def __init__(self, **keyval):
keys = {
'file': "", # fitsfile cube or map (or casa/miriad)
'basename': "", # override basename (useful for shorter names)
'pb': "", # PB cube or map
'usepb': True, # use PB, or was it just given for downstream
'mask': True, # define a mask where data==0.0 if no mask present
'box': [], # [] or z1,z2 or x1,y1,x2,y2 or x1,y1,z1,x2,y2,z2
'edge': [], # [] or zl,zr - number of edge channels
'smooth':
[], # pixel smoothing size applied to data (can be slow) - see also Smooth_AT
'variflow': False, # requires manual sub-flow management for now
'vlsr': -999999.99, # force a VLSR (see also LineID)
'restfreq': -1.0, # alternate VLSRf specification
# 'symlink' : False, #
# 'autobox' : False, # automatically cut away spatial and spectral slices that are masked
# 'cbeam' : 0.5, # channel beam variation allowed in terms of pixel size to use median beam
}
AT.__init__(self, keys, keyval)
self._version = "1.1.5"
self.set_bdp_in() # no input BDP
self.set_bdp_out([
(SpwCube_BDP, 1), # one or two output BDPs
(Image_BDP, 0), # optional PB if there was an pb= input
])
def __init__(self, **keyval):
keys = {
"basename" : "", # defaults to BDP derived
}
AT.__init__(self,keys,keyval)
self._version = "1.0.0"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED)])
self.set_bdp_out([])
def __init__(self,**keyval):
keys = {"file" : "",
"touch": True,
"exist": True}
AT.__init__(self,keys,keyval)
self._version = "1.0.0"
self.set_bdp_in ([(File_BDP,1,bt.REQUIRED)])
self.set_bdp_out([(File_BDP,1)])
def __init__(self, **keyval):
keys = {
"basename": "", # defaults to BDP derived
}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED)])
self.set_bdp_out([])
def __init__(self,**keyval):
keys = {
}
AT.__init__(self,keys,keyval)
self._version = "0.0.1"
self.set_bdp_in([(Image_BDP,1,bt.REQUIRED),
(CubeStats_BDP,1,bt.OPTIONAL)])
self.set_bdp_out([])
def __init__(self, **keyval):
keys = {"equalize" : False, # default to no equalization and no regridding
"pad" : 5, # default to 5 channels on either side
}
AT.__init__(self, keys, keyval)
self._version = "1.0.2"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(LineList_BDP, 1, bt.REQUIRED)])
self.set_bdp_out([(LineCube_BDP, 0)])
def __init__(self, **keyval):
keys = {
"equalize": False, # default to no equalization and no regridding
"pad": 5, # default to 5 channels on either side
}
AT.__init__(self, keys, keyval)
self._version = "1.0.2"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(LineList_BDP, 1, bt.REQUIRED)])
self.set_bdp_out([(LineCube_BDP, 0)])
def __init__(self,**keyval):
keys = {"robust" : [], # signal rejection parameters
"ppp" : False, # PeakPointPlot
"maxvrms" : 2.0, # clip varying RMS (-1 to skip)
"psample" : -1, # if > 0, spatial sampling rate for PeakStats
}
AT.__init__(self,keys,keyval)
self._version = "1.0.6"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED)])
self.set_bdp_out([(CubeStats_BDP, 1)])
def __init__(self,**keyval):
keys = {"file" : "",
"m" : 0,
"n" : 2,
"touch" : False,
"exist" : False}
AT.__init__(self,keys,keyval)
