def fileClassification(inputFile, modelName, modelType):
# Load classifier:
if not os.path.isfile(modelName):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
if modelType == 'svm':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadSVModel(modelName)
elif modelType == 'knn':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadKNNModel(modelName)
[Fs, x] = audioBasicIO.readAudioFile(inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * stWin), round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
curFV = (MidTermFeatures - MEAN) / STD # normalization
[Result, P] = classifierWrapper(Classifier, modelType, curFV) # classification
return Result, P, classNames
def fileClassification(inputFile, modelName, modelType):
# Load classifier:
if not os.path.isfile(modelName):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
if modelType == 'svm':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadSVModel(modelName)
elif modelType == 'knn':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadKNNModel(modelName)
[Fs, x] = audioBasicIO.readAudioFile(inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * stWin), round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
curFV = (MidTermFeatures - MEAN) / STD # normalization
[Result, P] = classifierWrapper(Classifier, modelType, curFV) # classification
return Result, P, classNames
def loaded_soundClassification(sound, Fs, model_type, *args):
# Load classifier:
classifier, MEAN, STD, classNames, mt_win, mt_step, st_win, st_step, compute_beat = args
x = numpy.fromstring(sound, numpy.int16)
if x.shape[0] / float(Fs) <= mt_win:
return (-1, -1, -1)
# feature extraction:
[mt_features, s, _] = aF.mtFeatureExtraction(x, Fs, mt_win * Fs,
mt_step * Fs,
round(Fs * st_win),
round(Fs * st_step))
mt_features = mt_features.mean(
axis=1) # long term averaging of mid-term statistics
if compute_beat:
[beat, beatConf] = aF.beatExtraction(s, st_step)
mt_features = numpy.append(mt_features, beat)
mt_features = numpy.append(mt_features, beatConf)
curFV = (mt_features - MEAN) / STD # normalization
[Result, P] = classifierWrapper(classifier, model_type,
curFV) # classification
return Result, P, classNames
def trainHMM_fromDir(dirPath, hmmModelName, mtWin, mtStep):
'''
This function trains a HMM model for segmentation-classification using a where WAV files and .segment (ground-truth files) are stored
ARGUMENTS:
- dirPath: the path of the data diretory
- hmmModelName: the name of the HMM model to be stored
- mtWin: mid-term window size
- mtStep: mid-term window step
RETURNS:
- hmm: an object to the resulting HMM
- classNames: a list of classNames
After training, hmm, classNames, along with the mtWin and mtStep values are stored in the hmmModelName file
'''
flagsAll = numpy.array([])
classesAll = []
for i, f in enumerate(glob.glob(dirPath + os.sep + '*.wav')): # for each WAV file
wavFile = f
gtFile = f.replace('.wav', '.segments') # open for annotated file
if not os.path.isfile(gtFile): # if current WAV file does not have annotation -> skip
continue
[segStart, segEnd, segLabels] = readSegmentGT(gtFile) # read GT data
flags, classNames = segs2flags(segStart, segEnd, segLabels, mtStep) # convert to flags
for c in classNames: # update classnames:
if c not in classesAll:
classesAll.append(c)
[Fs, x] = audioBasicIO.readAudioFile(wavFile) # read audio data
[F, _] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * 0.050), round(Fs * 0.050)) # feature extraction
lenF = F.shape[1]
lenL = len(flags)
MIN = min(lenF, lenL)
F = F[:, 0:MIN]
flags = flags[0:MIN]
flagsNew = []
for j, fl in enumerate(flags): # append features and labels
flagsNew.append(classesAll.index(classNames[flags[j]]))
