def submit_apbs_json():
"""
Handles APBS job submissions.
Runs the APBS main function originally from 'apbs_cgi.py'.
"""
json_response = None
http_status_response = None
if request.method == 'POST':
form = loads(request.data)['form']
for key in form.keys():
if key == 'output_scalar':
for option in form[key]:
form[option] = option
form.pop('output_scalar')
else:
form[key] = str(form[key])
# form[key] = unicode(form[key])
# print('\n\n')
print(pp.pformat(form, indent=4, width=10))
# print('\n\n')
# print(pp.pformat(request.form.to_dict(), indent=4, width=10))
# redirectURL = apbs_cgi.mainInput(request.form)
# redirectURL = apbs_cgi.mainInput(loads(request.data))
redirectURL = apbs_cgi.mainInput(form, STORAGE_HOST)
'''=== DEBUG LINE FOR DEV: REMOVE IN FINAL ==='''
# if 'http://localhost:5000' in redirectURL:
# print(redirectURL)
# redirectURL = redirectURL.replace('http://localhost:5000', 'http://localhost:3000')
# print(redirectURL)
'''==========================================='''
# return redirect(redirectURL)
response = make_response(JSONEncoder().encode({'status': 'success'}))
http_status_code = 202
elif request.method == 'OPTIONS':
response = make_response(JSONEncoder().encode(json_response))
response = jobutils.get_request_options(response, 'POST')
response.headers[
'Access-Control-Allow-Headers'] = 'x-requested-with,content-type'
http_status_code = 204
response.headers['Content-Type'] = 'application/json'
if request.referrer:
# Add origin header to response if origin is in whitelist
request_origin_url = request.referrer.split('?')[0]
if request_origin_url in ORIGIN_WHITELIST:
cleared_domain = request_origin_url[:request_origin_url.
index('/apbs')]
response.headers['Access-Control-Allow-Origin'] = cleared_domain
return response, http_status_code
def submit_apbs():
"""
Handles APBS job submissions.
Runs the APBS main function originally from 'apbs_cgi.py'.
"""
if request.method == 'POST':
print(pp.pformat(request.form.to_dict(), indent=4, width=10))
# return str(request.form)
# return str(request.form['removewater'])
redirectURL = apbs_cgi.mainInput(request.form)
'''=== DEBUG LINE FOR DEV: REMOVE IN FINAL ==='''
if 'http://localhost:5000' in redirectURL:
print(redirectURL)
redirectURL = redirectURL.replace('http://localhost:5000',
'http://localhost:3000')
print(redirectURL)
'''==========================================='''
return redirect(redirectURL)
def jobstatus():
"""
GET takes the user directly to the status page
A query string in the URL is how the status page is rendered
"""
if request.method == 'POST':
# f = request.files['PDB']
# print("f is of type: "+str(type(f)))
# print(f['PDB'])
# filename = secure_filename(f.filename)
# print('filename: ' + filename)
job_type = request.args['submitType']
# print(job_type)
# print(request.args)
if job_type == 'pdb2pqr':
redirectURL = main_cgi.mainCGI(request.form, request.files)
elif job_type == 'apbs':
print(pp.pformat(request.form.to_dict(), indent=4, width=10))
# return pp.pformat(request.form.to_dict(), indent=4, width=10)
# return str(request.form)
# return str(request.form['removewater'])
redirectURL = apbs_cgi.mainInput(request.form)
pass
'''=== DEBUG LINE FOR DEV: REMOVE IN FINAL ==='''
if ':5000' in redirectURL:
print(redirectURL)
redirectURL = redirectURL.replace(':5000', ':3000')
print(redirectURL)
'''==========================================='''
return redirect(redirectURL)
elif request.method == 'GET':
return render_template("index.html")