self._version = "1.0.0"
self.set_bdp_in ([(File_BDP,self._keys.pop('m'),bt.REQUIRED)])
self.set_bdp_out([(File_BDP,1), (File_BDP,0)])
def __init__(self,**keyval):
keys = {"numsigma" : 3.0, # N-sigma
"range" : [], # optional channel range
"nchan" : 0, # number of channels around the channel where the peak is
}
AT.__init__(self,keys,keyval)
self._version = "1.0.1"
self.set_bdp_in([(Image_BDP,1,bt.REQUIRED),
# @todo optional 2nd PVSlice can be used to draw the template from
(CubeStats_BDP,1,bt.REQUIRED)])
self.set_bdp_out([(PVCorr_BDP,1)])
def __init__(self, **keyval):
keys = {
"do_spatial_regrid": True,
"pix_scale" : -1.0,
"do_freq_regrid": False,
"chan_width" : -1.0
}
AT.__init__(self,keys,keyval)
self._version = "1.0.0"
self.set_bdp_in([(SpwCube_BDP,0,bt.REQUIRED)])
self.set_bdp_out([(SpwCube_BDP,0)])
def __init__(self, **keyval):
keys = {
"do_spatial_regrid": True,
"pix_scale": -1.0,
"do_freq_regrid": False,
"chan_width": -1.0
}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
self.set_bdp_in([(SpwCube_BDP, 0, bt.REQUIRED)])
self.set_bdp_out([(SpwCube_BDP, 0)])
def __init__(self,**keyval):
keys = {"pos" : [], # one or more pairs of int's or ra/dec strings
"sources" : [0], # select which sources from a SourceList
"xaxis" : "", # currently still ignored
}
AT.__init__(self,keys,keyval)
self._version = "1.0.3"
self.set_bdp_in( [(Image_BDP, 1,bt.REQUIRED), # 0: cube: SpwCube or LineCube allowed
(CubeStats_BDP, 1,bt.OPTIONAL), # 1: stats, uses maxpos
(Moment_BDP, 1,bt.OPTIONAL), # 2: map, uses the max in this image as pos=
(SourceList_BDP, 1,bt.OPTIONAL)]) # 3: source list, for positions
self.set_bdp_out([(CubeSpectrum_BDP,1)])
def __init__(self, **keyval):
keys = {
"file": "",
"n": 2,
"subdir": False,
"touch": False,
"exist": False
}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
self.set_bdp_in([(File_BDP, 1, bt.REQUIRED)])
self.set_bdp_out([(File_BDP, 1), (File_BDP, 0)])
def __init__(self, **keyval):
keys = {
"bmaj" : {'value': -1.0, 'unit': 'arcsec'},
"bmin" : {'value': -1.0, 'unit': 'arcsec'},
"bpa" : -1.0,
"velres" : {'value': -1.0, 'unit': 'pixel'},
}
AT.__init__(self,keys,keyval)
self._version = "1.0.5"
self.set_bdp_in([(SpwCube_BDP,0,bt.REQUIRED)])
self.set_bdp_out([(SpwCube_BDP,0)])
def __init__(self, **keyval):
keys = {"numsigma" : 6.0, # default to 5 sigma
"sigma" : -1.0, # default to grab sigma from CubeStats BDP
"region" : "", # default to entire map
"robust" : ['hin',1.5], # default to classic MAD
"snmax" : 35.0, # default to limit dynamic range to 100
}
AT.__init__(self,keys,keyval)
self._version = "1.0.5"
self.set_bdp_in([(Image_BDP,2,bt.OPTIONAL),
(CubeStats_BDP,1,bt.OPTIONAL)])
self.set_bdp_out([(SourceList_BDP, 1)])
def __init__(self, **keyval):
# set the key words up with default values
keys = {"yourname": "", "planet": ""}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
# must call even if task takes no input bdp, so that
# various internal AT values are set correctly
self.set_bdp_in()
self.set_bdp_out([(HelloWorld_BDP, 1)])
self._bdp_in_order_list = []
self._bdp_in_order_type = []