flagsAll = numpy.append(flagsAll, numpy.array(flagsNew))
if i == 0:
Fall = F
else:
Fall = numpy.concatenate((Fall, F), axis=1)
startprob, transmat, means, cov = trainHMM_computeStatistics(Fall, flagsAll) # compute HMM statistics
hmm = sklearn.hmm.GaussianHMM(startprob.shape[0], "diag", startprob, transmat) # train HMM
hmm.means_ = means
hmm.covars_ = cov
fo = open(hmmModelName, "wb") # save HMM model
cPickle.dump(hmm, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(classesAll, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtWin, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtStep, fo, protocol=cPickle.HIGHEST_PROTOCOL)
fo.close()
return hmm, classesAll
def trainHMM_fromDir(dirPath, hmmModelName, mtWin, mtStep):
'''
This function trains a HMM model for segmentation-classification using a where WAV files and .segment (ground-truth files) are stored
ARGUMENTS:
- dirPath: the path of the data diretory
- hmmModelName: the name of the HMM model to be stored
- mtWin: mid-term window size
- mtStep: mid-term window step
RETURNS:
- hmm: an object to the resulting HMM
- classNames: a list of classNames
After training, hmm, classNames, along with the mtWin and mtStep values are stored in the hmmModelName file
'''
flagsAll = numpy.array([])
classesAll = []
for i, f in enumerate(glob.glob(dirPath + os.sep + '*.wav')): # for each WAV file
wavFile = f
gtFile = f.replace('.wav', '.segments') # open for annotated file
if not os.path.isfile(gtFile): # if current WAV file does not have annotation -> skip
continue
[segStart, segEnd, segLabels] = readSegmentGT(gtFile) # read GT data
flags, classNames = segs2flags(segStart, segEnd, segLabels, mtStep) # convert to flags
for c in classNames: # update classnames:
if c not in classesAll:
classesAll.append(c)
[Fs, x] = audioBasicIO.readAudioFile(wavFile) # read audio data
[F, _] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * 0.050), round(Fs * 0.050)) # feature extraction
lenF = F.shape[1]
lenL = len(flags)
MIN = min(lenF, lenL)
F = F[:, 0:MIN]
flags = flags[0:MIN]
flagsNew = []
for j, fl in enumerate(flags): # append features and labels
flagsNew.append(classesAll.index(classNames[flags[j]]))
flagsAll = numpy.append(flagsAll, numpy.array(flagsNew))
if i == 0:
Fall = F
else:
Fall = numpy.concatenate((Fall, F), axis=1)
startprob, transmat, means, cov = trainHMM_computeStatistics(Fall, flagsAll) # compute HMM statistics
hmm = hmmlearn.hmm.GaussianHMM(startprob.shape[0], "diag", startprob, transmat) # train HMM
hmm.means_ = means
hmm.covars_ = cov
fo = open(hmmModelName, "wb") # save HMM model
cPickle.dump(hmm, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(classesAll, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtWin, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtStep, fo, protocol=cPickle.HIGHEST_PROTOCOL)
fo.close()
return hmm, classesAll
def fileRegression(inputFile, modelName, modelType):
# Load classifier:
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
regressionModels = glob.glob(modelName + "_*")
regressionModels2 = []
for r in regressionModels:
if r[-5::] != "MEANS":
regressionModels2.append(r)
regressionModels = regressionModels2
regressionNames = []
for r in regressionModels:
regressionNames.append(r[r.rfind("_") + 1::])
# FEATURE EXTRACTION
# LOAD ONLY THE FIRST MODEL (for mtWin, etc)
if modelType == 'svm':
[_, _, _, mtWin, mtStep, stWin, stStep,
computeBEAT] = loadSVModel(regressionModels[0], True)
elif modelType == 'knn':
[_, _, _, mtWin, mtStep, stWin, stStep,
computeBEAT] = loadKNNModel(regressionModels[0], True)
[Fs, x] = audioBasicIO.readAudioFile(
inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs,
