def preLoopFunctions(self): self.dd = apDDprocess.initializeDDFrameprocess(self.params['sessionname'],self.params['wait']) self.dd.setUseGS(self.params['useGS']) self.dd.setRunDir(self.params['rundir']) self.dd.setTempDir(self.params['tempdir']) self.dd.setRawFrameType(self.getFrameType()) self.dd.setUseGPUFlat(True) self.dd.setSquareOutputShape(self.params['square']) self.dd.setTrimingEdge(self.params['trim']) self.dd.setDoseFDriftCorrOptions(self.params) self.dd.setGPUid(self.params['gpuid']) # keepstack is resolved for various cases in conflict check. There should be no ambiguity by now self.dd.setKeepStack(self.params['keepstack']) self.dd.setCycleReferenceChannels(self.params['cyclechannels']) if self.params['refimgid']: self.dd.setDefaultImageForReference(self.params['refimgid']) self.imageids = [] if self.params['stackid']: # create a list of unaligned imageids from the particle stack imageids_from_stack = apStack.getImageIdsFromStack(self.params['stackid']) self.imageids = self.getUnAlignedImageIds(imageids_from_stack) # Optimize AppionLoop wait time for this since the processing now takes longer than # image acquisition self.setWaitSleepMin(0.4) self.setProcessBatchCount(1)
def preLoopFunctions(self):
self.dd = apDDprocess.initializeDDFrameprocess(
self.params['sessionname'], self.params['wait'])
self.dd.setRunDir(self.params['rundir'])
self.dd.setDoseFDriftCorrOptions(self.params)
self.dd.setGPUid(self.params['gpuid'])
# keepstack is resolved for various cases in conflict check. There should be no ambiguity by now
self.dd.setKeepStack(self.params['keepstack'])
self.gain_corrected_ddproc = None
self.imageids = []
if self.params['stackid']:
# create a list of unaligned imageids from the particle stack
imageids_from_stack = apStack.getImageIdsFromStack(
self.params['stackid'])
self.imageids = self.getUnAlignedImageIds(imageids_from_stack)
if not self.params['ddstack']:
print 'This does not work yet. Need to create gain-corrected-ddstack first'
if self.params['ddstack']:
self.gain_corrected_ddproc = apDDprocess.DDStackProcessing()
self.gain_corrected_ddproc.setDDStackRun(
ddstackrunid=self.params['ddstack'])
# Optimize AppionLoop wait time for this since the processing now takes longer than
# image acquisition
self.setWaitSleepMin(0.4)
self.setProcessBatchCount(1)
def preLoopFunctions(self):
self.dd = apDDprocess.initializeDDFrameprocess(self.params['sessionname'],self.params['wait'])
self.dd.setUseGS(self.params['useGS'])
self.dd.setRunDir(self.params['rundir'])
self.dd.setTempDir(self.params['tempdir'])
self.dd.setRawFrameType(self.getFrameType())
self.dd.setUseGPUFlat(self.params['gpuflat'])
self.dd.setGPUid(self.params['gpuid'])
# keepstack is resolved for various cases in conflict check. There should be no ambiguity by now
self.dd.setKeepStack(self.params['keepstack'])
self.dd.setCycleReferenceChannels(self.params['cyclechannels'])
if self.params['refimgid']:
self.dd.setDefaultImageForReference(self.params['refimgid'])
self.imageids = []
if self.params['stackid']:
self.imageids = apStack.getImageIdsFromStack(self.params['stackid'])
# Optimize AppionLoop wait time for this since the processing now takes longer than
# image acquisition
self.setWaitSleepMin(0.4)
self.setProcessBatchCount(1)
def preLoopFunctions(self):
self.dd = apDDprocess.initializeDDFrameprocess(self.params["sessionname"], self.params["wait"])
self.dd.setRunDir(self.params["rundir"])
self.dd.setDoseFDriftCorrOptions(self.params)
self.dd.setGPUid(self.params["gpuid"])
# keepstack is resolved for various cases in conflict check. There should be no ambiguity by now
self.dd.setKeepStack(self.params["keepstack"])
self.gain_corrected_ddproc = None
self.imageids = []
if self.params["stackid"]:
# create a list of unaligned imageids from the particle stack
imageids_from_stack = apStack.getImageIdsFromStack(self.params["stackid"])
self.imageids = self.getUnAlignedImageIds(imageids_from_stack)
if not self.params["ddstack"]:
print "This does not work yet. Need to create gain-corrected-ddstack first"
if self.params["ddstack"]:
self.gain_corrected_ddproc = apDDprocess.DDStackProcessing()
self.gain_corrected_ddproc.setDDStackRun(ddstackrunid=self.params["ddstack"])
# Optimize AppionLoop wait time for this since the processing now takes longer than
# image acquisition
self.setWaitSleepMin(0.4)
self.setProcessBatchCount(1)
