def send_wait_serial(data):
app.logger.info(f'Sending {data} to PLC')
if app.use_flask_serial:
plc_ser.on_send(data + '\r\n')
else:
plc_ser.send_data(data)
socketio.start_background_task(wait_for_start)
def on_background_start(self, data):
_id = session['socket_id']
try:
if running_process[_id] is False:
running_process[_id] = True
socketio.start_background_task(background_thread, _id, data)
except KeyError:
running_process[_id] = True
socketio.start_background_task(background_thread, _id, data)
emit('connection_response', {
'data': 'Connected',
'id': session['socket_id']
})
def create_game(self, game_id, score_max_distance, max_response_time, leaderboard_answer_count,
between_turns_duration):
app.logger.debug('Starting a new game with the id {game_id}'.format(game_id=game_id))
# Create the game
game = Game(game_id, score_max_distance, max_response_time, leaderboard_answer_count, between_turns_duration)
# Register it
self.games.append(game)
# Start the game
socketio.start_background_task(target=self.run_game, game=game)
return game
def create_game(self, game_id, score_max_distance, max_response_time, leaderboard_answer_count,
between_turns_duration):
app.logger.debug('Starting a new game with the id {game_id}'.format(game_id=game_id))
# Create the game
game = Game(game_id, score_max_distance, max_response_time, leaderboard_answer_count, between_turns_duration)
# Register it
self.games.append(game)
# Start the game
socketio.start_background_task(target=self.run_game, game=game)
return game
def test_connect():
app.data.console_queue.put("connected")
app.data.console_queue.put(request.sid)
if app.uithread == None:
app.uithread = socketio.start_background_task(
app.UIProcessor.start, current_app._get_current_object())
app.uithread.start()
if not app.data.connectionStatus:
app.data.console_queue.put(
"Attempting to re-establish connection to controller")
app.data.serialPort.openConnection()
socketio.emit("my response", {"data": "Connected", "count": 0})
address = app.data.hostAddress
data = json.dumps({"hostAddress": address})
print(data)
socketio.emit(
"message",
{
"command": "hostAddress",
"data": data,
"dataFormat": "json"
},
namespace="/MaslowCNC",
)
if app.data.pyInstallUpdateAvailable:
app.data.ui_queue1.put("Action", "pyinstallUpdate", "on")
def reload_status():
ecoe_configs = Manager.get_ecoe_config_files()
for ecoe_config in ecoe_configs:
# 1. Create configuration in app memory
ecoe = Manager.create_config(ecoe_config)
# 2. Load objects
for e_round in ecoe.rounds:
try:
round_status = Manager.load_status_from_file(
e_round.status_filename)
if len(round_status) > 0:
chrono_status = Manager.load_status_from_file(
e_round.chrono.status_filename)
if len(chrono_status) > 0:
e_round.chrono.minutes = chrono_status['minutes']
e_round.chrono.seconds = chrono_status['seconds']
e_round.chrono.state = chrono_status['state']
ecoe.threads.append(
socketio.start_background_task(
target=e_round.start,
state=round_status['state'],
current_rerun=round_status['current_rerun'],
idx_schedule=round_status[
'current_idx_schedule']))
except:
pass
def on_connect(self):
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(
target=background_thread)
emit('my_response', {'data': 'Connected', 'count': 0})
def test_connect():
global thread
print('Client connected')
if not thread.isAlive():
thread_stop_event.clear()
print("Starting Thread")
thread = socketio.start_background_task(sendValues)
def start(self):
"""
start to listen to the serial port of the Arduino
"""
# opening the serial
if not self.is_open():
s = self.open_serial()
# configure the serial
if self.setpoint:
self.set_setpoint()
time.sleep(0.2)
if self.gain:
self.set_gain()
time.sleep(0.2)
if self.integral:
self.set_integral()
time.sleep(0.2)
if self.diff:
self.set_differential()
# starting the listener
if not self.is_alive():
self.switch = True
db.session.commit()
thread = socketio.start_background_task(target=do_work, id=self.id)
self.thread_id = thread.ident
db.session.commit()
workers.append(thread)
else:
print('Already running')
def start(self):
"""
start to listen to the serial port of the Arduino
"""
# test if everything is open
if not self.is_open():
print('No connection');
return
# configure the arduino
if self.setpoint:
self.set_setpoint();
time.sleep(0.2);
if self.gain:
self.set_gain();
time.sleep(0.2);
if self.integral:
self.set_integral();
time.sleep(0.2);
if self.diff:
self.set_differential();
# starting the listener
if not self.is_alive():
self.switch = True
db.session.commit();
thread = socketio.start_background_task(target=do_web_work, id = self.id, app = current_app._get_current_object());
self.thread_str = str(thread.ident)
db.session.commit()
workers.append(thread);
else:
print('Already running')
def tool_connect():
print('Client connected')
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(target=background_thread)
emit("server_log", {'data': 'Connect'})
def solver():
global current_question, current_game, timeout
current_question = 0
if "timer" in current_game:
timeout = int(current_game["timer"]["timeout"])
if( timeout >= 0):
socketio.start_background_task(target=timer)
try:
import RPi.GPIO as GPIO
GPIO.setmode(GPIO.BCM)
except:
response = "There was an error setting up GPIO."
