def post(self):
# see if we're coming from an edit
human_survey_id = self.get_argument('survey_id', None)
page_number = int(self.get_argument('page_number'))
if human_survey_id is None:
# we came from consent
human_survey_id = self.get_secure_cookie('human_survey_id')
if human_survey_id is None:
err_msg = url_escape("There was an unexpected error.")
self.redirect(media_locale['SITEBASE'] + "/authed/portal/?errmsg=%s" % err_msg)
return
else:
# we came from participant_overview
consent = ag_data.getConsent(human_survey_id)
self.set_secure_cookie('human_survey_id', human_survey_id)
data = primary_human_survey.fetch_survey(human_survey_id)
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.hset(human_survey_id, 'existing', dumps(data))
redis.expire(human_survey_id, 86400)
next_page_number = page_number + 1
if page_number >= 0:
form_data = surveys[page_number]()
form_data.process(data=self.request.arguments)
data = {'questions': form_data.data}
redis.hset(human_survey_id, page_number, dumps(data))
progress = int(100.0*(page_number+2)/(len(primary_human_survey.groups) + 1))
# if this is not the last page, render the next page
if next_page_number < len(surveys):
the_form = surveys[next_page_number]()
existing_responses = redis.hget(human_survey_id, 'existing')
if existing_responses:
existing_responses = loads(existing_responses)
the_form = surveys[next_page_number](data=existing_responses)
title = primary_human_survey.groups[next_page_number].name
self.render('human_survey.html', the_form=the_form,
skid=self.current_user, TITLE=title,
page_number=next_page_number,
progress=progress)
else:
# only get the cookie if you complete the survey
self.clear_cookie('human_survey_id')
self.set_secure_cookie('completed_survey_id', human_survey_id)
store_survey(primary_human_survey, human_survey_id)
self.redirect(media_locale['SITEBASE'] +
'/authed/human_survey_completed/')
def get(self):
human_survey_id = self.get_secure_cookie('completed_survey_id')
if human_survey_id is None:
self.clear_cookie('completed_survey_id')
self.redirect(media_locale['SITEBASE'] + '/authed/portal/')
else:
consent_info = ag_data.getConsent(human_survey_id)
surveys = [f(human_survey_id, consent_info)
for f in external_surveys]
self.render('human_survey_completed.html', skid=self.current_user,
surveys=surveys)
def get(self):
human_survey_id = self.get_secure_cookie('completed_survey_id')
if human_survey_id is None:
self.clear_cookie('completed_survey_id')
self.redirect(media_locale['SITEBASE'] + '/authed/portal/')
else:
consent_info = ag_data.getConsent(human_survey_id)
surveys = [
f(human_survey_id, consent_info) for f in external_surveys
]
self.render('human_survey_completed.html',
skid=self.current_user,
surveys=surveys)
def test_store_survey_edit(self):
survey, survey_id, notes_test, consent = self.insert_data()
obs = survey.fetch_survey(survey_id)
exp = {
'Pet_Information_127_0': 'Fluffy',
'Pet_Information_137_0': [0],
'Pet_Information_143_0': 'Capybara',
'Pet_Information_132_0': 2,
'Pet_Information_138_0': 1,
'Pet_Information_144_0': notes_test,
'Pet_Information_129_0': 4,
'Pet_Information_142_0': 'Giant ratty pet!',
'Pet_Information_133_0': 3,
'Pet_Information_139_0': 5,
'Pet_Information_130_0': '20',
'Pet_Information_128_0': 9,
'Pet_Information_134_0': 2,
'Pet_Information_140_0': 0,
'Pet_Information_131_0': 1,
'Pet_Information_145_0': '29 - Male',
'Pet_Information_136_0': 3,
'Pet_Information_135_0': [3],