mtWin * Fs, mtStep * Fs,
round(Fs * stWin),
round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(
axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
# REGRESSION
R = []
for ir, r in enumerate(regressionModels):
if not os.path.isfile(r):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if modelType == 'svm':
[Model, MEAN, STD, mtWin, mtStep, stWin, stStep,
computeBEAT] = loadSVModel(r, True)
elif modelType == 'knn':
[Model, MEAN, STD, mtWin, mtStep, stWin, stStep,
computeBEAT] = loadKNNModel(r, True)
curFV = (MidTermFeatures - MEAN) / STD
# normalization
R.append(regressionWrapper(Model, modelType, curFV)) # classification
return R, regressionNames
def hmmSegmentation(wavFileName, hmmModelName, PLOT=False, gtFileName=""):
if wavFileName is str:
[Fs, x] = audioBasicIO.readAudioFile(wavFileName) # load input file
else:
Fs = 44100
x = wavFileName
x = audioBasicIO.stereo2mono(x)
try:
fo = open(hmmModelName, "rb")
except IOError:
print "didn't find file"
return
try:
hmm = cPickle.load(fo)
classesAll = cPickle.load(fo)
mtWin = cPickle.load(fo)
mtStep = cPickle.load(fo)
except:
fo.close()
fo.close()
#Features = audioFeatureExtraction.stFeatureExtraction(x, Fs, 0.050*Fs, 0.050*Fs); # feature extraction
[Features, _] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs,
round(Fs * 0.050),
round(Fs * 0.050))
flagsInd = hmm.predict(Features.T) # apply model
#for i in range(len(flagsInd)):
# if classesAll[flagsInd[i]]=="silence":
# flagsInd[i]=classesAll.index("speech")
# plot results
if os.path.isfile(gtFileName):
[segStart, segEnd, segLabels] = readSegmentGT(gtFileName)
flagsGT, classNamesGT = segs2flags(segStart, segEnd, segLabels, mtStep)
flagsGTNew = []
for j, fl in enumerate(flagsGT): # "align" labels with GT
if classNamesGT[flagsGT[j]] in classesAll:
flagsGTNew.append(classesAll.index(classNamesGT[flagsGT[j]]))
else:
flagsGTNew.append(-1)
CM = numpy.zeros((len(classNamesGT), len(classNamesGT)))
flagsIndGT = numpy.array(flagsGTNew)
for i in range(min(flagsInd.shape[0], flagsIndGT.shape[0])):
CM[int(flagsIndGT[i]), int(flagsInd[i])] += 1
else:
flagsIndGT = numpy.array([])
acc = plotSegmentationResults(flagsInd, flagsIndGT, classesAll, mtStep,
not PLOT)
if acc >= 0:
print "Overall Accuracy: {0:.2f}".format(acc)
return (flagsInd, classNamesGT, acc, CM)
else:
return (flagsInd, classesAll, -1, -1)
def fileRegression(inputFile, model_name, model_type):
# Load classifier:
if not os.path.isfile(inputFile):
print("fileClassification: wav file not found!")
return (-1, -1, -1)
regression_models = glob.glob(model_name + "_*")
regression_models2 = []
for r in regression_models:
if r[-5::] != "MEANS":
regression_models2.append(r)
regression_models = regression_models2
regression_names = []
for r in regression_models:
regression_names.append(r[r.rfind("_") + 1::])
# FEATURE EXTRACTION
# LOAD ONLY THE FIRST MODEL (for mt_win, etc)
if model_type == 'svm' or model_type == "svm_rbf" or model_type == 'randomforest':
[_, _, _, mt_win, mt_step, st_win, st_step,
compute_beat] = load_model(regression_models[0], True)
[Fs, x] = audioBasicIO.readAudioFile(
inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
# feature extraction:
[mt_features, s, _] = aF.mtFeatureExtraction(x, Fs, mt_win * Fs,
mt_step * Fs,
round(Fs * st_win),
round(Fs * st_step))
mt_features = mt_features.mean(
axis=1) # long term averaging of mid-term statistics
if compute_beat:
[beat, beatConf] = aF.beatExtraction(s, st_step)
mt_features = numpy.append(mt_features, beat)
mt_features = numpy.append(mt_features, beatConf)
# REGRESSION
R = []
for ir, r in enumerate(regression_models):
if not os.path.isfile(r):
print("fileClassification: input model_name not found!")