logging.error(response)
logger.info("""Current game is: "{0}" """.format(current_game))
current_qa = current_game['questions'][current_question]
logger.info("""Current question is: "{0}" """.format(current_qa['question']))
logger.info("""Current right answer is: "{0}" """.format(current_qa['answer']))
#logger.info("timer started")
#socketio.sleep(5)
#logger.info("timer expired")
#socketio.emit('next question', current_question +1, namespace='/test')
#return
questions_n = len(current_game['questions'])
for n in range(0, questions_n):
pin = current_qa['answer'][n]
GPIO.setup(int(pin), GPIO.IN)
while game_in_progress:
if GPIO.input(int(pin)) == True:
logger.info("Detected the correct pin.")
current_question = current_question + 1
socketio.emit('next question', current_question, namespace='/test')
break
else:
logger.info("Detected the wrong pin.")
current_question = 0
socketio.emit('lost', current_question, namespace='/test')
return
socketio.emit('win', current_question, namespace='/test')
return
def registerPatientEvent(message):
registrationToken = message["registrationToken"]
windowToken = message["windowToken"]
global thread
with thread_lock:
#if thread is None:
thread = socketio.start_background_task(background_thread,
registrationToken, windowToken)
def test_connect():
global thread
#TODO change the idea of sending the user's name
name = tg_module.dia[-1].obj.name
socketio.emit('info_responder', {'self_name': name}, namespace='/main')
with locky:
if thread is None:
thread = socketio.start_background_task(target=tg_module.resender)
def on_connect(self):
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(active911_thread, \
current_app._get_current_object())
emit('my_response', {'data': 'Connected', 'count': 0})
def test_connect(message):
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(
target = background_thread)
emit('my_request', {'data': 'Connected', 'sid':request.sid})
def pilab_connect():
'''
Start the background thread upon connecting
'''
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(target=background_thread)
def test_connect():
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(target=get_messages)
emit('my_response', {'data': 'Connected', 'count': 0})
print('connected')
def start_job_manager() -> None:
"""
Starts the main job manager thread for the backend system.
:return:
"""
job_thread = socketio.start_background_task(target=_spawn_jobqueue) # type: Thread
job_thread.start()
def test_connect():
print("----Client Connected------")
global thread
ms = {"Message": "Connected to server"}
with thread_lock:
if thread is None:
thread = socketio.start_background_task(task_scheduler)
emit('get_tasks_response', {"data": json.dumps(ms)})
def on_connect(self):
from app import socketio
global thread
emit("connected", "connected")
socketio.sleep(5)
if thread is None:
with current_app.app_context():
thread = socketio.start_background_task(
background_thread, socketio, request.sid)
def test_connect():
# 单例模式创建线程，定时发布消息
global thread1, thread2
with lock:
if thread1 is None:
thread1 = socketio.start_background_task(target=background_task)
thread2 = socketio.start_background_task(target=background_task2)
# 未读信息
if isinstance(current_user.is_anonymous, bool):
return
else:
# 私信未读
message = Message.query.filter_by(toId=current_user.id,
hasRead=0).all()
# feed
# h = a-b if a>b else a+b
emit('noreadmsg', {'data': '' if len(message) == 0 else len(message)})
def start_background(target, secs, resp_id):
socket_thread = socketio.start_background_task(
target=target,
socketio=socketio,
secs=secs,
resp_id=resp_id
)
return socket_thread
def add_samples_by_csv():
if request.method == 'OPTIONS':
return jsonify({'status': 'Success'})
@copy_current_request_context
def bg_add_samples_by_csv(sample_file, project_id):
task = 'add_samples'
task_notifier = TaskNotifier(task=task, namespace=SOCK_NAMESPACE)
task_notifier.emit_task_start()
project = GenotypingProject.query.get(project_id)
if not project:
task_notifier.emit_task_failure(message="Genotyping Project Not Found. Restart Application.")
sample_ids = []
try:
task_notifier.emit_task_progress(progress={
'style': 'indeterminate',
'total': 1,
'current_state': 1,
'message': 'Adding Samples...'
