def discover_new_runs(denied_runs, conf):
"""Discover new runs.
Arguments:
conf: configuration object
"""
#
# Discover new run
#
run_already_discovered = load_processed_run_ids(conf)
if common.is_conf_value_equals_true(FIRST_BASE_REPORT_STEP_KEY, conf):
for run_id in (get_available_new_run_ids(conf) - run_already_discovered - denied_runs):
aozan.welcome(conf)
common.log('INFO',
'First base report ' + run_id + ' on sequencer ' + common.get_instrument_name(run_id, conf),
conf)
if send_report(run_id, conf):
add_run_id_to_processed_run_ids(run_id, conf)
run_already_discovered.add(run_id)
# Verify space needed during the first base report
estimate_space_needed.estimate(run_id, conf)
def discover_finished_runs(denied_runs, conf):
"""Discover new ended runs
Arguments:
conf: configuration object
"""
run_ids_done = load_processed_run_ids(conf)
if common.is_conf_value_equals_true(HISEQ_STEP_KEY, conf):
for run_id in (get_available_finished_run_ids(conf) - run_ids_done - denied_runs):
if run_id is None or len(run_id) == 0:
# No run id found
return []
aozan.welcome(conf)
common.log('INFO', 'Ending run detection ' + str(run_id) + ' on ' + common.get_instrument_name(run_id, conf),
conf)
if hiseq_run.get_read_count(run_id, conf) == 0:
send_failed_run_message(run_id, common.MAX_DELAY_TO_SEND_TERMINATED_RUN_EMAIL, conf)
add_run_id_to_denied_run_ids(run_id, conf)
create_run_summary_reports(run_id, conf)
else:
if create_run_summary_reports(run_id, conf):
send_mail_if_recent_run(run_id, common.MAX_DELAY_TO_SEND_TERMINATED_RUN_EMAIL, conf)
add_run_id_to_processed_run_ids(run_id, conf)
run_ids_done.add(run_id)
return run_ids_done