def calculate_discharge(params, mask, pnet):
'''
Calculate the accumulated water discharge
'''
ldd = ascraster.Asciigrid(ascii_file=params.ldd, mask=mask, numtype=int)
if params.ldebug: print(params.ldd + " has been read.")
landarea = ascraster.Asciigrid(ascii_file=params.landarea,
mask=mask,
numtype=float)
if params.ldebug: print(params.landarea + " has been read.")
water = ascraster.duplicategrid(landarea)
# Calculate accumulated water flux of each grid cell to the mouth of the river basin. Make discharge in km3
# Convert pnet [mm/yr] to km3 by multiplying with landarea and 10e-6 (conversion from mm to km)
for icell in range(landarea.length):
wt = pnet.get_data(icell, 0.0) * landarea.get_data(icell, 0.0) * 1.0e-6
water.set_data(icell, wt)
discharge = accuflux.accuflux(ldd, water, negative_flux_possible=1)
# Write discharge to output file:
discharge.write_ascii_file(os.path.join(params.outputdir, "discharge.asc"))
return discharge
def calculate_discharge(params,mask,pnet):
'''
Calculate the accumulated water discharge
'''
ldd = ascraster.Asciigrid(ascii_file=params.ldd,mask=mask,numtype=int)
if params.ldebug: print params.ldd + " has been read."
landarea = ascraster.Asciigrid(ascii_file=params.landarea,mask=mask,numtype=float)
if params.ldebug: print params.landarea + " has been read."
water = ascraster.duplicategrid(landarea)
# Calculate accumulated water flux of each grid cell to the mouth of the river basin. Make discharge in km3
# Convert pnet [mm/yr] to km3 by multiplying with landarea and 10e-6 (conversion from mm to km)
for icell in range(landarea.length):
wt = pnet.get_data(icell,0.0) * landarea.get_data(icell,0.0) * 1.0e-6
water.set_data(icell,wt)
discharge = accuflux.accuflux(ldd,water,negative_flux_possible=1)
# Write discharge to output file:
discharge.write_ascii_file(os.path.join(params.outputdir,"discharge.asc"))
return discharge
def run_watermodel(args):
'''
Run N model main routine
@param listargs: list of arguments passed trough command-line or other script
Must look like sys.argv so make sure is starts with scriptname.
'''
# Parse command-line arguments and set parameters for script
try:
param = cmd_options_water.InputWater(args)
params = param.options
params_var = param.options_var
except SystemExit:
raise MyError("Error has occured in the reading of the commandline options.")
# Start timer and logging
s = my_sys.SimpleTimer()
log = my_logging.Log(params.outputdir,"%s_%i.log" % (params.scenarioname,params.year))
print "Log will be written to %s" % log.logFile
# If no arguments are provided do a run with defaults in params
if len(args) == 0:
log.write_and_print("No arguments provided: starting default run...")
# time start of run
log.write_and_print("Starting run....")
log.write("# Parameters used:",print_time=False,lcomment=False)
for option in str(params_var).split(", "):
log.write("--%s = %s" % (option.split(": ")[0].strip("{").strip("'"),
option.split(": ")[1].strip("}").strip("'")),
print_time=False,lcomment=False)
log.write("All parameters used:")
for option in str(params).split(", "):
log.write("# %s = %s" % (option.split(": ")[0].strip("{").strip("'"),
option.split(": ")[1].strip("}").strip("'")),
print_time=False,lcomment=False)
log.write("# End of all parameters used.",print_time=False,lcomment=False)
# Check whether there are command-line arguments which are not used
if (len(param.args) > 0):
txt = "The following command line arguments will not be used:"
log.write_and_print(txt + str(param.args))
# Write svn information of input and scripts to log file.
log.write("******************************************************",print_time=False,lcomment=True)
log.write("Version information:",print_time=False,lcomment=True)
log.write("Version information main script:",print_time=False,lcomment=True)
log.write("Revision $LastChangedDate: 2013-09-25 13:37:10 +0200 (Tue, 25 Sep 2013)",print_time=False,lcomment=True)
log.write("Date $LastChangedRevision: 344 $",print_time=False,lcomment=True)
#message = get_versioninfo.get_versioninfo(params.inputdir,params.outputdir)
#message.extend(get_versioninfo.get_versioninfo("tools",params.outputdir))
#for item in range(len(message)):
# log.write(str(message[item]),print_time=False,lcomment=True)
log.write("******************************************************",print_time=False,lcomment=True)
# Read mask of the input grids. We take the iso grid as mask for this.
# The mask takes care to do the calculations on an efficient way. Only
# the grid cells which are in the mask are calculated and stored.
if (params.lmask):
mask = ascraster.create_mask(params.file_mask, 0.0,'GT',numtype=float)
log.write_and_print(s.interval("Reading mask"))
else:
mask = None
log.write_and_print(s.interval("No mask is used for this simulation."))