})
r = CaseInsensitiveDictReader(sample_file)
for line in r:
barcode = line['sample_id']
sample = Sample.query.filter(Sample.barcode == barcode).first()
if not sample:
task_notifier.emit_task_failure(message=f"Sample with barcode '{barcode}' does not exist.")
return
sample_ids.append(sample.id)
project.add_samples(sample_ids)
except KeyError:
task_notifier.emit_task_failure(message=f"File Malformed. Header must be 'Sample ID'")
project.last_updated = datetime.utcnow()
task_notifier.emit_task_success(message="Successfully Added Samples.")
sample_file = request.files.getlist('files')[0]
sample_file_stream = io.StringIO(sample_file.stream.read().decode("utf-8"), newline=None)
project_id = request.form.get('project_id')
socketio.start_background_task(bg_add_samples_by_csv, sample_file_stream, project_id)
return jsonify({'status': 'Success'})
def log_connect():
app.data.console_queue.put("connected to log")
app.data.console_queue.put(request.sid)
if app.logstreamerthread == None:
app.logstreamerthread = socketio.start_background_task(
app.LogStreamer.start, current_app._get_current_object()
)
app.logstreamerthread.start()
socketio.emit("my response", {"data": "Connected", "count": 0}, namespace="/MaslowCNCLog")
def test_connect():
print("connected")
print(request.sid)
if app.uithread == None:
app.uithread = socketio.start_background_task(
app.UIProcessor.start, current_app._get_current_object()
)
app.uithread.start()
socketio.emit("my response", {"data": "Connected", "count": 0})
def test_connect():
time_dict()
global thread
if thread is None:
# Once any client is connected, the background_thread function starts in loop
thread = socketio.start_background_task(target=background_thread)
socketio.emit('my_response',
{'data': 'Message from server', 'time': time},
namespace='/test')
def unload():
print('close')
sid = int(request.headers['Referer'].split('_')[2])
cid = current_user.id
room = get_room(sid, cid)
out_room(room, sid, cid)
# save massage to file
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(msg_to_file, room)
def watchdog_connect():
app.data.console_queue.put("watchdog connected")
app.data.console_queue.put(request.sid)
socketio.emit("connect", namespace="/WebMCP")
if app.mcpthread == None:
app.data.console_queue.put("going to start mcp thread")
app.mcpthread = socketio.start_background_task(
app.data.mcpProcessor.start, current_app._get_current_object())
app.data.console_queue.put("created mcp thread")
app.mcpthread.start()
app.data.console_queue.put("started mcp thread")
def test_connect(message):
"""
使用线程,后台异步执行推送
:param message:
:return:
"""
global thread
with thread_lock:
if thread is None:
thread = socketio.start_background_task(target=background_thread)
emit('my_request', {'data': 'Connected', 'sid': request.sid})
def test_connect():
global thread
if thread is None:
thread = socketio.start_background_task(target=background_thread)
for c in current_user.chats:
join_room(str(c.chat.id))
string=readLog(str(c.chat.id))
for s in string[1:-1]:
mess = split("\t", s)
#if mess[2] is not None:
emit('my_response', {'data': mess[2], 'user': mess[0], 'room': str(c.chat.id), 'date':mess[1]})
def client_connect():
global camera_streams_thread
global display_thread
host = current_app.config['FTP_HOST']
user = current_app.config['FTP_USER']
password = current_app.config['FTP_PASSWORD']
with thread_lock:
if display_thread is None:
ftp_client = FtpClient(host, user, password)
display_thread = socketio.start_background_task(
display_images, current_app._get_current_object(), ftp_client)
if camera_streams_thread is None:
ftp_client = FtpClient(host, user, password)
image_downloader = ImageDownloader()
camera_streams_thread = socketio.start_background_task(
camera_streams, current_app._get_current_object(), ftp_client,
image_downloader)
emit('server_event', {'data': 'Client connected', 'count': 0})
def connect():
"""new client connected"""
if current_app.config['child_pid']:
# already started child process, don't start another
return
# create child process attached to a pty we can read from and write to
(child_pid, fd) = pty.fork()
if child_pid == 0:
# this is the child process fork.
# anything printed here will show up in the pty, including the output
# of this subprocess
print('Using pid %i ...' % os.getpid())
print('Starting subcommand %s ...' % current_app.config['CMD'])
sys.stdout.flush()
subprocess.run(current_app.config['CMD'])
print('Exit the child!')
