def check_job_status(job_id):
"""
Possible statuses: `before_submission`, `running`, `errored on node xx`, `done`
Status line formats:
OGE::
540420 0.45326 xq1340b user_name r 10/26/2018 11:08:30 [email protected]
Slurm::
14428 debug xq1371m2 user_name R 50-04:04:46 1 node06
PBS (taken from zeldo.dow.com)::
Req'd Req'd Elap
Job ID Username Queue Jobname SessID NDS TSK Memory Time S Time
----------------------- ----------- -------- ---------------- ------ ----- ------ --------- --------- - ---------
2016614.zeldo.local u780444 workq scan.pbs 75380 1 10 -- 730:00:00 R 00:00:20
2016616.zeldo.local u780444 workq scan.pbs 75380 1 10 -- 730:00:00 R 00:00:20
"""
server = 'local'
cmd = check_status_command[servers[server]['cluster_soft']] + ' -u $USER'
stdout = execute_command(cmd)[0]
return check_job_status_in_stdout(job_id=job_id,
stdout=stdout,
server=server)
def test_check_job_status_in_stdout(self):
"""Test checking the job status in stdout"""
stdout = """job-ID prior name user state submit/start at queue slots ja-task-ID
-----------------------------------------------------------------------------------------------------------------
582682 0.45451 a9654 alongd e 04/17/2019 16:22:14 [email protected] 48
588334 0.45451 pf1005a alongd r 05/07/2019 16:24:31 [email protected] 48
588345 0.45451 a14121 alongd r 05/08/2019 02:11:42 [email protected] 48 """
status1 = ssh.check_job_status_in_stdout(job_id=588345,
stdout=stdout,
server='server1')
self.assertEqual(status1, 'running')
status2 = ssh.check_job_status_in_stdout(job_id=582682,
stdout=stdout,
server='server1')
self.assertEqual(status2, 'errored')
status3 = ssh.check_job_status_in_stdout(job_id=582600,
stdout=stdout,
server='server1')
self.assertEqual(status3, 'done')
def check_job_status(job_id):
"""
Possible statuses: `before_submission`, `running`, `errored on node xx`, `done`
Status line formats:
pharos: '540420 0.45326 xq1340b user_name r 10/26/2018 11:08:30 [email protected]'
rmg: '14428 debug xq1371m2 user_name R 50-04:04:46 1 node06'
"""
server = 'local'
cmd = check_status_command[
servers[server]['cluster_soft']] + ' -u ' + servers[server]['un']
stdout = execute_command(cmd)[0]
return check_job_status_in_stdout(job_id=job_id,
stdout=stdout,
server=server)