def testMergeTwoSubWedgesAdjascentInRotationAxis(self):
# First check two sub wedges which shouldn't be merged
edPluginSubWedgeMergev10 = self.createPlugin()
edPluginSubWedgeMergev10.configure()
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge.parseFile(
self.__strPathToReferenceInput)
xsDataSubWedge1 = xsDataInputSubWedgeMerge.getSubWedge()[0]
xsDataSubWedge2 = xsDataInputSubWedgeMerge.getSubWedge()[1]
xsDataSubWedgeMerged = edPluginSubWedgeMergev10.mergeTwoSubWedgesAdjascentInRotationAxis(
xsDataSubWedge1, xsDataSubWedge2)
EDAssert.equal(xsDataSubWedgeMerged, None)
# Then check two adjascent images
strPathToInputTwoAdjascentImages = os.path.join(
self.getPluginTestsDataHome(),
"XSDataInputSubWedgeMerge_twoAdjascentImages.xml")
xsDataInputSubWedgeMerge2 = XSDataInputSubWedgeMerge.parseFile(
strPathToInputTwoAdjascentImages)
xsDataSubWedge1 = xsDataInputSubWedgeMerge2.getSubWedge()[0]
xsDataSubWedge2 = xsDataInputSubWedgeMerge2.getSubWedge()[1]
xsDataSubWedgeMerged = edPluginSubWedgeMergev10.mergeTwoSubWedgesAdjascentInRotationAxis(
xsDataSubWedge1, xsDataSubWedge2)
xsDataSubWedgeMergedReference = XSDataSubWedge.parseFile(
os.path.join(self.getPluginTestsDataHome(),
"XSDataSubWedgeMerged_twoImages.xml"))
EDAssert.equal(xsDataSubWedgeMerged.marshal(),
xsDataSubWedgeMergedReference.marshal())
def createDataCollectionFromImageHeaders(self, _edPlugin):
"""
This method creates a list of XSDataSubwedges by reading the header of the images
given as a list of paths as input.
"""
self.DEBUG(
"EDPluginControlSubWedgeAssemblev1_1.createDataCollectionFromImageHeaders"
)
xsDataInputSubWedgeAssemble = _edPlugin.getDataInput()
listXSDataFile = xsDataInputSubWedgeAssemble.getFile()
if (len(listXSDataFile) > 0):
listSubWedge = []
iIndex = 1
for xsDataFile in listXSDataFile:
xsDataFileCopy = XSDataFile.parseString(xsDataFile.marshal())
xsDataInputReadImageHeader = XSDataInputReadImageHeader()
xsDataInputReadImageHeader.setImage(xsDataFileCopy)
self.__edPluginReadImageHeader = self.loadPlugin(
self.__strPluginReadImageHeaderName,
"ReadImageHeader_%d" % (iIndex))
self.__edPluginReadImageHeader.setDataInput(
xsDataInputReadImageHeader)
self.__edPluginReadImageHeader.executeSynchronous()
xsDataResultReadImageHeader = self.__edPluginReadImageHeader.getDataOutput(
)
bSuccess = False
if (xsDataResultReadImageHeader is not None):
xsDataSubWedge = xsDataResultReadImageHeader.getSubWedge()
if (xsDataSubWedge is not None):
xsDataSubWedge.setSubWedgeNumber(XSDataInteger(iIndex))
listSubWedge.append(xsDataSubWedge)
bSuccess = True
if (not bSuccess):
# Fix for bug #223: raise an error if an image could not be read
strErrorMessage = "EDPluginControlSubWedgeAssemblev1_1.createDataCollectionFromImageHeaders: %s %s" % (
self.__strPluginReadImageHeaderName, \
"Could not read header from image %s" % xsDataFileCopy.getPath().getValue())
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
iIndex += 1
if (not self.isFailure()):
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge()
for xsDataSubWedge in listSubWedge:
xsDataInputSubWedgeMerge.addSubWedge(xsDataSubWedge)
self.__edPluginSubWedgeMerge.setDataInput(
xsDataInputSubWedgeMerge)
self.__edPluginSubWedgeMerge.executeSynchronous()
def testMergeTwoSubWedgesAdjascentInRotationAxis(self):
# First check two sub wedges which shouldn't be merged
edPluginSubWedgeMergev10 = self.createPlugin()
edPluginSubWedgeMergev10.configure()
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge.parseFile(self.__strPathToReferenceInput)
xsDataSubWedge1 = xsDataInputSubWedgeMerge.getSubWedge()[0]
xsDataSubWedge2 = xsDataInputSubWedgeMerge.getSubWedge()[1]
xsDataSubWedgeMerged = edPluginSubWedgeMergev10.mergeTwoSubWedgesAdjascentInRotationAxis(xsDataSubWedge1, xsDataSubWedge2)
EDAssert.equal(xsDataSubWedgeMerged, None)
# Then check two adjascent images
strPathToInputTwoAdjascentImages = os.path.join(self.getPluginTestsDataHome(), "XSDataInputSubWedgeMerge_twoAdjascentImages.xml")
xsDataInputSubWedgeMerge2 = XSDataInputSubWedgeMerge.parseFile(strPathToInputTwoAdjascentImages)
xsDataSubWedge1 = xsDataInputSubWedgeMerge2.getSubWedge()[0]