# Read original flow path direction map. Determination of the flow path is only possible in masked mode!
# flowdir is expected on the fixed input directory.
# if (params.lcreate_ldd_basinid == 1):
# flowdir = ascraster.Asciigrid(ascii_file=os.path.join(params.fixinputdir,params.file_flowdir),mask=mask,numtype=int)
# Change the flow dir numbers to PCraster format and create ldd and basinid map.
# ldd = change_flowdir.change_flowdir(flowdir,mask,params.outputdir)
# log.write_and_print(s.interval("Ldd conversion ready."))
# raise MyError0("Ready with creation of ldd and basinid")
ldd = ascraster.Asciigrid(ascii_file=params.file_ldd,mask=mask,numtype=int)
# Make dummy map with nodata in it.
dummy_grid = ascraster.duplicategrid(ldd)
# Make all values nodata
dummy_grid.add_values(dummy_grid.length*[dummy_grid.nodata_value])
# Read landarea in km2
landarea_grid = ascraster.Asciigrid(ascii_file=params.landarea,mask=mask,numtype=float)
# Convert landarea from m2 to km2
#landarea_grid.multiply(1.0e-6)
# Calculate net precipitation in mm/yr
#pnet = netprecip.calculate(params.inputdir,mask,params.outputdir)
# Calculate accumulated water flux of each grid cell to the mouth of the river basin. Make discharge in km3
# Convert pnet [mm/yr] to km3 by multiplying with landarea (m2) and 10e-6 (conversion from mm to km)
#water = ascraster.duplicategrid(landarea_grid)
#for icell in range(landarea_grid.length):
# wt = pnet.get_data(icell,0.0) * landarea_grid.get_data(icell,0.0) * 1.0e-6
# # Add water use of the population (and conversion from liters per day to km3 per year)
# water.set_data(icell,wt)
#discharge = accuflux.accuflux(ldd,water,negative_flux_possible=1)
# Write discharge to output file:
#discharge.write_ascii_file(params.filedischarge)
#log.write_and_print(s.interval("Ready with calculating discharge."))
# Get the N emission from population. This are yearly loads. So divide with timespan.
N_emiss_point = ascraster.Asciigrid(ascii_file=params.file_gemnsw,mask=mask,numtype=float)
P_emiss_point = ascraster.Asciigrid(ascii_file=params.file_gempsw,mask=mask,numtype=float)
N_emiss_point.divide(float(params.timespan))
P_emiss_point.divide(float(params.timespan))
# Retention on point sources
N_emiss_point.multiply(1.0 - float(params.N_retention_point))
P_emiss_point.multiply(1.0 - float(params.P_retention_point))
# Get the fertilizer emission from agriculture
N_emiss_agri_fert = ascraster.Asciigrid(ascii_file=params.fileNfert,mask=mask,numtype=float)
P_emiss_agri_fert = ascraster.Asciigrid(ascii_file=params.filePfert,mask=mask,numtype=float)
N_emiss_agri_fert.divide(float(params.timespan))
P_emiss_agri_fert.divide(float(params.timespan))
# Retention on agricultural sources
N_emiss_agri_fert.multiply(1.0 - float(params.N_retention_agri))
P_emiss_agri_fert.multiply(1.0 - float(params.P_retention_agri))
# Get the manure emission from agriculture (livestock)
N_emiss_agri_man = ascraster.Asciigrid(ascii_file=params.fileNmanure,mask=mask,numtype=float)
P_emiss_agri_man = ascraster.Asciigrid(ascii_file=params.filePmanure,mask=mask,numtype=float)
N_emiss_agri_man.divide(float(params.timespan))
P_emiss_agri_man.divide(float(params.timespan))
# Retention on agricultural sources
N_emiss_agri_man.multiply(1.0 - float(params.N_retention_agri))
P_emiss_agri_man.multiply(1.0 - float(params.P_retention_agri))
# Get the emission from aquaculture
N_emiss_aqua = ascraster.Asciigrid(ascii_file=params.fileNaqua,mask=mask,numtype=float)
P_emiss_aqua = ascraster.Asciigrid(ascii_file=params.filePaqua,mask=mask,numtype=float)
# Retention on aquaculture sources
N_emiss_aqua.multiply(1.0 - float(params.N_retention_aqua))
P_emiss_aqua.multiply(1.0 - float(params.P_retention_aqua))
# Route all to the streams to the mouth of the river.
accu_area = accuflux.accuflux(ldd,landarea_grid,negative_flux_possible=0)
accu_N_emiss_point = accuflux.accuflux(ldd,N_emiss_point,negative_flux_possible=0)
accu_P_emiss_point = accuflux.accuflux(ldd,P_emiss_point,negative_flux_possible=0)
accu_N_emiss_agri_fert = accuflux.accuflux(ldd,N_emiss_agri_fert,negative_flux_possible=0)
accu_P_emiss_agri_fert = accuflux.accuflux(ldd,P_emiss_agri_fert,negative_flux_possible=0)
accu_N_emiss_agri_man = accuflux.accuflux(ldd,N_emiss_agri_man,negative_flux_possible=0)
accu_P_emiss_agri_man = accuflux.accuflux(ldd,P_emiss_agri_man,negative_flux_possible=0)
accu_N_emiss_aqua = accuflux.accuflux(ldd,N_emiss_aqua,negative_flux_possible=0)
accu_P_emiss_aqua = accuflux.accuflux(ldd,P_emiss_aqua,negative_flux_possible=0)
