def insertFSCData(self, iternum, refineIterData):
fscfile = 'fsc.eotest.%d'%(iternum)
fscpath = os.path.join(self.params['rundir'], "iter%03d"%(iternum), fscfile)
if not os.path.isfile(fscpath):
apDisplay.printWarning("Could not find FSC file: "+fscpath)
return None
f = open(fscpath, 'r')
apDisplay.printMsg("inserting FSC Data into database")
numinserts = 0
for line in f:
fscq = appiondata.ApFSCData()
fscq['refineIter'] = refineIterData
sline = line.strip()
bits = sline.split('\t')
fscq['pix'] = int(bits[0])
fscq['value'] = float(bits[1])
numinserts+=1
if self.params['commit'] is True:
fscq.insert()
apDisplay.printMsg("inserted "+str(numinserts)+" rows of FSC data into database")
f.close()
def insertFSCData(self, fscfile, refineIterData):
'''
current functions read the inverse pixel number and correlation value. This function, therefore, converts
generic FSC parameters into pixel / correlation format
'''
if not os.path.isfile(fscfile):
apDisplay.printWarning("Could not open FSC file: " + fscfile)
### skip commented out lines and read FSC data
f = open(fscfile, 'r')
fscfileinfo = f.readlines()
f.close()
for i, info in enumerate(fscfileinfo):
if info[0] == "#":
pass
else:
fscfileinfo = fscfileinfo[i:]
break
### insert FSC data into database with the convention: pixel number, FSC
numinserts = 0
for j, info in enumerate(fscfileinfo):
fscq = appiondata.ApFSCData()
fscq['refineIter'] = refineIterData
fscq['pix'] = j + 1
fscq['value'] = float(info.split()[1])
numinserts += 1
if self.params['commit'] is True:
fscq.insert()
if self.params['commit'] is True:
apDisplay.printMsg("inserted " + str(numinserts) +
" rows of FSC data into database")
return
def insertFSC(self, fscfile, refineIterData, commit=True):
if not os.path.isfile(fscfile):
apDisplay.printWarning("Could not open FSC file: "+fscfile)
f = open(fscfile,'r')
apDisplay.printMsg("inserting FSC Data into database")
numinserts = 0
for line in f:
fscq = appiondata.ApFSCData()
fscq['refineIter'] = refineIterData
line = line.rstrip()
bits = line.split('\t')
fscq['pix'] = int(bits[0])
fscq['value'] = float(bits[1])
numinserts+=1
if commit is True:
fscq.insert()
apDisplay.printMsg("inserted "+str(numinserts)+" rows of FSC data into database")
f.close()