xsDataSubWedge2 = xsDataInputSubWedgeMerge2.getSubWedge()[1]
xsDataSubWedgeMerged = edPluginSubWedgeMergev10.mergeTwoSubWedgesAdjascentInRotationAxis(xsDataSubWedge1, xsDataSubWedge2)
xsDataSubWedgeMergedReference = XSDataSubWedge.parseFile(os.path.join(self.getPluginTestsDataHome(), "XSDataSubWedgeMerged_twoImages.xml"))
EDAssert.equal(xsDataSubWedgeMerged.marshal(), xsDataSubWedgeMergedReference.marshal())
def testMergeListOfSubWedgesWithAdjascentRotationAxis(self):
edPluginSubWedgeMergev10 = self.createPlugin()
edPluginSubWedgeMergev10.configure()
# Check a list of nine adjascent images
strPathToInputNineAdjascentImages = os.path.join(self.getPluginTestsDataHome(), "XSDataInputSubWedgeMerge_nineAdjascentImages.xml")
xsDataInputSubWedgeMergeNine = XSDataInputSubWedgeMerge.parseFile(strPathToInputNineAdjascentImages)
xsDataSubWedgeMerged = edPluginSubWedgeMergev10.mergeListOfSubWedgesWithAdjascentRotationAxis(xsDataInputSubWedgeMergeNine.getSubWedge())
xsDataSubWedgeMergedReference = XSDataSubWedge.parseFile(os.path.join(self.getPluginTestsDataHome(), "XSDataSubWedgeMerged_nineImages.xml"))
EDAssert.equal(xsDataSubWedgeMerged[0].marshal(), xsDataSubWedgeMergedReference.marshal())
def createDataCollectionFromImageHeaders(self, _edPlugin):
"""
This method creates a list of XSDataSubwedges by reading the header of the images
given as a list of paths as input.
"""
EDVerbose.DEBUG("EDPluginControlSubWedgeAssemblev1_1.createDataCollectionFromImageHeaders")
xsDataInputSubWedgeAssemble = _edPlugin.getDataInput()
listXSDataFile = xsDataInputSubWedgeAssemble.getFile()
if (len(listXSDataFile) > 0):
listSubWedge = []
iIndex = 1
for xsDataFile in listXSDataFile:
xsDataFileCopy = XSDataFile.parseString(xsDataFile.marshal())
xsDataInputReadImageHeader = XSDataInputReadImageHeader()
xsDataInputReadImageHeader.setImage(xsDataFileCopy)
self.__edPluginReadImageHeader = self.loadPlugin(self.__strPluginReadImageHeaderName, "ReadImageHeader_%d" % (iIndex))
self.__edPluginReadImageHeader.setDataInput(xsDataInputReadImageHeader)
self.__edPluginReadImageHeader.executeSynchronous()
xsDataResultReadImageHeader = self.__edPluginReadImageHeader.getDataOutput()
bSuccess = False
if (xsDataResultReadImageHeader is not None):
xsDataSubWedge = xsDataResultReadImageHeader.getSubWedge()
if (xsDataSubWedge is not None):
xsDataSubWedge.setSubWedgeNumber(XSDataInteger(iIndex))
listSubWedge.append(xsDataSubWedge)
bSuccess = True
if (not bSuccess):
# Fix for bug #223: raise an error if an image could not be read
strErrorMessage = "EDPluginControlSubWedgeAssemblev1_1.createDataCollectionFromImageHeaders: %s %s" % (
self.__strPluginReadImageHeaderName, \
"Could not read header from image %s" % xsDataFileCopy.getPath().getValue())
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
iIndex += 1
if (not self.isFailure()):
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge()
for xsDataSubWedge in listSubWedge:
xsDataInputSubWedgeMerge.addSubWedge(xsDataSubWedge)
self.__edPluginSubWedgeMerge.setDataInput(xsDataInputSubWedgeMerge)
self.__edPluginSubWedgeMerge.executeSynchronous()
def testSortSubWedgesOnExperimentalCondition(self):
# First check two sub wedges with identical experimental conditions
edPluginSubWedgeMergev10 = self.createPlugin()
edPluginSubWedgeMergev10.configure()
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge.parseFile(self.__strPathToReferenceInput)
edListSubWedgeSorted = edPluginSubWedgeMergev10.sortSubWedgesOnExperimentalCondition(xsDataInputSubWedgeMerge)
# Check that we got a list with one element
EDAssert.equal(len(edListSubWedgeSorted), 1)
# Then modify one sub wedge
xsDataSubWedge1 = xsDataInputSubWedgeMerge.getSubWedge()[0]
xsDataSubWedge1.getExperimentalCondition().getDetector().setDistance(XSDataLength(300.0))
edListSubWedgeSorted = edPluginSubWedgeMergev10.sortSubWedgesOnExperimentalCondition(xsDataInputSubWedgeMerge)
# Check that we got a list with two elements
EDAssert.equal(len(edListSubWedgeSorted), 2)
def createDataCollectionFromImageHeaders(self, _edPlugin):
"""
This method creates a list of XSDataSubwedges by reading the header of the images
given as a list of paths as input.