def __init__(self, **keyval):
keys = {
"numsigma" : 2.0, # default to 2.0*sigma cutoff
"sigma" : -1.0, # default to CubeStats rms(freq)
"linesum" : True, # Select line segments for from the (optional) LineList
"pad" : 5, # number of channels to pad onto the line segments from LineList
}
AT.__init__(self,keys,keyval)
self._version = "1.0.2"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(CubeStats_BDP, 1, bt.OPTIONAL),
(LineList_BDP, 1, bt.OPTIONAL)]) # LineSegment_BDP also allowed
self.set_bdp_out([(Moment_BDP,1)])
def __init__(self, **keyval):
keys = {
"contsub" : [], # see also Ingest_AT (although deprecated there now)
"pad" : 5, # see also LineCube_AT
"fitorder" : 0, # polynomial order
}
AT.__init__(self,keys,keyval)
self._version = "1.0.2"
self.set_bdp_in([(SpwCube_BDP, 1, bt.REQUIRED), # input spw cube
(LineList_BDP, 1, bt.OPTIONAL), # will catch SegmentList as well
])
self.set_bdp_out([(SpwCube_BDP, 1), # output line cube (.lim)
(Image_BDP, 1)], # output cont map (.cim)
)
def __init__(self, **keyval):
keys = {
"chans" : [], # 0-based channel range, e.g. [5,10]
"normalize" : False,
"method" : ("", {"key1": 0, "key2": 1.0, "key3": "abc"}),
"cmap" : "jet",
}
AT.__init__(self,keys,keyval)
self._version = "1.0.1"
self.set_bdp_in([(Image_BDP, 0, bt.REQUIRED)]) # 2 or more should be input
# @TODO: Why is OverlapIntegral_BDP not used here,
# since the output is a Table and an Image
self.set_bdp_out([(Image_BDP,1)]) # 1 is output
def __init__(self,**keyval):
# set the key words up with default values
keys = {"yourname": "",
"planet" : ""}
AT.__init__(self,keys,keyval)
self._version = "1.0.0"
# must call even if task takes no input bdp, so that
# various internal AT values are set correctly
self.set_bdp_in()
self.set_bdp_out([(HelloWorld_BDP,1)])
self._bdp_in_order_list = []
self._bdp_in_order_type = []
def __init__(self,**keyval):
keys = {"slice" : [], # x0,y0,x1,y1 ? could be line= ?
"slit" : [], # xc,yc,len,pa pick one of slice= or slit=
"width" : 1, # odd integer!
"clip" : 0.0, # clip value (in terms of sigma)
"gamma" : 1.0, # gamma factor for analyzing map MOI
"pvsmooth" : [], # P and V smoothing (in pixel)
#"major" : True, # (TODO) major or minor axis, not used yet
}
AT.__init__(self,keys,keyval)
self._version = "1.0.3"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED), # SpwCube
(Moment_BDP, 1, bt.OPTIONAL), # Moment0 or CubeSum
(CubeStats_BDP, 1, bt.OPTIONAL)]) # was: PeakPointPlot
self.set_bdp_out([(PVSlice_BDP, 1)])
def __init__(self, **keyval):
keys = {
"numsigma": 3.0, # N-sigma
"range": [], # optional channel range
"nchan":
0, # number of channels around the channel where the peak is
}
AT.__init__(self, keys, keyval)
self._version = "1.0.1"
self.set_bdp_in([
(Image_BDP, 1, bt.REQUIRED),
# @todo optional 2nd PVSlice can be used to draw the template from
(CubeStats_BDP, 1, bt.REQUIRED)
])
self.set_bdp_out([(PVCorr_BDP, 1)])
def __init__(self, **keyval):
keys = {
"moments": [0], # default to moment 0
"numsigma": [2.0], # default to 2 sigma
"sigma": -1.0, # default to determine sigma internally