return (-1, -1, -1)
if model_type == 'svm' or model_type == "svm_rbf" \
or model_type == 'randomforest':
[model, MEAN, STD, mt_win, mt_step, st_win, st_step, compute_beat] = \
load_model(r, True)
curFV = (mt_features - MEAN) / STD # normalization
R.append(regressionWrapper(model, model_type, curFV)) # classification
return R, regression_names
def hmmSegmentation(wav_file_name,
hmm_model_name,
plot_res=False,
gt_file_name=""):
[fs, x] = audioBasicIO.readAudioFile(wav_file_name)
try:
fo = open(hmm_model_name, "rb")
except IOError:
print("didn't find file")
return
try:
hmm = cPickle.load(fo)
classes_all = cPickle.load(fo)
mt_win = cPickle.load(fo)
mt_step = cPickle.load(fo)
except:
fo.close()
fo.close()
[Features, _, _] = aF.mtFeatureExtraction(x, fs, mt_win * fs, mt_step * fs,
round(fs * 0.050),
round(fs * 0.050))
flags_ind = hmm.predict(Features.T) # apply model
if os.path.isfile(gt_file_name):
[seg_start, seg_end, seg_labs] = readSegmentGT(gt_file_name)
flags_gt, class_names_gt = segs2flags(seg_start, seg_end, seg_labs,
mt_step)
flagsGTNew = []
for j, fl in enumerate(flags_gt):
# "align" labels with GT
if class_names_gt[flags_gt[j]] in classes_all:
flagsGTNew.append(
classes_all.index(class_names_gt[flags_gt[j]]))
else:
flagsGTNew.append(-1)
cm = numpy.zeros((len(classes_all), len(classes_all)))
flags_ind_gt = numpy.array(flagsGTNew)
for i in range(min(flags_ind.shape[0], flags_ind_gt.shape[0])):
cm[int(flags_ind_gt[i]), int(flags_ind[i])] += 1
else:
flags_ind_gt = numpy.array([])
acc = plotSegmentationResults(flags_ind, flags_ind_gt, classes_all,
mt_step, not plot_res)
if acc >= 0:
print("Overall Accuracy: {0:.2f}".format(acc))
return (flags_ind, class_names_gt, acc, cm)
else:
return (flags_ind, classes_all, -1, -1)
def featureExtraction(dirName):
types = (dirName + os.sep + '*.wav', ) # the tuple of file types
filesToProcess = []
for files in types:
filesToProcess.extend(glob.glob(files))
for f in filesToProcess:
print f
[Fs, x] = audioBasicIO.readAudioFile(f)
Mt, St = aF.mtFeatureExtraction(x, Fs, 1 * Fs, 1 * Fs, 0.500 * Fs,
0.500 * Fs)
F = St
BPM, ratio = aF.beatExtraction(F, 0.100, False)
print "Beat: {0:d} bpm ".format(int(BPM))
print "Ratio: {0:.2f} ".format(ratio)
print("Storing features to monogodb")
storeFeaturesToMongoDb(F, BPM, f)
def fileRegression(inputFile, modelName, modelType):
# Load classifier:
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
regressionModels = glob.glob(modelName + "_*")
regressionModels2 = []
for r in regressionModels:
if r[-5::] != "MEANS":
regressionModels2.append(r)
regressionModels = regressionModels2
regressionNames = []
for r in regressionModels:
regressionNames.append(r[r.rfind("_") + 1::])
# FEATURE EXTRACTION
# LOAD ONLY THE FIRST MODEL (for mtWin, etc)
if modelType == 'svm':
