouble(fSignalRangeMax))
                 xsDataImageQualityIndicators.setSignalRangeAverage(XSDataDouble(fSignalRangeAverage))
             elif strLine.find("Saturations range from") != -1:
                 listStrLine = strLine.split()
                 fSaturationRangeMin = float(listStrLine[3][:-1])
                 fSaturationRangeMax = float(listStrLine[5][:-1])
                 fSaturationRangeAverage = float(listStrLine[-1][:-1])
                 xsDataImageQualityIndicators.setSaturationRangeMin(XSDataDouble(fSaturationRangeMin))
                 xsDataImageQualityIndicators.setSaturationRangeMax(XSDataDouble(fSaturationRangeMax))
                 xsDataImageQualityIndicators.setSaturationRangeAverage(XSDataDouble(fSaturationRangeAverage))
     return xsDataImageQualityIndicators
Ejemplo n.º 2
0
 def parseLabelitDistlOutput(self, _strLabelitDistlLogText):
     self.DEBUG(
         "EDPluginDistlSignalStrengthThinClientv1_1.parseLabelitDistlOutput"
     )
     xsDataImageQualityIndicators = None
     if _strLabelitDistlLogText is not None:
         xsDataImageQualityIndicators = XSDataImageQualityIndicators()
         for strLine in _strLabelitDistlLogText.split("\n"):
             if strLine.find("Spot Total") != -1:
                 iSpotTotal = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setSpotTotal(
                     XSDataInteger(iSpotTotal))
             elif strLine.find("Method-2 Resolution Total") != -1:
                 iInResTotal = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setInResTotal(
                     XSDataInteger(iInResTotal))
             elif strLine.find("Good Bragg Candidates") != -1:
                 iGoodBraggCandidates = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setGoodBraggCandidates(
                     XSDataInteger(iGoodBraggCandidates))
             elif strLine.find("Ice Rings") != -1:
                 iIceRings = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setIceRings(
                     XSDataInteger(iIceRings))
             elif strLine.find("Method 1 Resolution") != -1:
                 fMethod1Res = float(strLine.split()[-1])
                 xsDataImageQualityIndicators.setMethod1Res(
                     XSDataDouble(fMethod1Res))
             elif strLine.find("Method 2 Resolution") != -1:
                 if strLine.split()[4] != "None":
                     fMethod2Res = float(strLine.split()[-1])
                     xsDataImageQualityIndicators.setMethod2Res(
                         XSDataDouble(fMethod2Res))
             elif strLine.find("Maximum unit cell") != -1:
                 if strLine.split()[4] != "None":
                     fMaxUnitCell = float(strLine.split()[-1])
                     xsDataImageQualityIndicators.setMaxUnitCell(
                         XSDataDouble(fMaxUnitCell))
             elif strLine.find("Saturation, Top 50 Peaks") != -1:
                 fPctSaturationTop50Peaks = float(strLine.split()[-2])
                 xsDataImageQualityIndicators.setPctSaturationTop50Peaks(
                     XSDataDouble(fPctSaturationTop50Peaks))
             elif strLine.find("In-resolution overloaded spots") != -1:
                 iInResolutionOvrlSpots = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setInResolutionOvrlSpots(
                     XSDataInteger(iInResolutionOvrlSpots))
             elif strLine.find(
                     "Total integrated signal, pixel-ADC units above local background"
             ) != -1:
                 fTotalIntegratedSignal = float(strLine.split()[-1])
                 xsDataImageQualityIndicators.setTotalIntegratedSignal(
                     XSDataDouble(fTotalIntegratedSignal))
     return xsDataImageQualityIndicators
 def parseLabelitDistlOutput(self, _strLabelitDistlLogText):
     EDVerbose.DEBUG("EDPluginLabelitDistlv1_1.parseLabelitDistlOutput")
     xsDataImageQualityIndicators = None
     if _strLabelitDistlLogText is not None:
         xsDataImageQualityIndicators = XSDataImageQualityIndicators()