sys.stdout.flush()
#sys.exit(0)
os._exit(0) # quit the child process leaves the process as zombie ...
else:
# this is the parent process fork.
# store child fd and pid
msg = 'Create a child process pid={}'.format(child_pid)
current_app.logger.info(msg)
# copy the data to the app context
current_app.config['fd'] = fd
current_app.config['child_pid'] = child_pid
set_winsize(fd, 50, 50)
#cmd = " ".join(shlex.quote(c) for c in current_app.config["cmd"])
cmd = current_app.config['CMD']
#print('child pid is', child_pid)
#print(
# f'starting background task with command `{cmd}` to continously read '
# 'and forward pty output to client'
#)
socketio.start_background_task(target=read_and_forward_pty_output,
app=current_app._get_current_object())
def start(self):
"""
start to listen to the serial port of the Arduino
"""
print('Starting the listener.')
if not self.switch:
self.switch = True
db.session.commit();
thread = socketio.start_background_task(target=do_work, cam_id = self.id);
self.thread_id = thread.ident;
db.session.commit()
workers.append(thread);
else:
print('Already running')
def upload_samples():
if request.method == 'OPTIONS':
return jsonify({'status': 'Success'})
@copy_current_request_context
def bg_upload_samples(sample_file):
task = 'upload_samples'
task_notifier = TaskNotifier(task=task, namespace=SOCK_NAMESPACE)
task_notifier.emit_task_start()
with open(sample_file, 'r') as f:
try:
r = CaseInsensitiveDictReader(f)
entries = list(r)
id_field = next(_ for _ in ['barcode', 'sample_id', 'id'] if _ in r.fieldnames)
designation_field = next(_ for _ in ['designation'] if _ in r.fieldnames)
task_notifier.emit_task_progress(progress={
'style': 'determinate',
'total': len(entries),
'current_state': 1,
'message': 'Creating Samples...'
})
for idx, entry in enumerate(entries):
barcode = entry[id_field].strip()
designation = entry.get(designation_field, 'sample').strip()
if barcode:
sample = Sample(barcode=barcode, designation=designation)
db.session.add(sample)
task_notifier.emit_task_progress(progress={
'style': 'determinate',
'total': len(entries),
'current_state': idx + 1,
'message': 'Creating Samples...'
})
except UnicodeDecodeError:
task_notifier.emit_task_failure(
message="Sample File Malformed. Must be CSV File."
)
db.session.rollback()
return
except StopIteration:
task_notifier.emit_task_failure(
message="Sample File Malformed. Sample Identifier Must be [('Barcode', 'Sample ID', or 'ID'), "
"'Designation']. "
)
db.session.rollback()
return
except (sqlite3.IntegrityError, sqlalchemy.exc.IntegrityError):
task_notifier.emit_task_failure(message=f'{id_field} Must Be Unique.')
db.session.rollback()
return
except AssertionError:
task_notifier.emit_task_failure(
message="Sample File Malformed. Designation must be one of ['Negative Control', 'Positive "
"Control', 'Sample'] "
)
except Exception as e:
# print(e)
task_notifier.emit_task_failure(
message="Something Bad Happened Creating Samples... Restart App"
)
return
task_notifier.emit_task_success()
sample_file = request.files.getlist('files')[0]
handle, tmpfile_path = tempfile.mkstemp()
tmpfile = os.fdopen(handle, mode='wb')
tmpfile.write(sample_file.stream.read())
socketio.start_background_task(bg_upload_samples, tmpfile_path)
return jsonify({'status': 'Success'})
def add_controls_by_csv():
if request.method == 'OPTIONS':
return jsonify({'status': 'Success'})
@copy_current_request_context
def bg_add_controls_by_csv(control_file, project_id):
task = 'add_controls'
task_notifier = TaskNotifier(task=task, namespace=SOCK_NAMESPACE)
task_notifier.emit_task_start()
project = QuantificationBiasEstimatorProject.query.get(project_id)
if not project:
task_notifier.emit_task_failure(
message="Quantification Bias Estimator Project Not Found. Restart Application."