"""
EDVerbose.DEBUG("EDPluginControlSubWedgeAssemblev10.createDataCollectionFromImageHeaders")
xsDataInputSubWedgeAssemble = _edPlugin.getDataInput()
listXSDataFile = xsDataInputSubWedgeAssemble.getFile()
if (len(listXSDataFile) > 0):
listSubWedge = []
iIndex = 1
for xsDataFile in listXSDataFile:
xsDataFileCopy = XSDataFile.parseString(xsDataFile.marshal())
xsDataInputReadImageHeader = XSDataInputReadImageHeader()
xsDataInputReadImageHeader.setImage(xsDataFileCopy)
self.__edPluginReadImageHeader = self.loadPlugin(self.__strPluginReadImageHeaderName, "ReadImageHeader_%d" % (iIndex))
self.__edPluginReadImageHeader.setDataInput(xsDataInputReadImageHeader)
self.__edPluginReadImageHeader.executeSynchronous()
xsDataResultReadImageHeader = self.__edPluginReadImageHeader.getDataOutput()
xsDataSubWedge = xsDataResultReadImageHeader.getSubWedge()
if (xsDataSubWedge is None):
# Fix for bug #223: raise an error if an image could not be read
errorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginControlSubWedgeAssemblev10.createDataCollectionFromImageHeaders", \
self.__strPluginReadImageHeaderName, \
"Could not read header from image %s" % xsDataFileCopy.getPath().getValue())
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
listSubWedge.append(xsDataSubWedge)
iIndex += 1
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge()
for xsDataSubWedge in listSubWedge:
xsDataInputSubWedgeMerge.addSubWedge(xsDataSubWedge)
self.__edPluginSubWedgeMerge.setDataInput(xsDataInputSubWedgeMerge)
self.__edPluginSubWedgeMerge.executeSynchronous()
def testMergeListOfSubWedgesWithAdjascentRotationAxis(self):
edPluginSubWedgeMergev10 = self.createPlugin()
edPluginSubWedgeMergev10.configure()
# Check a list of nine adjascent images
strPathToInputNineAdjascentImages = os.path.join(
self.getPluginTestsDataHome(),
"XSDataInputSubWedgeMerge_nineAdjascentImages.xml")
xsDataInputSubWedgeMergeNine = XSDataInputSubWedgeMerge.parseFile(
strPathToInputNineAdjascentImages)
xsDataSubWedgeMerged = edPluginSubWedgeMergev10.mergeListOfSubWedgesWithAdjascentRotationAxis(
xsDataInputSubWedgeMergeNine.getSubWedge())
xsDataSubWedgeMergedReference = XSDataSubWedge.parseFile(
os.path.join(self.getPluginTestsDataHome(),
"XSDataSubWedgeMerged_nineImages.xml"))
EDAssert.equal(xsDataSubWedgeMerged[0].marshal(),
xsDataSubWedgeMergedReference.marshal())
def testSortSubWedgesOnExperimentalCondition(self):
# First check two sub wedges with identical experimental conditions
edPluginSubWedgeMergev10 = self.createPlugin()
edPluginSubWedgeMergev10.configure()
xsDataInputSubWedgeMerge = XSDataInputSubWedgeMerge.parseFile(
self.__strPathToReferenceInput)
edListSubWedgeSorted = edPluginSubWedgeMergev10.sortSubWedgesOnExperimentalCondition(
xsDataInputSubWedgeMerge)
# Check that we got a list with one element
EDAssert.equal(len(edListSubWedgeSorted), 1)
# Then modify one sub wedge
xsDataSubWedge1 = xsDataInputSubWedgeMerge.getSubWedge()[0]
xsDataSubWedge1.getExperimentalCondition().getDetector().setDistance(
XSDataLength(300.0))
edListSubWedgeSorted = edPluginSubWedgeMergev10.sortSubWedgesOnExperimentalCondition(
xsDataInputSubWedgeMerge)
# Check that we got a list with two elements
EDAssert.equal(len(edListSubWedgeSorted), 2)