'Pet_Information_141_0': 4
}
self.assertEqual(obs, exp)
obs = ag_data.getConsent(survey_id)
# change datatypes as postgres does:
consent['deceased_parent'] = 'false' \
if consent['deceased_parent'] is False else 'true'
consent['ag_login_id'] = consent['login_id']
del consent['login_id']
del consent['obtainer_name']
del consent['parent_1_name']
del consent['parent_2_name']
del consent['participant_name']
del obs['date_signed']
del obs['parent_1_name']
del obs['parent_2_name']
del obs['participant_name']
self.assertEqual(obs, consent)
self.delete_survey(survey_id)
def test_store_survey_edit(self):
survey, survey_id, notes_test, consent = self.insert_data()
obs = survey.fetch_survey(survey_id)
exp = {'Pet_Information_127_0': 'Fluffy',
'Pet_Information_137_0': [0],
'Pet_Information_143_0': 'Capybara',
'Pet_Information_132_0': 2,
'Pet_Information_138_0': 1,
'Pet_Information_144_0': notes_test,
'Pet_Information_129_0': 4,
'Pet_Information_142_0': 'Giant ratty pet!',
'Pet_Information_133_0': 3,
'Pet_Information_139_0': 5,
'Pet_Information_130_0': '20',
'Pet_Information_128_0': 9,
'Pet_Information_134_0': 2,
'Pet_Information_140_0': 0,
'Pet_Information_131_0': 1,
'Pet_Information_145_0': '29 - Male',
'Pet_Information_136_0': 3,
'Pet_Information_135_0': [3],
'Pet_Information_141_0': 4}
self.assertEqual(obs, exp)
obs = ag_data.getConsent(survey_id)
# change datatypes as postgres does:
consent['deceased_parent'] = 'false' \
if consent['deceased_parent'] is False else 'true'
consent['ag_login_id'] = consent['login_id']
del consent['login_id']
del consent['obtainer_name']
del consent['parent_1_name']
del consent['parent_2_name']
del consent['participant_name']
del obs['date_signed']
del obs['parent_1_name']
del obs['parent_2_name']
del obs['participant_name']
self.assertEqual(obs, consent)
self.delete_survey(survey_id)
def post(self):
# see if we're coming from an edit
human_survey_id = self.get_argument('survey_id', None)
page_number = int(self.get_argument('page_number'))
sitebase = media_locale['SITEBASE']
if human_survey_id is None:
# we came from consent
human_survey_id = self.get_secure_cookie('human_survey_id')
if human_survey_id is None:
err_msg = url_escape("There was an unexpected error.")
self.redirect(sitebase + "/authed/portal/?errmsg=%s" % err_msg)
return
else:
# we came from participant_overview
consent = ag_data.getConsent(human_survey_id)
# make sure is string so can be serialized
consent['date_signed'] = str(consent['date_signed'])
self.set_secure_cookie('human_survey_id', human_survey_id)
data = primary_human_survey.fetch_survey(human_survey_id)
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.hset(human_survey_id, 'existing', dumps(data))
redis.expire(human_survey_id, 86400)
next_page_number = page_number + 1
if page_number >= 0:
form_data = surveys[page_number]()
form_data.process(data=self.request.arguments)
data = {'questions': form_data.data}
redis.hset(human_survey_id, page_number, dumps(data))
progress = int(100.0 * (page_number + 2) / (len(phs_groups) + 1))
# if this is not the last page, render the next page
if next_page_number < len(surveys):
the_form = surveys[next_page_number]()
existing_responses = redis.hget(human_survey_id, 'existing')
if existing_responses:
existing_responses = loads(existing_responses)
the_form = surveys[next_page_number](data=existing_responses)
title = phs_groups[next_page_number].name
