def build_nodes_from_template(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int) \
->Tuple[TensorShapes, List[NodeDesc]]:
cell_template = self.get_cell_template(cell_index)
assert cell_template is not None
cell_type = self.get_cell_type(cell_index)
assert cell_template.cell_type==cell_type
nodes:List[NodeDesc] = []
for n in cell_template.nodes():
edges_copy = [e.clone(
# use new macro params
conv_params=ConvMacroParams(self.get_ch(stem_shapes[0]),
self.get_ch(stem_shapes[0])),
# TODO: check for compatibility?
clear_trainables=True
) for e in n.edges]
nodes.append(NodeDesc(edges=edges_copy, conv_params=n.conv_params))
out_shapes = [copy.deepcopy(stem_shapes[0]) for _ in cell_template.nodes()]
return out_shapes, nodes
def build_nodes(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int, cell_type:CellType, node_count:int,
in_shape:TensorShape, out_shape:TensorShape) \
->Tuple[TensorShapes, List[NodeDesc]]:
assert in_shape[0] == out_shape[0]
reduction = (cell_type == CellType.Reduction)
nodes: List[NodeDesc] = []
conv_params = ConvMacroParams(in_shape[0], out_shape[0])
# add div op for each edge in each node
# how does the stride works? For all ops connected to s0 and s1, we apply
# reduction in WxH. All ops connected elsewhere automatically gets
# reduced WxH (because all subsequent states are derived from s0 and s1).
# Note that channel is increased via conv_params for the cell
for i in range(node_count):
edges = []
for j in range(i + 2):
op_desc = OpDesc('div_op',
params={
'conv': conv_params,
'stride': 2 if reduction and j < 2 else 1
},
in_len=1,
trainables=None,
children=None)
edge = EdgeDesc(op_desc, input_ids=[j])
edges.append(edge)
nodes.append(NodeDesc(edges=edges, conv_params=conv_params))
out_shapes = [copy.deepcopy(out_shape) for _ in range(node_count)]
return out_shapes, nodes
def build_nodes(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int, cell_type:CellType, node_count:int,
in_shape:TensorShape, out_shape:TensorShape) \
->Tuple[TensorShapes, List[NodeDesc]]:
assert in_shape[0]==out_shape[0]
nodes:List[NodeDesc] = []
conv_params = ConvMacroParams(in_shape[0], out_shape[0])
for i in range(node_count):
edges = []
input_ids = []
first_proj = False # if input node is connected then it needs projection
if self._cell_matrix[0, i+1]: # nadbench internal node starts at 1
input_ids.append(0) # connect to s0
first_proj = True
for j in range(i): # look at all internal vertex before us
if self._cell_matrix[j+1, i+1]: # if there is connection
input_ids.append(j+2) # offset because of s0, s1
op_desc = OpDesc('nasbench101_op',
params={
'conv': conv_params,
'stride': 1,
'vertex_op': self._vertex_ops[i+1], # offset because of input node
'first_proj': first_proj
}, in_len=len(input_ids), trainables=None, children=None) # TODO: should we pass children here?
