def _upload_input_file(self):
ssh = SSH_Client(self.server)
ssh.send_command_to_server(
command='mkdir -p {0}'.format(self.remote_path))
remote_file_path = os.path.join(self.remote_path,
input_filename[self.software])
ssh.upload_file(remote_file_path=remote_file_path,
file_string=self.input)
self.initial_time = ssh.get_last_modified_time(
remote_file_path=remote_file_path)
def _download_output_file(self):
ssh = SSH_Client(self.server)
remote_file_path = os.path.join(self.remote_path, output_filename[self.software])
local_file_path = os.path.join(self.local_path, 'output.out')
ssh.download_file(remote_file_path=remote_file_path, local_file_path=local_file_path)
if self.job_type == 'orbitals':
remote_file_path = os.path.join(self.remote_path, 'input.FChk')
local_file_path = os.path.join(self.local_path_to_orbitals_file)
ssh.download_file(remote_file_path=remote_file_path, local_file_path=local_file_path)
self.final_time = ssh.get_last_modified_time(remote_file_path=remote_file_path)
self.determine_run_time()
if not os.path.isfile(local_file_path):
raise JobError('output file for {0} was not downloaded properly'.format(self.job_name))