self.render('human_survey.html', the_form=the_form,
skid=self.current_user, TITLE=title,
page_number=next_page_number,
progress=progress)
else:
# only get the cookie if you complete the survey
self.clear_cookie('human_survey_id')
self.set_secure_cookie('completed_survey_id', human_survey_id)
store_survey(primary_human_survey, human_survey_id)
existing = redis.hget(human_survey_id, 'existing')
if existing is None:
# Send consent info email since new participant
consent_info = ag_data.getConsent(human_survey_id)
try:
message = build_consent_form(consent_info)
send_email(message, 'American Gut-Signed Consent Form(s)',
recipient=consent_info['participant_email'],
sender='*****@*****.**', html=True)
except:
logging.exception('Error sending signed consent form for '
'survey ID: %s to email: %s' %
(human_survey_id,
consent_info['participant_email']))
self.redirect(sitebase + '/authed/human_survey_completed/')
def test_store_survey(self):
# Create new survey ID and make sure it is unused
survey = Survey(2)
c = ascii_letters + '1234567890'
survey_id = ''.join([choice(c) for i in range(16)])
name = ''.join([choice(ascii_letters) for i in range(20)])
with self.assertRaises(ValueError):
survey.fetch_survey(survey_id)
consent = {
'login_id': 'd8592c74-84b1-2135-e040-8a80115d6401',
'survey_id': survey_id,
'participant_name': name,
'age_range': 'ANIMAL_SURVEY',
'parent_1_name': 'ANIMAL_SURVEY',
'parent_2_name': 'ANIMAL_SURVEY',
'deceased_parent': False,
'participant_email': 'REMOVED',
'obtainer_name': 'ANIMAL_SURVEY',
'assent_obtainer': 'ANIMAL_SURVEY',
'is_juvenile': True
}
with_fk = [(survey_id, 128, 'Other'), (survey_id, 129, 'Wild'),
(survey_id, 131, 'Male'), (survey_id, 132, 'Suburban'),
(survey_id, 133, 'Normal'), (survey_id, 134, 'Omnivore'),
(survey_id, 135, 'Wild food'), (survey_id, 136, 'Both'),
(survey_id, 137, 'Unspecified'),
(survey_id, 138, 'Lives alone with humans'),
(survey_id, 139, '8+'), (survey_id, 140, 'Unspecified'),
(survey_id, 141, 'Never')]
without_fk = [(survey_id, 130, '["20"]'),
(survey_id, 142, unicode('["Mötley Crüe!"]', 'utf-8')),
(survey_id, 143, '["Capybara"]'),
(survey_id, 144, '[""]'),
(survey_id, 145, '["29 - Male"]'),
(survey_id, 127, '["%s"]' % name)]
survey.store_survey(consent, with_fk, without_fk)
obs = survey.fetch_survey(survey_id)
exp = {
'Pet_Information_127_0': name,
'Pet_Information_137_0': [0],
'Pet_Information_143_0': 'Capybara',
'Pet_Information_132_0': 2,
'Pet_Information_138_0': 1,
'Pet_Information_144_0': '',
'Pet_Information_129_0': 4,
'Pet_Information_142_0': u'M\xf6tley Cr\xfce!'.encode('utf-8'),
'Pet_Information_133_0': 3,
'Pet_Information_139_0': 5,
'Pet_Information_130_0': '20',
'Pet_Information_128_0': 9,
'Pet_Information_134_0': 2,
'Pet_Information_140_0': 0,
'Pet_Information_131_0': 1,
'Pet_Information_145_0': '29 - Male',
'Pet_Information_136_0': 3,
'Pet_Information_135_0': [3],
'Pet_Information_141_0': 4
}
self.assertEqual(obs, exp)
obs = ag_data.getConsent(survey_id)
del obs['date_signed']
consent['ag_login_id'] = consent['login_id']
del consent['login_id']
del consent['obtainer_name']
consent['deceased_parent'] = 'false'
self.assertEqual(obs, consent)
# revert database
self.delete_survey(survey_id)
def test_store_survey_edit(self):
# Create random string to test update happens
c = ascii_letters + '1234567890'
notes_test = ''.join([choice(c) for i in range(40)])
# Set up survey
survey_id = '817ff95701f4dd10'
survey = Survey(2)