edge = EdgeDesc(op_desc, input_ids=input_ids)
edges.append(edge)
nodes.append(NodeDesc(edges=edges, conv_params=conv_params))
out_shapes = [copy.deepcopy(out_shape) for _ in range(node_count)]
return out_shapes, nodes
def build_nodes(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int, cell_type:CellType, node_count:int,
in_shape:TensorShape, out_shape:TensorShape) \
->Tuple[TensorShapes, List[NodeDesc]]:
assert in_shape[0]==out_shape[0]
reduction = (cell_type==CellType.Reduction)
nodes:List[NodeDesc] = []
conv_params = ConvMacroParams(in_shape[0], out_shape[0])
# add xnas op for each edge
for i in range(node_count):
edges=[]
for j in range(i+2):
op_desc = OpDesc('xnas_op',
params={
'conv': conv_params,
'stride': 2 if reduction and j < 2 else 1
}, in_len=1, trainables=None, children=None)
edge = EdgeDesc(op_desc, input_ids=[j])
edges.append(edge)
nodes.append(NodeDesc(edges=edges, conv_params=conv_params))
out_shapes = [copy.deepcopy(out_shape) for _ in range(node_count)]
return out_shapes, nodes
def build_nodes(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int, cell_type:CellType, node_count:int,
in_shape:TensorShape, out_shape:TensorShape) \
->Tuple[TensorShapes, List[NodeDesc]]:
assert in_shape[0] == out_shape[0]
reduction = (cell_type == CellType.Reduction)
ops = self._reduction_ops if reduction else self._normal_ops
assert node_count == len(ops.ops_and_ins)
nodes: List[NodeDesc] = []
conv_params = ConvMacroParams(in_shape[0], out_shape[0])
for op_names, to_states in ops.ops_and_ins:
edges = []
# add random edges
for op_name, to_state in zip(op_names, to_states):
op_desc = OpDesc(op_name,
params={
'conv':
conv_params,
'stride':
2 if reduction and to_state < 2 else 1
},
in_len=1,
trainables=None,
children=None)
edge = EdgeDesc(op_desc, input_ids=[to_state])
edges.append(edge)
nodes.append(NodeDesc(edges=edges, conv_params=conv_params))
out_shapes = [copy.deepcopy(out_shape) for _ in range(node_count)]
return out_shapes, nodes
def build_nodes(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int, cell_type:CellType, node_count:int,
in_shape:TensorShape, out_shape:TensorShape) \
->Tuple[TensorShapes, List[NodeDesc]]:
# For petridish we add one node with identity to s1.
# This will be our seed model to start with.
# Later in PetridishSearcher, we will add one more node in parent after each sampling.
assert in_shape[0] == out_shape[0]
reduction = (cell_type == CellType.Reduction)
# channels for conv filters
conv_params = ConvMacroParams(in_shape[0], out_shape[0])
# identity op to connect S1 to the node
op_desc = OpDesc('skip_connect',
params={
'conv': conv_params,
'stride': 2 if reduction else 1
},
in_len=1,
trainables=None,
children=None)
edge = EdgeDesc(op_desc, input_ids=[1])
new_node = NodeDesc(edges=[edge], conv_params=conv_params)
nodes = [new_node]
# each node has same out channels as in channels
out_shapes = [copy.deepcopy(out_shape) for _ in nodes]
return out_shapes, nodes
def _build_cell(self, cell_desc: CellDesc) -> None:
reduction = (cell_desc.cell_type == CellType.Reduction)
self._ensure_nonempty_nodes(cell_desc)
# we operate on last node, inserting another node before it
new_nodes = [n.clone() for n in cell_desc.nodes()]
petridish_node = NodeDesc(edges=[])
new_nodes.insert(len(new_nodes) - 1, petridish_node)
input_ids = list(range(len(new_nodes))) # 2 + len-2
assert len(input_ids) >= 2
op_desc = OpDesc('petridish_reduction_op' if reduction else 'petridish_normal_op',
params={
'conv': cell_desc.conv_params,
# specify strides for each input, later we will
# give this to each primitive
'_strides':[2 if reduction and j < 2 else 1 \
for j in input_ids],
}, in_len=len(input_ids), trainables=None, children=None)
edge = EdgeDesc(op_desc, input_ids=input_ids)
petridish_node.edges.append(edge)
# note that post op will be recreated which means there is no
# warm start for post op when number of nodes changes
cell_desc.reset_nodes(new_nodes, cell_desc.node_ch_out,
cell_desc.post_op.name)
def finalize_node(self, node: nn.ModuleList, node_index: int,
node_desc: NodeDesc, max_final_edges: int, *args,
**kwargs) -> NodeDesc:
# get edge ranks, if rank is None it is deemed as required
pre_selected, edge_desc_ranks = self.get_edge_ranks(node)
ranked_selected = self.select_edges(edge_desc_ranks, max_final_edges)
selected_edges = pre_selected + ranked_selected
return NodeDesc(selected_edges, node_desc.conv_params)
def finalize_node(self, node: nn.ModuleList, node_index: int,
node_desc: NodeDesc, max_final_edges: int, *args,
**kwargs) -> NodeDesc:
conf = get_conf()
gs_num_sample = conf['nas']['search']['model_desc']['cell']['gs'][
'num_sample']
# gather the alphas of all edges in this node
node_alphas = []
for edge in node:
if hasattr(edge._op, 'PRIMITIVES') and type(edge._op) == GsOp:
alphas = [alpha for op, alpha in edge._op.ops()]
node_alphas.extend(alphas)
