def process_samples_information_file(self, samples_information_path):
if not samples_information_path:
return
self.sample_names_in_samples_information_file = filesnpaths.is_proper_samples_information_file(samples_information_path)
self.samples_information_dict, self.aliases_to_attributes_dict = self.convert_samples_information_dict(utils.get_TAB_delimited_file_as_dictionary(samples_information_path))
self.run.info('Samples information', 'Loaded for %d samples' % len(self.samples_information_dict))
def process_samples_information_file(self, samples_information_path):
if not samples_information_path:
return
self.sample_names_in_samples_information_file = filesnpaths.is_proper_samples_information_file(samples_information_path)
self.samples_information_dict, self.aliases_to_attributes_dict = self.convert_samples_information_dict(utils.get_TAB_delimited_file_as_dictionary(samples_information_path))
self.samples_information_default_layer_order = open(samples_information_path, 'rU').readline().strip().split('\t')[1:]
self.run.info('Samples information', 'Loaded for %d samples' % len(self.samples_information_dict))
def process_samples_information_file(self, samples_information_path):
if not samples_information_path:
return
self.sample_names_in_samples_information_file = filesnpaths.is_proper_samples_information_file(samples_information_path)
self.samples_information_dict, self.aliases_to_attributes_dict = self.convert_samples_information_dict(utils.get_TAB_delimited_file_as_dictionary(samples_information_path))
self.samples_information_default_layer_order = open(samples_information_path, 'rU').readline().strip().split('\t')[1:]
self.run.info('Samples information', 'Loaded for %d samples' % len(self.samples_information_dict), quiet = self.quiet)
def process_samples_information_file(self, samples_information_path):
if not samples_information_path:
return
self.sample_names_in_samples_information_file = filesnpaths.is_proper_samples_information_file(
samples_information_path)
self.samples_information_dict, self.aliases_to_attributes_dict = self.convert_samples_information_dict(
utils.get_TAB_delimited_file_as_dictionary(
samples_information_path))
self.run.info(
'Samples information',
'Loaded for %d samples' % len(self.samples_information_dict))