consent = {
'login_id': 'eba20873-b7db-33cc-e040-8a80115d392c',
'survey_id': survey_id,
'participant_name': 'some name that should be ignored',
'age_range': 'ANIMAL_SURVEY',
'parent_1_name': 'ANIMAL_SURVEY',
'parent_2_name': 'ANIMAL_SURVEY',
'deceased_parent': False,
'participant_email': 'REMOVED',
'obtainer_name': 'ANIMAL_SURVEY',
'assent_obtainer': 'ANIMAL_SURVEY',
'is_juvenile': True}
with_fk = [(survey_id, 128, 'Other'),
(survey_id, 129, 'Wild'),
(survey_id, 131, 'Male'),
(survey_id, 132, 'Suburban'),
(survey_id, 133, 'Normal'),
(survey_id, 134, 'Omnivore'),
(survey_id, 135, 'Wild food'),
(survey_id, 136, 'Both'),
(survey_id, 137, 'Unspecified'),
(survey_id, 138, 'Lives alone with humans'),
(survey_id, 139, '8+'),
(survey_id, 140, 'Unspecified'),
(survey_id, 141, 'Never')]
without_fk = [(survey_id, 130, '["20"]'),
(survey_id, 142, '["Giant ratty pet!"]'),
(survey_id, 143, '["Capybara"]'),
(survey_id, 144, '["%s"]' % notes_test),
(survey_id, 145, '["29 - Male"]'),
(survey_id, 127, '["Fluffy"]')]
survey.store_survey(consent, with_fk, without_fk)
obs = survey.fetch_survey(survey_id)
exp = {'Pet_Information_127_0': 'Fluffy',
'Pet_Information_137_0': [0],
'Pet_Information_143_0': 'Capybara',
'Pet_Information_132_0': 2,
'Pet_Information_138_0': 1,
'Pet_Information_144_0': notes_test,
'Pet_Information_129_0': 4,
'Pet_Information_142_0': 'Giant ratty pet!',
'Pet_Information_133_0': 3,
'Pet_Information_139_0': 5,
'Pet_Information_130_0': '20',
'Pet_Information_128_0': 9,
'Pet_Information_134_0': 2,
'Pet_Information_140_0': 0,
'Pet_Information_131_0': 1,
'Pet_Information_145_0': '29 - Male',
'Pet_Information_136_0': 3,
'Pet_Information_135_0': [3],
'Pet_Information_141_0': 4}
self.assertEqual(obs, exp)
obs = ag_data.getConsent(survey_id)
consent['ag_login_id'] = consent['login_id']
del consent['login_id']
del consent['obtainer_name']
consent['deceased_parent'] = 'false'
consent['date_signed'] = date(2015, 9, 27)
consent['parent_1_name'] = 'REMOVED'
consent['parent_2_name'] = 'REMOVED'
consent['participant_name'] = 'REMOVED-0'
consent['parent_1_name'] = 'REMOVED'
self.assertEqual(obs, consent)
def test_store_survey(self):
# Create new survey ID and make sure it is unused
survey = Survey(2)
c = ascii_letters + '1234567890'
survey_id = ''.join([choice(c) for i in range(16)])
name = ''.join([choice(ascii_letters) for i in range(20)])
with self.assertRaises(ValueError):
survey.fetch_survey(survey_id)
consent = {
'login_id': 'd8592c74-84b1-2135-e040-8a80115d6401',
'survey_id': survey_id,
'participant_name': name,
'age_range': 'ANIMAL_SURVEY',
'parent_1_name': 'ANIMAL_SURVEY',
'parent_2_name': 'ANIMAL_SURVEY',
'deceased_parent': False,
'participant_email': 'REMOVED',
'obtainer_name': 'ANIMAL_SURVEY',
'assent_obtainer': 'ANIMAL_SURVEY',
'is_juvenile': True}
with_fk = [(survey_id, 128, 'Other'),
(survey_id, 129, 'Wild'),
(survey_id, 131, 'Male'),
(survey_id, 132, 'Suburban'),
(survey_id, 133, 'Normal'),
(survey_id, 134, 'Omnivore'),
(survey_id, 135, 'Wild food'),
(survey_id, 136, 'Both'),
(survey_id, 137, 'Unspecified'),
(survey_id, 138, 'Lives alone with humans'),
(survey_id, 139, '8+'),
(survey_id, 140, 'Unspecified'),
(survey_id, 141, 'Never')]
without_fk = [(survey_id, 130, '["20"]'),
(survey_id, 142, unicode('["Mötley Crüe!"]', 'utf-8')),
(survey_id, 143, '["Capybara"]'),
(survey_id, 144, '[""]'),
(survey_id, 145, '["29 - Male"]'),
(survey_id, 127, '["%s"]' % name)]