"chans": "", # default to select all channels
"mom0clip": 0.0, # default to not clip
"variflow": False, # default to manual sub-flow management
}
AT.__init__(self, keys, keyval)
self._version = "1.0.3"
# set input types
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(CubeStats_BDP, 1, bt.OPTIONAL)])
# set output types
self.set_bdp_out([(Moment_BDP, 0)])
def __init__(self, **keyval):
keys = {
"numsigma": 2.0, # default to 2.0*sigma cutoff
"sigma": -1.0, # default to CubeStats rms(freq)
"linesum":
True, # Select line segments for from the (optional) LineList
"pad":
5, # number of channels to pad onto the line segments from LineList
}
AT.__init__(self, keys, keyval)
self._version = "1.0.2"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(CubeStats_BDP, 1, bt.OPTIONAL),
(LineList_BDP, 1, bt.OPTIONAL)
]) # LineSegment_BDP also allowed
self.set_bdp_out([(Moment_BDP, 1)])
def __init__(self, **keyval):
keys = {"numsigma" : 5.0,
"minchan" : 4,
"maxgap" : 3,
"segment" : "ADMIT",
"smooth" : [],
"recalcnoise" : False,
"csub" : [1, None],
"iterate" : True,
}
self.boxcar = True
AT.__init__(self, keys, keyval)
self._version = "1.0.3"
self.set_bdp_in([(CubeSpectrum_BDP, 1, bt.OPTIONAL),
(CubeStats_BDP, 1, bt.OPTIONAL)])
self.set_bdp_out([(LineSegment_BDP, 1)])
def __init__(self, **keyval):
keys = {
"moments" : [0], # default to moment 0
"numsigma" : [2.0], # default to 2 sigma
"sigma" : -1.0, # default to determine sigma internally
"chans" : "", # default to select all channels
"mom0clip" : 0.0, # default to not clip
"variflow" : False, # default to manual sub-flow management
}
AT.__init__(self, keys, keyval)
self._version = "1.0.3"
# set input types
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(CubeStats_BDP, 1, bt.OPTIONAL)])
# set output types
self.set_bdp_out([(Moment_BDP, 0)])
def __init__(self,**keyval):
keys = {"file" : "",
"nchan" : 1000,
"nspectra" : 1,
"seed" : 0, # -1 is special for no noise
"contin" : 0.0,
"freq" : 115.2712018,
"delta" : 0.5, # channel width in MHz
"lines" : [], # [(snr,freq0,fwhm),...]
"transitions" : [],
"hanning" : False,
}
AT.__init__(self,keys,keyval)
self._version = "1.0.0"
self.set_bdp_in([])
self.set_bdp_out([(CubeSpectrum_BDP,1)])
self.spec_description = [] # for summary()
def __init__(self, **keyval):
keys = {
"pos": [], # one or more pairs of int's or ra/dec strings
"sources": [0], # select which sources from a SourceList
"xaxis": "", # currently still ignored
}
AT.__init__(self, keys, keyval)
self._version = "1.0.3"
self.set_bdp_in([
(Image_BDP, 1,
bt.REQUIRED), # 0: cube: SpwCube or LineCube allowed
(CubeStats_BDP, 1, bt.OPTIONAL), # 1: stats, uses maxpos
(Moment_BDP, 1,
bt.OPTIONAL), # 2: map, uses the max in this image as pos=
(SourceList_BDP, 1, bt.OPTIONAL)
]) # 3: source list, for positions
self.set_bdp_out([(CubeSpectrum_BDP, 1)])
def __init__(self, **keyval):
keys = {
"file": "",
"nchan": 1000,
"nspectra": 1,
"seed": 0, # -1 is special for no noise
"contin": 0.0,
"freq": 115.2712018,
"delta": 0.5, # channel width in MHz
"lines": [], # [(snr,freq0,fwhm),...]