# TODO: will creating a tensor from a list of tensors preserve the graph?
node_alphas = torch.Tensor(node_alphas)
assert node_alphas.nelement() > 0
# sample ops via gumbel softmax
sample_storage = []
for _ in range(gs_num_sample):
sampled = F.gumbel_softmax(node_alphas,
tau=1,
hard=True,
eps=1e-10,
dim=-1)
sample_storage.append(sampled)
samples_summed = torch.sum(torch.stack(sample_storage, dim=0), dim=0)
# send the sampled op weights to their
# respective edges to be used for edge level finalize
selected_edges = []
counter = 0
for _, edge in enumerate(node):
if hasattr(edge._op, 'PRIMITIVES') and type(edge._op) == GsOp:
this_edge_sampled_weights = samples_summed[counter:counter +
len(edge._op.
PRIMITIVES)]
counter += len(edge._op.PRIMITIVES)
# finalize the edge
if this_edge_sampled_weights.bool().any():
op_desc, _ = edge._op.finalize(this_edge_sampled_weights)
new_edge = EdgeDesc(op_desc, edge.input_ids)
selected_edges.append(new_edge)
# delete excess edges
if len(selected_edges) > max_final_edges:
# since these are sample edges there is no ordering
# amongst them so we just arbitrarily select a few
selected_edges = selected_edges[:max_final_edges]
return NodeDesc(selected_edges, node_desc.conv_params)
def finalize_node(self, node: nn.ModuleList,
max_final_edges: int) -> NodeDesc:
# get total number of ops incoming to this node
in_ops = [(edge,op) for edge in node \
for op, order in edge._op.ops()
if not isinstance(op, Zero)]
assert len(in_ops) >= max_final_edges
selected = random.sample(in_ops, max_final_edges)
# finalize selected op, select 1st value from return which is op finalized desc
selected_edges = [EdgeDesc(s[1].finalize()[0], s[0].input_ids) \
for s in selected]
return NodeDesc(selected_edges)
def build_nodes(self, stem_shapes:TensorShapes, conf_cell:Config,
cell_index:int, cell_type:CellType, node_count:int,
in_shape:TensorShape, out_shape:TensorShape) \
->Tuple[TensorShapes, List[NodeDesc]]:
# default: create nodes with empty edges
nodes:List[NodeDesc] = [NodeDesc(edges=[],
conv_params=ConvMacroParams(
in_shape[0], out_shape[0]))
for _ in range(node_count)]
out_shapes = [copy.deepcopy(out_shape) for _ in range(node_count)]
return out_shapes, nodes
def finalize_node(self, node:nn.ModuleList, node_index:int,
node_desc:NodeDesc, max_final_edges:int,
*args, **kwargs)->NodeDesc:
# node is a list of edges
assert len(node) >= max_final_edges
# covariance matrix shape must be square 2-D
assert len(cov.shape) == 2
assert cov.shape[0] == cov.shape[1]
# the number of primitive operators has to be greater
# than equal to the maximum number of final edges
# allowed
assert cov.shape[0] >= max_final_edges
# get total number of ops incoming to this node
num_ops = sum([edge._op.num_valid_div_ops for edge in node])
# and collect some bookkeeping indices
edge_num_and_op_ind = []
for j, edge in enumerate(node):
if type(edge._op) == DivOp:
for k in range(edge._op.num_valid_div_ops):
edge_num_and_op_ind.append((j, k))
assert len(edge_num_and_op_ind) == num_ops
# run brute force set selection algorithm
max_subset, max_mi = compute_brute_force_sol(cov, max_final_edges)
# convert the cov indices to edge descs
selected_edges = []
for ind in max_subset:
edge_ind, op_ind = edge_num_and_op_ind[ind]
op_desc = node[edge_ind]._op.get_valid_op_desc(op_ind)
new_edge = EdgeDesc(op_desc, node[edge_ind].input_ids)
selected_edges.append(new_edge)
# for edge in selected_edges:
# self.finalize_edge(edge)
return NodeDesc(selected_edges, node_desc.conv_params)
def _add_node(self, model_desc: ModelDesc,
model_desc_builder: ModelDescBuilder) -> None:
for ci, cell_desc in enumerate(model_desc.cell_descs()):
reduction = (cell_desc.cell_type == CellType.Reduction)
nodes = cell_desc.nodes()
# petridish must seed with one node
assert len(nodes) > 0
# input/output channels for all nodes are same
conv_params = nodes[0].conv_params
# assign input IDs to nodes, s0 and s1 have IDs 0 and 1
# however as we will be inserting new node before last one
input_ids = list(range(len(nodes) + 1))
assert len(input_ids) >= 2 # 2 stem inputs
op_desc = OpDesc('petridish_reduction_op' if reduction else 'petridish_normal_op',
params={
'conv': conv_params,
# specify strides for each input, later we will
# give this to each primitive
'_strides':[2 if reduction and j < 2 else 1 \
for j in input_ids],
}, in_len=len(input_ids), trainables=None, children=None)
edge = EdgeDesc(op_desc, input_ids=input_ids)
new_node = NodeDesc(edges=[edge], conv_params=conv_params)
nodes.insert(len(nodes) - 1, new_node)
# output shape of all nodes are same
node_shapes = cell_desc.node_shapes
new_node_shape = copy.deepcopy(node_shapes[-1])
node_shapes.insert(len(node_shapes) - 1, new_node_shape)
# post op needs rebuilding because number of inputs to it has changed so input/output channels may be different
post_op_shape, post_op_desc = model_desc_builder.build_cell_post_op(
cell_desc.stem_shapes, node_shapes, cell_desc.conf_cell, ci)
cell_desc.reset_nodes(nodes, node_shapes, post_op_desc,
post_op_shape)
def finalize_node(self, node:nn.ModuleList, node_index:int,
node_desc:NodeDesc, max_final_edges:int,
cov:np.array, cell: Cell, node_id: int,
*args, **kwargs)->NodeDesc:
# node is a list of edges
assert len(node) >= max_final_edges
# covariance matrix shape must be square 2-D
assert len(cov.shape) == 2
assert cov.shape[0] == cov.shape[1]
# the number of primitive operators has to be greater
# than equal to the maximum number of final edges
# allowed
assert cov.shape[0] >= max_final_edges
# get the order and alpha of all ops other than 'none'
in_ops = [(edge,op,alpha,i) for i, edge in enumerate(node) \
for op, alpha in edge._op.ops()
if not isinstance(op, Zero)]
assert len(in_ops) >= max_final_edges
# order all the ops by alpha
in_ops_sorted = sorted(in_ops, key=lambda in_op:in_op[2], reverse=True)
# keep under consideration top half of the ops
num_to_keep = max(max_final_edges, len(in_ops_sorted)//2)
top_ops = in_ops_sorted[:num_to_keep]
# get the covariance submatrix of the top ops only
cov_inds = []
for edge, op, alpha, edge_num in top_ops:
ind = self._divnas_cells[cell].node_num_to_node_op_to_cov_ind[node_id][op]
cov_inds.append(ind)
cov_top_ops = cov[np.ix_(cov_inds, cov_inds)]
assert len(cov_inds) == len(top_ops)
assert len(top_ops) >= max_final_edges
assert cov_top_ops.shape[0] == cov_top_ops.shape[1]
assert len(cov_top_ops.shape) == 2
# run brute force set selection algorithm
# only on the top ops
max_subset, max_mi = compute_brute_force_sol(cov_top_ops, max_final_edges)
# note that elements of max_subset are indices into top_ops only
selected_edges = []
for ind in max_subset:
edge, op, alpha, edge_num = top_ops[ind]
op_desc, _ = op.finalize()
new_edge = EdgeDesc(op_desc, edge.input_ids)
logger.info(f'selected edge: {edge_num}, op: {op_desc.name}')
selected_edges.append(new_edge)
# save diagnostic information to disk
expdir = get_expdir()
sns.heatmap(cov_top_ops, annot=True, fmt='.1g', cmap='coolwarm')
savename = os.path.join(
expdir, f'cell_{cell.desc.id}_node_{node_id}_cov.png')
plt.savefig(savename)
logger.info('')
return NodeDesc(selected_edges, node_desc.conv_params)