def get_childs(query_term="radiological finding"):
tree = None
s = {}
path = root + '/Rx-thorax-automatic-captioning/' + filetree
stream = open(path, "r")
docs = yaml.load_all(stream, Loader=yaml.FullLoader)
print("Starting to search " + query_term + " in the following trees:")
for doc in docs:
tree_root = DictImporter().import_(doc)
print("\t" + tree_root.label)
r = search.findall(tree_root, lambda node: node.label == query_term)
if r:
tree = RenderTree(r[0])
for pre, _, node in tree:
CUI = None
try:
CUI = node.concept
m = re.search('\((\w+)\)', CUI)
if m:
CUI = m.group(0).strip('(').strip(')')
cui.add(CUI)
except:
pass
s[node.label] = CUI
if tree:
t = str(tree.by_attr(lambda n: n.label + '\n'))
st.sidebar.markdown("## Tree of child terms")
st.sidebar.markdown(t)
return s, t
if __name__ == '__main__':
comp = field.CompositeField('TheComp')
inta = field.IntField('a', 10, comp)
intb = field.IntField('b', 20, comp)
boolc = field.BoolField('c', True, comp)
boold = field.BoolField('d', False, comp)
floate = field.FloatField('e', 3.14, comp)
compchild = field.CompositeField('ChildComp', None, comp)
folder = field.FolderField('fo', '', compchild)
file = field.FileField('fi', '', compchild)
strg = field.StringField('g', 'abc', compchild)
comboh = field.ComboboxField('h', 'T1', ['T1', 'T2', 'BOLD', 'DWI'], comp)
renderer = RenderTree(comp)
print(renderer)
print(renderer.by_attr('value'))
exporter = DictExporter(dictcls=OrderedDict)
print(exporter.export(comp))
exporterj = JsonExporter()
jstr = exporterj.export(comp)
## d = json.loads(jstr)
## importer = field.FieldImporter()
## comp2 = importer.import_(d)
## print(RenderTree(comp2))
print('=====')
d = field.dump(comp)