"transitions": [],
"hanning": False,
}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
self.set_bdp_in([])
self.set_bdp_out([(CubeSpectrum_BDP, 1)])
self.spec_description = [] # for summary()
def __init__(self, **keyval):
keys = {
"contsub": [], # list of tuples
"pad": 5, # see also LineCube_AT
"fitorder": 0, # polynomial order
}
AT.__init__(self, keys, keyval)
self._version = "1.1.0"
self.set_bdp_in([
(SpwCube_BDP, 1, bt.REQUIRED), # input spw cube
(LineList_BDP, 1, bt.OPTIONAL), # will catch SegmentList as well
])
self.set_bdp_out(
[
(SpwCube_BDP, 1), # output line cube (.lim)
(Image_BDP, 1)
], # output cont map (.cim)
)
def __init__(self, **keyval):
keys = {
"numsigma": 2.0, # default to 2.0*sigma cutoff
"sigma": -1.0, # default to CubeStats rms(freq)
"linesum":
True, # Select line segments for from the (optional) LineList
"pad":
5, # number of channels to pad onto the line segments from LineList
"zoom": 1, # default map plot zoom ratio
# "cont" : True, # force averaging to make it a continuum @todo
}
AT.__init__(self, keys, keyval)
self._version = "1.1.0-issue34"
self.set_bdp_in([(Image_BDP, 1, bt.REQUIRED),
(CubeStats_BDP, 1, bt.OPTIONAL),
(LineList_BDP, 1, bt.OPTIONAL)
]) # LineSegment_BDP also allowed
self.set_bdp_out([(Moment_BDP, 1)])
def __init__(self, **keyval):
keys = {
"bmaj": {
'value': -1.0,
'unit': 'arcsec'
},
"bmin": {
'value': -1.0,
'unit': 'arcsec'
},
"bpa": -1.0,
"velres": {
'value': -1.0,
'unit': 'pixel'
},
}
AT.__init__(self, keys, keyval)
self._version = "1.0.5"
self.set_bdp_in([(SpwCube_BDP, 0, bt.REQUIRED)])
self.set_bdp_out([(SpwCube_BDP, 0)])
def __init__(self,**keyval):
keys = {
'file' : "", # fitsfile cube or map (or casa/miriad)
'basename': "", # override basename (useful for shorter names)
'pb' : "", # PB cube or map
'usepb' : True, # use PB, or was it just given for downstream
'mask' : True, # define a mask where data==0.0 if no mask present
'box' : [], # [] or z1,z2 or x1,y1,x2,y2 or x1,y1,z1,x2,y2,z2
'edge' : [], # [] or zl,zr - number of edge channels
'smooth' : [], # pixel smoothing size applied to data (can be slow) - see also Smooth_AT
'vlsr' : -999999.0, # force a VLSR (see also LineID)
'restfreq': -1.0, # alternate VLSRf specification
# 'symlink' : False, #
# 'autobox' : False, # automatically cut away spatial and spectral slices that are masked
# 'cbeam' : 0.5, # channel beam variation allowed in terms of pixel size to use median beam
}
AT.__init__(self,keys,keyval)
self._version = "1.0.8a"
self.set_bdp_in() # no input BDP
self.set_bdp_out([(SpwCube_BDP, 1), # one or two output BDPs
(Image_BDP, 1), # optional PB if there was an input
])
def __init__(self, **keyval):
keys = {"file": ""}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
self.set_bdp_in()
self.set_bdp_out([(BDP, 1)])
def __init__(self):
AT.__init__(self)
def __init__(self, **keyval):
keys = {"file": "", "exist": True, "touch": False}
AT.__init__(self, keys, keyval)
self._version = "1.0.0"
self.set_bdp_in()
self.set_bdp_out([(File_BDP, 1)])
def __init__(self):
AT.__init__(self)
self.valid_BDP = [] # the listing of valid input BDP types
self.bdp_out_types = [] # the listing of output bdp types
"""
def __init__(self):
AT.__init__(self)
def __init__(self):
AT.__init__(self)
self.valid_BDP = [] # the listing of valid input BDP types
self.bdp_out_types = [] # the listing of output bdp types
"""
