def __init__(self, parent):
# Save parent #
self.parent, self.pool = parent, parent
self.samples = parent.samples
# Paths #
self.base_dir = self.pool.p.groups_dir + self.short_name + '/'
self.p = AutoPaths(self.base_dir, self.all_paths)
# Super #
self.fwd_path = self.p.fwd_fastq
self.rev_path = self.p.rev_fastq
self.gziped = True if self.fwd_path.endswith('gz') else False
# Add assembly files #
self.assembled = Assembled(self)
self.unassembled = Unassembled(self)
self.children = (self.assembled, self.unassembled)
self.first = self.assembled
# Graphs #
self.graphs = [
getattr(outcome_plots, cls_name)(self)
for cls_name in outcome_plots.__all__
]