)
return
task_notifier.emit_task_progress(progress={
'style': 'indeterminate',
'total': 1,
'current_state': 1,
'message': 'Associating Controls...'
})
r = CaseInsensitiveDictReader(control_file)
control_map = {}
for d in r:
try:
barcode = d.pop('barcode')
except KeyError:
task_notifier.emit_task_failure(message="CSV file malformed. Barcode column not found.")
return
if not barcode:
task_notifier.emit_task_failure(message='CSV file malformed. Barcode field empty')
return
sample_id = Sample.query.filter(Sample.barcode == barcode).value(Sample.id)
if not sample_id:
task_notifier.emit_task_failure(message=f'Sample with barcode {barcode} does not exist.')
return
sample_already_present = db.session.query(
ControlSampleAssociation.query
.join(ProjectSampleAnnotations)
.filter(ProjectSampleAnnotations.project_id == project_id,
ProjectSampleAnnotations.sample_id == sample_id)
.exists()
).scalar()
if sample_already_present:
task_notifier.emit_task_failure(message=f'Sample with barcode {barcode} already in project')
return
controls_and_props = d.values()
controls_and_props = list(map(lambda _: _.strip().split(';'), controls_and_props))
controls = []
for control_and_prop in controls_and_props:
if len(control_and_prop) > 1:
control, prop = control_and_prop
try:
prop = float(prop)
except ValueError:
task_notifier.emit_task_failure(
message=f"Failed to associate controls. {control} proportion field malformed."
)
return
try:
c = Control.query.filter(Control.barcode == control).filter(
Control.bin_estimator_id == project.bin_estimator_id).one()
except NoResultFound:
task_notifier.emit_task_failure(
message=f"Failed to find control {control}. "
f"Make sure it exists for associated Bin Estimator."
)
return
controls.append((c.id, prop))
if controls:
control_map[sample_id] = controls
sample_ids = control_map.keys()
project.add_samples(sample_ids)
# db.session.flush()
sample_annotation_ids = project.sample_annotations.values(
ProjectSampleAnnotations.id, ProjectSampleAnnotations.sample_id
)
for sa_id, sample_id in sample_annotation_ids:
if sample_id in control_map:
try:
project.assign_controls(sa_id, control_map[sample_id])
except BadProportions:
db.session.rollback()
task_notifier.emit_task_failure(message="Control proportions do not sum to 1")
return
task_notifier.emit_task_success(message="Successfully Added Samples.")
control_file = request.files.getlist('files')[0]
control_file_stream = io.StringIO(control_file.stream.read().decode('utf-8'), newline=None)
project_id = request.form.get('project_id')
socketio.start_background_task(bg_add_controls_by_csv, control_file_stream, project_id)
return jsonify({'status': 'Success'})
def upload_plate_map():
@copy_current_request_context
def bg_upload_plate_map(plate_map_file, plate_id, create_non_existent_samples):
socketio.sleep()
task = 'upload_plate_map'
task_notifier = TaskNotifier(task=task, namespace=SOCK_NAMESPACE, plate_id=plate_id)
task_notifier.emit_task_start()
plate = Plate.query.get(plate_id)
if not plate:
task_notifier.emit_task_failure(message="No Plate Map Uploaded")
else:
plate_map = csv.DictReader(plate_map_file)
if 'well' not in [_.lower() for _ in plate_map.fieldnames]:
task_notifier.emit_task_failure(message="Plate Map Malformed.")
return
locus_labels = [_.strip() for _ in plate_map.fieldnames if _.lower() not in ['', 'well']]
clear_plate_map(plate_id)
stale_tracker = dict()
plate_map = list(plate_map)
total_steps = len(plate_map)
for idx, entry in enumerate(plate_map):
socketio.sleep()
well_label = entry['Well'].strip()
for locus_label in locus_labels:
socketio.sleep()
sample_barcode = entry[locus_label].strip()
if sample_barcode:
sample = Sample.query.filter(Sample.barcode == sample_barcode).one_or_none()
locus = Locus.query.filter(Locus.label == locus_label).one_or_none()
if not sample and create_non_existent_samples:
sample = Sample(barcode=sample_barcode, designation='sample')
db.session.add(sample)
if not sample:
task_notifier.emit_task_failure(
message=f"Sample with barcode '{sample_barcode}' does not exist."