         for strLine in _strLabelitDistlLogText.split("\n"):
             if strLine.find("Spot Total") != -1:
                 iSpotTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setSpotTotal(XSDataInteger(iSpotTotal))
             elif strLine.find("In-Resolution Total") != -1:
                 iInResTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setInResTotal(XSDataInteger(iInResTotal))
             elif strLine.find("Good Bragg Candidates") != -1:
                 iGoodBraggCandidates = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setGoodBraggCandidates(XSDataInteger(iGoodBraggCandidates))
             elif strLine.find("Ice Rings") != -1:
                 iIceRings = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setIceRings(XSDataInteger(iIceRings))
             elif strLine.find("Method 1 Resolution") != -1:
                 fMethod1Res = float(strLine.split()[4])
                 xsDataImageQualityIndicators.setMethod1Res(XSDataDouble(fMethod1Res))
             elif strLine.find("Method 2 Resolution") != -1:
                 if strLine.split()[4] != "None":
                     fMethod2Res = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMethod2Res(XSDataDouble(fMethod2Res))
             elif strLine.find("Maximum unit cell") != -1:
                 if strLine.split()[4] != "None":
                     fMaxUnitCell = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMaxUnitCell(XSDataDouble(fMaxUnitCell))
             elif strLine.find("%Saturation, Top 50 Peaks") != -1:
                 fPctSaturationTop50Peaks = float(strLine.split()[5])
                 xsDataImageQualityIndicators.setPctSaturationTop50Peaks(XSDataDouble(fPctSaturationTop50Peaks))
             elif strLine.find("In-Resolution Ovrld Spots") != -1:
                 iInResolutionOvrlSpots = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setInResolutionOvrlSpots(XSDataInteger(iInResolutionOvrlSpots))
             elif strLine.find("Bin population cutoff for method 2 resolution") != -1:
                 fBinPopCutOffMethod2Res = float(strLine.split()[7][:-1])
                 xsDataImageQualityIndicators.setBinPopCutOffMethod2Res(XSDataDouble(fBinPopCutOffMethod2Res))
     return xsDataImageQualityIndicators
 def parseLabelitDistlOutput(self, _strLabelitDistlLogText):
     EDVerbose.DEBUG("EDPluginDistlSignalStrengthThinClientv1_1.parseLabelitDistlOutput")
     xsDataImageQualityIndicators = None
     if _strLabelitDistlLogText is not None:
         xsDataImageQualityIndicators = XSDataImageQualityIndicators()
         for strLine in _strLabelitDistlLogText.split("\n"):
             if strLine.find("Spot Total") != -1:
                 iSpotTotal = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setSpotTotal(XSDataInteger(iSpotTotal))
             elif strLine.find("Method-2 Resolution Total") != -1:
                 iInResTotal = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setInResTotal(XSDataInteger(iInResTotal))
             elif strLine.find("Good Bragg Candidates") != -1:
                 iGoodBraggCandidates = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setGoodBraggCandidates(XSDataInteger(iGoodBraggCandidates))
             elif strLine.find("Ice Rings") != -1:
                 iIceRings = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setIceRings(XSDataInteger(iIceRings))
             elif strLine.find("Method 1 Resolution") != -1:
                 fMethod1Res = float(strLine.split()[-1])
                 xsDataImageQualityIndicators.setMethod1Res(XSDataDouble(fMethod1Res))
             elif strLine.find("Method 2 Resolution") != -1:
                 if strLine.split()[4] != "None":
                     fMethod2Res = float(strLine.split()[-1])
                     xsDataImageQualityIndicators.setMethod2Res(XSDataDouble(fMethod2Res))
             elif strLine.find("Maximum unit cell") != -1:
                 if strLine.split()[4] != "None":
                     fMaxUnitCell = float(strLine.split()[-1])
