def insertModel(alignerdata, results):
# general protmo parameters
q = appiondata.ApProtomoModelData()
q['aligner'] = alignerdata
q['psi'] = results[-2]['psi']
q['theta'] = results[-2]['theta']
q['phi'] = results[-2]['phi']
q['azimuth'] = results[-2]['azimuth']
modeldata = apTomo.publish(q)
return modeldata
def insertModel2(alignerdata, geometrydict):
# general protomo2 model data
q = appiondata.ApProtomoModelData()
q['aligner'] = alignerdata
q['psi'] = geometrydict['psi']
q['theta'] = geometrydict['theta']
q['phi'] = geometrydict['phi']
q['azimuth'] = geometrydict['azimuth']
modeldata = apTomo.publish(q)
return modeldata
def getAlignmentFromDB(alignerdata, center):
q = appiondata.ApProtomoModelData(aligner=alignerdata)
results = q.query(results=1)
model = results[0]
specimen_euler = {
'psi': model['psi'],
'theta': model['theta'],
'phi': model['phi']
}
tiltaz = model['azimuth']
q = appiondata.ApProtomoAlignmentData(aligner=alignerdata)
results = q.query()
results.reverse()
origins = []
rotations = []
for r in results:
origins.append(
(r['shift']['x'] + center['x'], r['shift']['y'] + center['y']))
rotations.append(r['rotation'])
return specimen_euler, tiltaz, origins, rotations