[_, _, _, mtWin, mtStep, stWin, stStep, computeBEAT] = loadSVModel(regressionModels[0], True)
elif modelType == 'knn':
[_, _, _, mtWin, mtStep, stWin, stStep, computeBEAT] = loadKNNModel(regressionModels[0], True)
[Fs, x] = audioBasicIO.readAudioFile(inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * stWin), round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
# REGRESSION
R = []
for ir, r in enumerate(regressionModels):
if not os.path.isfile(r):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if modelType == 'svm':
[Model, MEAN, STD, mtWin, mtStep, stWin, stStep, computeBEAT] = loadSVModel(r, True)
elif modelType == 'knn':
[Model, MEAN, STD, mtWin, mtStep, stWin, stStep, computeBEAT] = loadKNNModel(r, True)
curFV = (MidTermFeatures - MEAN) / STD # normalization
R.append(regressionWrapper(Model, modelType, curFV)) # classification
return R, regressionNames
def hmmSegmentation(wavFileName, hmmModelName, PLOT=False, gtFileName=""):
[Fs, x] = audioBasicIO.readAudioFile(wavFileName) # read audio data
try:
fo = open(hmmModelName, "rb")
except IOError:
print "didn't find file"
return
try:
hmm = cPickle.load(fo)
classesAll = cPickle.load(fo)
mtWin = cPickle.load(fo)
mtStep = cPickle.load(fo)
except:
fo.close()
fo.close()
#Features = audioFeatureExtraction.stFeatureExtraction(x, Fs, 0.050*Fs, 0.050*Fs); # feature extraction
[Features, _] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * 0.050), round(Fs * 0.050))
flagsInd = hmm.predict(Features.T) # apply model
#for i in range(len(flagsInd)):
# if classesAll[flagsInd[i]]=="silence":
# flagsInd[i]=classesAll.index("speech")
# plot results
if os.path.isfile(gtFileName):
[segStart, segEnd, segLabels] = readSegmentGT(gtFileName)
flagsGT, classNamesGT = segs2flags(segStart, segEnd, segLabels, mtStep)
flagsGTNew = []
for j, fl in enumerate(flagsGT): # "align" labels with GT
if classNamesGT[flagsGT[j]] in classesAll:
flagsGTNew.append(classesAll.index(classNamesGT[flagsGT[j]]))
else:
flagsGTNew.append(-1)
CM = numpy.zeros((len(classNamesGT), len(classNamesGT)))
flagsIndGT = numpy.array(flagsGTNew)
for i in range(min(flagsInd.shape[0], flagsIndGT.shape[0])):
CM[int(flagsIndGT[i]),int(flagsInd[i])] += 1
else:
flagsIndGT = numpy.array([])
acc = plotSegmentationResults(flagsInd, flagsIndGT, classesAll, mtStep, not PLOT)
if acc >= 0:
print "Overall Accuracy: {0:.2f}".format(acc)
return (flagsInd, classNamesGT, acc, CM)
else:
return (flagsInd, classesAll, -1, -1)
def fileClassification(inputFile, model_name, model_type):
# Load classifier:
if not os.path.isfile(model_name):
print("fileClassification: input model_name not found!")
return (-1, -1, -1)
if not os.path.isfile(inputFile):
print("fileClassification: wav file not found!")