                     xsDataImageQualityIndicators.setMaxUnitCell(XSDataDouble(fMaxUnitCell))
             elif strLine.find("Saturation, Top 50 Peaks") != -1:
                 fPctSaturationTop50Peaks = float(strLine.split()[-2])
                 xsDataImageQualityIndicators.setPctSaturationTop50Peaks(XSDataDouble(fPctSaturationTop50Peaks))
             elif strLine.find("In-resolution overloaded spots") != -1:
                 iInResolutionOvrlSpots = int(strLine.split()[-1])
                 xsDataImageQualityIndicators.setInResolutionOvrlSpots(XSDataInteger(iInResolutionOvrlSpots))
             elif strLine.find("Total integrated signal, pixel-ADC units above local background") != -1:
                 fTotalIntegratedSignal = float(strLine.split()[-1])
                 xsDataImageQualityIndicators.setTotalIntegratedSignal(XSDataDouble(fTotalIntegratedSignal))
     return xsDataImageQualityIndicators
Ejemplo n.º 5
0
 def parseLabelitDistlOutput(self, _strLabelitDistlLogText):
     self.DEBUG("EDPluginLabelitDistlv1_1.parseLabelitDistlOutput")
     xsDataImageQualityIndicators = None
     if _strLabelitDistlLogText is not None:
         xsDataImageQualityIndicators = XSDataImageQualityIndicators()
         for strLine in _strLabelitDistlLogText.split("\n"):
             if strLine.find("Spot Total") != -1:
                 iSpotTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setSpotTotal(XSDataInteger(iSpotTotal))
             elif strLine.find("In-Resolution Total") != -1:
                 iInResTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setInResTotal(XSDataInteger(iInResTotal))
             elif strLine.find("Good Bragg Candidates") != -1:
                 iGoodBraggCandidates = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setGoodBraggCandidates(XSDataInteger(iGoodBraggCandidates))
             elif strLine.find("Ice Rings") != -1:
                 iIceRings = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setIceRings(XSDataInteger(iIceRings))
             elif strLine.find("Method 1 Resolution") != -1:
                 fMethod1Res = float(strLine.split()[4])
                 xsDataImageQualityIndicators.setMethod1Res(XSDataDouble(fMethod1Res))
             elif strLine.find("Method 2 Resolution") != -1:
                 if strLine.split()[4] != "None":
                     fMethod2Res = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMethod2Res(XSDataDouble(fMethod2Res))
             elif strLine.find("Maximum unit cell") != -1:
                 if strLine.split()[4] != "None":
                     fMaxUnitCell = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMaxUnitCell(XSDataDouble(fMaxUnitCell))
             elif strLine.find("%Saturation, Top 50 Peaks") != -1:
                 fPctSaturationTop50Peaks = float(strLine.split()[5])
                 xsDataImageQualityIndicators.setPctSaturationTop50Peaks(XSDataDouble(fPctSaturationTop50Peaks))
             elif strLine.find("In-Resolution Ovrld Spots") != -1:
                 iInResolutionOvrlSpots = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setInResolutionOvrlSpots(XSDataInteger(iInResolutionOvrlSpots))
             elif strLine.find("Bin population cutoff for method 2 resolution") != -1:
                 fBinPopCutOffMethod2Res = float(strLine.split()[7][:-1])
                 xsDataImageQualityIndicators.setBinPopCutOffMethod2Res(XSDataDouble(fBinPopCutOffMethod2Res))
     return xsDataImageQualityIndicators
Ejemplo n.º 6
0
 def parseLabelitDistlOutput(self, _strLabelitDistlLogText):
     self.DEBUG("EDPluginDistlSignalStrengthv1_1.parseLabelitDistlOutput")
     xsDataImageQualityIndicators = None
     if _strLabelitDistlLogText is not None:
         xsDataImageQualityIndicators = XSDataImageQualityIndicators()
         for strLine in _strLabelitDistlLogText.split("\n"):
             if strLine.find("Spot Total") != -1:
                 iSpotTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setSpotTotal(
                     XSDataInteger(iSpotTotal))