survey.store_survey(consent, with_fk, without_fk)
obs = survey.fetch_survey(survey_id)
exp = {'Pet_Information_127_0': name,
'Pet_Information_137_0': [0],
'Pet_Information_143_0': 'Capybara',
'Pet_Information_132_0': 2,
'Pet_Information_138_0': 1,
'Pet_Information_144_0': '',
'Pet_Information_129_0': 4,
'Pet_Information_142_0': u'M\xf6tley Cr\xfce!'.encode('utf-8'),
'Pet_Information_133_0': 3,
'Pet_Information_139_0': 5,
'Pet_Information_130_0': '20',
'Pet_Information_128_0': 9,
'Pet_Information_134_0': 2,
'Pet_Information_140_0': 0,
'Pet_Information_131_0': 1,
'Pet_Information_145_0': '29 - Male',
'Pet_Information_136_0': 3,
'Pet_Information_135_0': [3],
'Pet_Information_141_0': 4}
self.assertEqual(obs, exp)
obs = ag_data.getConsent(survey_id)
del obs['date_signed']
consent['ag_login_id'] = consent['login_id']
del consent['login_id']
del consent['obtainer_name']
consent['deceased_parent'] = 'false'
self.assertEqual(obs, consent)
def post(self):
# see if we're coming from an edit
human_survey_id = self.get_argument('survey_id', None)
page_number = int(self.get_argument('page_number'))
sitebase = media_locale['SITEBASE']
if human_survey_id is None:
# we came from consent
human_survey_id = self.get_secure_cookie('human_survey_id')
if human_survey_id is None:
err_msg = url_escape("There was an unexpected error.")
self.redirect(sitebase + "/authed/portal/?errmsg=%s" % err_msg)
return
else:
# we came from participant_overview
consent = ag_data.getConsent(human_survey_id)
# make sure is string so can be serialized
consent['date_signed'] = str(consent['date_signed'])
self.set_secure_cookie('human_survey_id', human_survey_id)
data = primary_human_survey.fetch_survey(human_survey_id)
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.hset(human_survey_id, 'existing', dumps(data))
redis.expire(human_survey_id, 86400)
next_page_number = page_number + 1
if page_number >= 0:
form_data = surveys[page_number]()
form_data.process(data=self.request.arguments)
data = {'questions': form_data.data}
redis.hset(human_survey_id, page_number, dumps(data))
progress = int(100.0 * (page_number + 2) / (len(phs_groups) + 1))
# if this is not the last page, render the next page
if next_page_number < len(surveys):
the_form = surveys[next_page_number]()
existing_responses = redis.hget(human_survey_id, 'existing')
if existing_responses:
existing_responses = loads(existing_responses)
the_form = surveys[next_page_number](data=existing_responses)
title = phs_groups[next_page_number].name
self.render('human_survey.html',
the_form=the_form,
skid=self.current_user,
TITLE=title,
page_number=next_page_number,
progress=progress)
else:
# only get the cookie if you complete the survey
self.clear_cookie('human_survey_id')
self.set_secure_cookie('completed_survey_id', human_survey_id)
store_survey(primary_human_survey, human_survey_id)
existing = redis.hget(human_survey_id, 'existing')
if existing is None:
# Send consent info email since new participant
consent_info = ag_data.getConsent(human_survey_id)
try:
message = build_consent_form(consent_info)
send_email(message,
'American Gut-Signed Consent Form(s)',
recipient=consent_info['participant_email'],
sender='*****@*****.**',
html=True)
except:
logging.exception(
'Error sending signed consent form for '
'survey ID: %s to email: %s' %
(human_survey_id, consent_info['participant_email']))
self.redirect(sitebase + '/authed/human_survey_completed/')