return (-1, -1, -1)
if model_type == 'knn':
[
classifier, MEAN, STD, classNames, mt_win, mt_step, st_win,
st_step, compute_beat
] = load_model_knn(model_name)
else:
[
classifier, MEAN, STD, classNames, mt_win, mt_step, st_win,
st_step, compute_beat
] = load_model(model_name)
[Fs, x] = audioBasicIO.readAudioFile(
inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
if isinstance(x, int): # audio file IO problem
return (-1, -1, -1)
if x.shape[0] / float(Fs) <= mt_win:
return (-1, -1, -1)
# feature extraction:
[mt_features, s, _] = aF.mtFeatureExtraction(x, Fs, mt_win * Fs,
mt_step * Fs,
round(Fs * st_win),
round(Fs * st_step))
mt_features = mt_features.mean(
axis=1) # long term averaging of mid-term statistics
if compute_beat:
[beat, beatConf] = aF.beatExtraction(s, st_step)
mt_features = numpy.append(mt_features, beat)
mt_features = numpy.append(mt_features, beatConf)
curFV = (mt_features - MEAN) / STD # normalization
[Result, P] = classifierWrapper(classifier, model_type,
curFV) # classification
return Result, P, classNames
def trainHMM_fromFile(wavFile, gtFile, hmmModelName, mtWin, mtStep):
'''
This function trains a HMM model for segmentation-classification using a single annotated audio file
ARGUMENTS:
- wavFile: the path of the audio filename
- gtFile: the path of the ground truth filename
(a csv file of the form <segment start in seconds>,<segment end in seconds>,<segment label> in each row
- hmmModelName: the name of the HMM model to be stored
- mtWin: mid-term window size
- mtStep: mid-term window step
RETURNS:
- hmm: an object to the resulting HMM
- classNames: a list of classNames
After training, hmm, classNames, along with the mtWin and mtStep values are stored in the hmmModelName file
'''
[segStart, segEnd,
segLabels] = readSegmentGT(gtFile) # read ground truth data
flags, classNames = segs2flags(
segStart, segEnd, segLabels,
mtStep) # convert to fix-sized sequence of flags
[Fs, x] = audioBasicIO.readAudioFile(wavFile) # read audio data
#F = aF.stFeatureExtraction(x, Fs, 0.050*Fs, 0.050*Fs);
[F, _] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs,
round(Fs * 0.050),
round(Fs * 0.050)) # feature extraction
startprob, transmat, means, cov = trainHMM_computeStatistics(
F, flags) # compute HMM statistics (priors, transition matrix, etc)
hmm = hmmlearn.hmm.GaussianHMM(startprob.shape[0], "diag") # hmm training
hmm.startprob_ = startprob
hmm.transmat_ = transmat
hmm.means_ = means
hmm.covars_ = cov
fo = open(hmmModelName, "wb") # output to file
cPickle.dump(hmm, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(classNames, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtWin, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtStep, fo, protocol=cPickle.HIGHEST_PROTOCOL)
fo.close()
return hmm, classNames
def fileClassification(inputFile, modelName, modelType):
# Load classifier:
if not os.path.isfile(modelName):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
if (modelType) == 'svm' or (modelType == 'svm_rbf'):
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadSVModel(modelName)
elif modelType == 'knn':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadKNNModel(modelName)
elif modelType == 'randomforest':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadRandomForestModel(modelName)
elif modelType == 'gradientboosting':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadGradientBoostingModel(modelName)
elif modelType == 'extratrees':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadExtraTreesModel(modelName)
[Fs, x] = audioBasicIO.readAudioFile(inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
if isinstance(x, int): # audio file IO problem
return (-1, -1, -1)
if x.shape[0] / float(Fs) <= mtWin:
return (-1, -1, -1)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * stWin), round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
curFV = (MidTermFeatures - MEAN) / STD # normalization