             elif strLine.find("In-Resolution Total") != -1:
                 iInResTotal = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setInResTotal(
                     XSDataInteger(iInResTotal))
             elif strLine.find("Good Bragg Candidates") != -1:
                 iGoodBraggCandidates = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setGoodBraggCandidates(
                     XSDataInteger(iGoodBraggCandidates))
             elif strLine.find("Ice Rings") != -1:
                 iIceRings = int(strLine.split()[3])
                 xsDataImageQualityIndicators.setIceRings(
                     XSDataInteger(iIceRings))
             elif strLine.find("Method 1 Resolution") != -1:
                 fMethod1Res = float(strLine.split()[4])
                 xsDataImageQualityIndicators.setMethod1Res(
                     XSDataDouble(fMethod1Res))
             elif strLine.find("Method 2 Resolution") != -1:
                 if strLine.split()[4] != "None":
                     fMethod2Res = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMethod2Res(
                         XSDataDouble(fMethod2Res))
             elif strLine.find("Maximum unit cell") != -1:
                 if strLine.split()[4] != "None":
                     fMaxUnitCell = float(strLine.split()[4])
                     xsDataImageQualityIndicators.setMaxUnitCell(
                         XSDataDouble(fMaxUnitCell))
             elif strLine.find("%Saturation, Top 50 Peaks") != -1:
                 fPctSaturationTop50Peaks = float(strLine.split()[5])
                 xsDataImageQualityIndicators.setPctSaturationTop50Peaks(
                     XSDataDouble(fPctSaturationTop50Peaks))
             elif strLine.find("In-Resolution Ovrld Spots") != -1:
                 iInResolutionOvrlSpots = int(strLine.split()[4])
                 xsDataImageQualityIndicators.setInResolutionOvrlSpots(
                     XSDataInteger(iInResolutionOvrlSpots))
             elif strLine.find(
                     "Bin population cutoff for method 2 resolution") != -1:
                 fBinPopCutOffMethod2Res = float(strLine.split()[7][:-1])
                 xsDataImageQualityIndicators.setBinPopCutOffMethod2Res(
                     XSDataDouble(fBinPopCutOffMethod2Res))
             elif strLine.find(
                     "Total integrated signal, pixel-ADC units above local background (just the good Bragg candidates)"
             ) != -1:
                 fTotalIntegratedSignal = float(strLine.split()[-1])
                 xsDataImageQualityIndicators.setTotalIntegratedSignal(
                     XSDataDouble(fTotalIntegratedSignal))
             elif strLine.find("Signals range from") != -1:
                 listStrLine = strLine.split()
                 fSignalRangeMin = float(listStrLine[3])
                 fSignalRangeMax = float(listStrLine[5])
                 fSignalRangeAverage = float(listStrLine[-1])
                 xsDataImageQualityIndicators.setSignalRangeMin(
                     XSDataDouble(fSignalRangeMin))
                 xsDataImageQualityIndicators.setSignalRangeMax(
                     XSDataDouble(fSignalRangeMax))
                 xsDataImageQualityIndicators.setSignalRangeAverage(
                     XSDataDouble(fSignalRangeAverage))
             elif strLine.find("Saturations range from") != -1:
                 listStrLine = strLine.split()
                 fSaturationRangeMin = float(listStrLine[3][:-1])
                 fSaturationRangeMax = float(listStrLine[5][:-1])
                 fSaturationRangeAverage = float(listStrLine[-1][:-1])
                 xsDataImageQualityIndicators.setSaturationRangeMin(
                     XSDataDouble(fSaturationRangeMin))
                 xsDataImageQualityIndicators.setSaturationRangeMax(
                     XSDataDouble(fSaturationRangeMax))
                 xsDataImageQualityIndicators.setSaturationRangeAverage(
                     XSDataDouble(fSaturationRangeAverage))
     return xsDataImageQualityIndicators