)
db.session.rollback()
return
if not locus:
task_notifier.emit_task_failure(
message=f"Locus with label '{locus_label}' does not exist."
)
db.session.rollback()
return
projects = get_projects_with_samples(sample.id, locus.id)
well = plate.wells_dict[well_label]
channel = well.channels_dict[locus.color]
channel.add_locus(locus.id)
channel.add_sample(sample.id)
for project in projects:
if not channel_in_project(project.id, channel.id):
project.add_channel(channel.id)
if not (project.id, locus.id,) in stale_tracker:
lp = ProjectLocusParams.query.filter(
ProjectLocusParams.project_id == project.id
).filter(
ProjectLocusParams.locus_id == locus.id
).one()
lp.scanning_parameters_stale = True
stale_tracker[(project.id, locus.id)] = True
task_notifier.emit_task_progress(
progress={
'style': 'determinate',
'total': total_steps,
'current_state': idx + 1,
'message': f'Processing {sample_barcode} at {locus_label}...'
}
)
task_notifier.emit_task_success(message="Plate Map Loaded Successfully")
plate_map_file = request.files.getlist('files')[0]
plate_map_stream = io.StringIO(plate_map_file.stream.read().decode("utf-8"), newline=None)
create_non_existent_samples = request.form.get('create_non_existent_samples') == 'true'
plate_id = int(request.form.get('plate_id'))
socketio.start_background_task(bg_upload_plate_map, plate_map_stream, plate_id, create_non_existent_samples)
return jsonify({'status': "Success"})
def upload_plates():
if request.method == 'OPTIONS':
return jsonify({'status': 'Success'})
@copy_current_request_context
def bg_upload_plates(plate_files, ladder_id):
extracted_plates = []
ladder = Ladder.query.get(ladder_id)
task = 'upload_plate'
task_notifier = TaskNotifier(task=task, namespace=SOCK_NAMESPACE, ladder_id=ladder_id)
task_notifier.emit_task_start()
for idx, plate_zip_file in enumerate(plate_files):
try:
with open(plate_zip_file, 'rb') as plate_zip:
extracted_plate = ExtractedPlate.from_zip_and_calculate_base_sizes(
zip_file=plate_zip,
ladder=ladder.base_sizes,
color=ladder.color,
base_size_precision=ladder.base_size_precision,
sq_limit=ladder.sq_limit,
filter_parameters=ladder.filter_parameters,
scanning_parameters=ladder.scanning_parameters
)
if not plate_hash_already_exists(extracted_plate.plate_hash):
extracted_plates.append(extracted_plate)
task_notifier.emit_task_progress(progress={
'style': 'determinate',
'total': len(plate_files) + 2,
'current_state': idx + 1,
'message': f'Parsing {extracted_plate.label}...',
})
socketio.sleep()
else:
task_notifier.emit_task_progress(progress={
'style': 'determinate',
'total': len(plate_files),
'current_state': idx + 1,
'message': f"Cannot Process {extracted_plate.label}, Already Exists In Database."
})
socketio.sleep()
except Exception as e:
# print("Exception Not Caught", e)
task_notifier.emit_task_progress(progress={
'style': 'determinate',
'total': len(plate_files),
'current_state': idx + 1,
'message': f"Cannot Process {plate_zip.filename}",
})
socketio.sleep()
finally:
os.remove(plate_zip_file)
task_notifier.emit_task_progress(progress={
'style': 'determinate',
'total': len(plate_files) + 2,
'current_state': len(plate_files) + 1,
'message': f'Saving Plate Data...',
})
socketio.sleep()
submitted_plates = [Plate.from_extracted_plate(plate, ladder) for plate in extracted_plates]
db.session.commit()
socketio.sleep()
task_notifier.emit_task_success(message={'ids': [plate.id for plate in submitted_plates]})
socketio.sleep()
plate_zips = request.files.getlist('files')
files = []
for f in plate_zips:
handle, tmpfile_path = tempfile.mkstemp()
tmpfile = os.fdopen(handle, mode='wb')
tmpfile.write(f.stream.read())
files.append(tmpfile_path)
ladder_id = request.form.get('ladder_id')
socketio.start_background_task(bg_upload_plates, files, ladder_id)
return jsonify({'status': "Success"})