[Result, P] = classifierWrapper(Classifier, modelType, curFV) # classification
return Result, P, classNames
def fileClassification(inputFile, modelName, modelType):
# Load classifier:
if not os.path.isfile(modelName):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
if (modelType) == 'svm' or (modelType == 'svm_rbf'):
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadSVModel(modelName)
elif modelType == 'knn':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadKNNModel(modelName)
elif modelType == 'randomforest':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadRandomForestModel(modelName)
elif modelType == 'gradientboosting':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadGradientBoostingModel(modelName)
elif modelType == 'extratrees':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = loadExtraTreesModel(modelName)
[Fs, x] = audioBasicIO.readAudioFile(inputFile) # read audio file and convert to mono
x = audioBasicIO.stereo2mono(x)
if isinstance(x, int): # audio file IO problem
return (-1, -1, -1)
if x.shape[0] / float(Fs) <= mtWin:
return (-1, -1, -1)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * stWin), round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
curFV = (MidTermFeatures - MEAN) / STD # normalization
[Result, P] = classifierWrapper(Classifier, modelType, curFV) # classification
return Result, P, classNames
def trainHMM_fromFile(wavFile, gtFile, hmmModelName, mtWin, mtStep):
"""
This function trains a HMM model for segmentation-classification using a single annotated audio file
ARGUMENTS:
- wavFile: the path of the audio filename
- gtFile: the path of the ground truth filename
(a csv file of the form <segment start in seconds>,<segment end in seconds>,<segment label> in each row
- hmmModelName: the name of the HMM model to be stored
- mtWin: mid-term window size
- mtStep: mid-term window step
RETURNS:
- hmm: an object to the resulting HMM
- classNames: a list of classNames
After training, hmm, classNames, along with the mtWin and mtStep values are stored in the hmmModelName file
"""
[segStart, segEnd, segLabels] = readSegmentGT(gtFile) # read ground truth data
flags, classNames = segs2flags(segStart, segEnd, segLabels, mtStep) # convert to fix-sized sequence of flags
[Fs, x] = audioBasicIO.readAudioFile(wavFile) # read audio data
# F = aF.stFeatureExtraction(x, Fs, 0.050*Fs, 0.050*Fs);
[F, _] = aF.mtFeatureExtraction(
x, Fs, mtWin * Fs, mtStep * Fs, round(Fs * 0.050), round(Fs * 0.050)
) # feature extraction
startprob, transmat, means, cov = trainHMM_computeStatistics(
F, flags
) # compute HMM statistics (priors, transition matrix, etc)
hmm = sklearn.hmm.GaussianHMM(startprob.shape[0], "diag", startprob, transmat) # hmm training
hmm.means_ = means
hmm.covars_ = cov
fo = open(hmmModelName, "wb") # output to file
cPickle.dump(hmm, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(classNames, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtWin, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mtStep, fo, protocol=cPickle.HIGHEST_PROTOCOL)
fo.close()
return hmm, classNames
def soundClassification(sound, Fs, model_name, model_type):
# Load classifier:
if not os.path.isfile(model_name):
print("fileClassification: input model_name not found!")
return (-1, -1, -1)
if model_type == 'knn':
[
classifier, MEAN, STD, classNames, mt_win, mt_step, st_win,
st_step, compute_beat
] = load_model_knn(model_name)
else:
[
classifier, MEAN, STD, classNames, mt_win, mt_step, st_win,
st_step, compute_beat
] = load_model(model_name)
x = numpy.fromstring(sound, numpy.int16)
if x.shape[0] / float(Fs) <= mt_win:
return (-1, -1, -1)
# feature extraction:
[mt_features, s, _] = aF.mtFeatureExtraction(x, Fs, mt_win * Fs,
mt_step * Fs,
round(Fs * st_win),
round(Fs * st_step))
mt_features = mt_features.mean(
axis=1) # long term averaging of mid-term statistics
if compute_beat:
[beat, beatConf] = aF.beatExtraction(s, st_step)
mt_features = numpy.append(mt_features, beat)
