def __init__(self, params: Dict[str, Any]):
overall_params = {
"xqtl_mode": params["xqtl_mode"],
"exposure_gene": params["exposure_gene"],
"outcome_trait": params["outcome_trait"],
"variant": params["variant"],
"mr_method": params["mr_method"],
"qtl_type": params["qtl_type"],
"pval_threshold": params["pval_threshold"],
}
if overall_params["xqtl_mode"] == "multi_snp_mr":
input_params = {
"exposure_gene": params["exposure_gene"],
"outcome_trait": params["outcome_trait"],
"mr_method": params["mr_method"],
"qtl_type": params["qtl_type"],
"pval_threshold": params["pval_threshold"],
}
super().__init__(
master_name=multi_snp_master_name,
params=input_params,
table_col_configs=multi_snp_mr_table_col_configs,
network_plot_schema=NetworkPlotSchemaInput(
node_schemas=node_schemas_multi_snp,
edge_schemas=edge_schemas_multi_snp,
),
cypher_diagram_fn=cypher_diagram,
api_endpoint=multi_snp_api_endpoint,
cypher_diagram_params=overall_params,
)
else:
input_params = {
"exposure_gene": params["exposure_gene"],
"outcome_trait": params["outcome_trait"],
"variant": params["variant"],
"qtl_type": params["qtl_type"],
"pval_threshold": params["pval_threshold"],
}
super().__init__(
master_name=single_snp_master_name,
params=input_params,
table_col_configs=single_snp_mr_table_col_configs,
network_plot_schema=NetworkPlotSchemaInput(
node_schemas=node_schemas_single_snp,
edge_schemas=edge_schemas_single_snp,
),
cypher_diagram_fn=cypher_diagram,
api_endpoint=single_snp_api_endpoint,
cypher_diagram_params=overall_params,
)
def __init__(self, params: Dict[str, Any]):
super().__init__(
master_name=master_name,
params=params,
table_col_configs=table_col_configs,
network_plot_schema=NetworkPlotSchemaInput(
node_schemas=node_schemas, edge_schemas=edge_schemas),
cypher_diagram_fn=cypher_diagram,
)
def __init__(self, params: Dict[str, Any], type: str = "confounder"):
super().__init__(
master_name=master_name,
params=params,
table_col_configs=table_col_configs,
network_plot_schema=NetworkPlotSchemaInput(
node_schemas=node_schemas,
edge_schemas=create_edge_schemas(type=type),
),
cypher_diagram_fn=cypher_diagram,
)