# Add all sources into one file.
accu_N_emiss = ascraster.duplicategrid(accu_N_emiss_point)
accu_N_emiss.add(accu_N_emiss_agri_fert)
accu_N_emiss.add(accu_N_emiss_agri_man)
accu_N_emiss.add(accu_N_emiss_aqua)
accu_P_emiss = ascraster.duplicategrid(accu_P_emiss_point)
accu_P_emiss.add(accu_P_emiss_agri_fert)
accu_P_emiss.add(accu_P_emiss_agri_man)
accu_P_emiss.add(accu_P_emiss_aqua)
# Create retention grid for N and P.
#Nret_grid = ascraster.duplicategrid(dummy_grid)
#Nret_grid.add_values(Nret_grid.length*[params.N_retention])
#Pret_grid = ascraster.duplicategrid(dummy_grid)
#Pret_grid.add_values(Nret_grid.length*[params.P_retention])
# Let the nitrogen flow through the basins.
#accu_N_emiss = accuflux.accuflux(ldd,N_emiss,retentionmap=Nret_grid,negative_flux_possible=0)
#accu_P_emiss = accuflux.accuflux(ldd,P_emiss,retentionmap=Pret_grid,negative_flux_possible=0)
#accu_N_emiss = accuflux.accuflux(ldd,N_emiss,negative_flux_possible=0)
#accu_P_emiss = accuflux.accuflux(ldd,P_emiss,negative_flux_possible=0)
# Calculate the concentrations in the stream
#N_conc = ascraster.duplicategrid(accu_N_emiss)
#P_conc = ascraster.duplicategrid(accu_P_emiss)
# Divide accu_N_emiss by discharge
#N_conc.divide(discharge,default_nodata_value = 0.0)
#P_conc.divide(discharge,default_nodata_value = 0.0)
# Convert unit from kg/km3 to mgN/l
#N_conc.multiply(1.0e-6)
#P_conc.multiply(1.0e-6)
# Write Nload and concentration to output file:
accu_N_emiss.write_ascii_file(params.file_nload)
#N_conc.write_ascii_file(params.file_nconc)
accu_P_emiss.write_ascii_file(params.file_pload)
#P_conc.write_ascii_file(params.file_pconc)
log.write_and_print(s.interval("Ready with calculating of N and P load and concentration in grid cells."))
# Read basinid
basinid = ascraster.Asciigrid(ascii_file=params.file_basinid,mask=mask,numtype=int)
# Make a dictionary with the index of each river mouth
mouth_dict = {}
for icell in range(basinid.length):
id = int(basinid.get_data(icell,-1))
if (id > 0):
ldd_cell = int(ldd.get_data(icell,-1))
if (ldd_cell == 5):
# I found a river mouth
mouth_dict[id] = icell
# Put accumulated information into a dictionary
output_dict ={}
for key in mouth_dict:
output_dict[key] = general_class.General()
output_dict[key].add_item("basinid",key)
output_dict[key].add_item("Area",accu_area.get_data(mouth_dict[key]))
output_dict[key].add_item("Nload_point",accu_N_emiss_point.get_data(mouth_dict[key]))
output_dict[key].add_item("Nload_fert",accu_N_emiss_agri_fert.get_data(mouth_dict[key]))
output_dict[key].add_item("Nload_manure",accu_N_emiss_agri_man.get_data(mouth_dict[key]))
output_dict[key].add_item("Nload_aqua",accu_N_emiss_aqua.get_data(mouth_dict[key]))
output_dict[key].add_item("Nload_total",accu_N_emiss.get_data(mouth_dict[key]))
#output_dict[key].add_item("discharge",discharge.get_data(mouth_dict[key]))
#output_dict[key].add_item("Nconc",N_conc.get_data(mouth_dict[key]))
output_dict[key].add_item("Pload_point",accu_P_emiss_point.get_data(mouth_dict[key]))
output_dict[key].add_item("Pload_fert",accu_P_emiss_agri_fert.get_data(mouth_dict[key]))
output_dict[key].add_item("Pload_manure",accu_P_emiss_agri_man.get_data(mouth_dict[key]))
output_dict[key].add_item("Pload_aqua",accu_P_emiss_aqua.get_data(mouth_dict[key]))
output_dict[key].add_item("Pload_total",accu_P_emiss.get_data(mouth_dict[key]))
#output_dict[key].add_item("Pconc",P_conc.get_data(mouth_dict[key]))
# Make a list of keys and sort this for output purpose
outputlist = []
for key in mouth_dict:
outputlist.append(key)
outputlist.sort()
fp = open(params.fileoutput_table,"w")
lheader = True
for key in outputlist:
output_dict[key].write(fp,lheader=lheader,sep=";")
lheader = False
fp.close()
log.write_and_print(s.total("Total run"))
del log