mt_features = numpy.append(mt_features, beatConf)
curFV = (mt_features - MEAN) / STD # normalization
[Result, P] = classifierWrapper(classifier, model_type,
curFV) # classification
return Result, P, classNames
def trainHMM_fromFile(wav_file, gt_file, hmm_model_name, mt_win, mt_step):
'''
This function trains a HMM model for segmentation-classification using a single annotated audio file
ARGUMENTS:
- wav_file: the path of the audio filename
- gt_file: the path of the ground truth filename
(a csv file of the form <segment start in seconds>,<segment end in seconds>,<segment label> in each row
- hmm_model_name: the name of the HMM model to be stored
- mt_win: mid-term window size
- mt_step: mid-term window step
RETURNS:
- hmm: an object to the resulting HMM
- class_names: a list of class_names
After training, hmm, class_names, along with the mt_win and mt_step values are stored in the hmm_model_name file
'''
[seg_start, seg_end, seg_labs] = readSegmentGT(gt_file)
flags, class_names = segs2flags(seg_start, seg_end, seg_labs, mt_step)
[fs, x] = audioBasicIO.readAudioFile(wav_file)
[F, _, _] = aF.mtFeatureExtraction(x, fs, mt_win * fs, mt_step * fs,
round(fs * 0.050), round(fs * 0.050))
start_prob, transmat, means, cov = trainHMM_computeStatistics(F, flags)
hmm = hmmlearn.hmm.GaussianHMM(start_prob.shape[0], "diag")
hmm.startprob_ = start_prob
hmm.transmat_ = transmat
hmm.means_ = means
hmm.covars_ = cov
fo = open(hmm_model_name, "wb")
cPickle.dump(hmm, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(class_names, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mt_win, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mt_step, fo, protocol=cPickle.HIGHEST_PROTOCOL)
fo.close()
return hmm, class_names
def speakerDiarization(filename,
n_speakers,
mt_size=2.0,
mt_step=0.2,
st_win=0.05,
lda_dim=35,
plot_res=False):
'''
ARGUMENTS:
- filename: the name of the WAV file to be analyzed
- n_speakers the number of speakers (clusters) in the recording (<=0 for unknown)
- mt_size (opt) mid-term window size
- mt_step (opt) mid-term window step
- st_win (opt) short-term window size
- lda_dim (opt) LDA dimension (0 for no LDA)
- plot_res (opt) 0 for not plotting the results 1 for plottingy
'''
[fs, x] = audioBasicIO.readAudioFile(filename)
x = audioBasicIO.stereo2mono(x)
duration = len(x) / fs
# [classifier_1, MEAN1, STD1, classNames1, mtWin1, mtStep1, stWin1, stStep1, computeBEAT1] = aT.load_model_knn(os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "knnSpeakerAll"))
# [classifier_2, MEAN2, STD2, classNames2, mtWin2, mtStep2, stWin2, stStep2, computeBEAT2] = aT.load_model_knn(os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "knnSpeakerFemaleMale"))
[
classifier_1, MEAN1, STD1, classNames1, mtWin1, mtStep1, stWin1,
stStep1, computeBEAT1
] = aT.load_model_knn("data/knnSpeakerAll")
[
classifier_2, MEAN2, STD2, classNames2, mtWin2, mtStep2, stWin2,
stStep2, computeBEAT2
] = aT.load_model_knn("data/knnSpeakerFemaleMale")
[mt_feats, st_feats, _] = aF.mtFeatureExtraction(x, fs, mt_size * fs,
mt_step * fs,
round(fs * st_win),
round(fs * st_win * 0.5))
MidTermFeatures2 = numpy.zeros(
(mt_feats.shape[0] + len(classNames1) + len(classNames2),
mt_feats.shape[1]))
for i in range(mt_feats.shape[1]):
cur_f1 = (mt_feats[:, i] - MEAN1) / STD1
cur_f2 = (mt_feats[:, i] - MEAN2) / STD2
[res, P1] = aT.classifierWrapper(classifier_1, "knn", cur_f1)
[res, P2] = aT.classifierWrapper(classifier_2, "knn", cur_f2)
MidTermFeatures2[0:mt_feats.shape[0], i] = mt_feats[:, i]
MidTermFeatures2[mt_feats.shape[0]:mt_feats.shape[0] +
len(classNames1), i] = P1 + 0.0001
MidTermFeatures2[mt_feats.shape[0] + len(classNames1)::,
i] = P2 + 0.0001
mt_feats = MidTermFeatures2 # TODO
iFeaturesSelect = [
8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 41, 42, 43, 44, 45,
46, 47, 48, 49, 50, 51, 52, 53
]
mt_feats = mt_feats[iFeaturesSelect, :]
(mt_feats_norm, MEAN, STD) = aT.normalizeFeatures([mt_feats.T])
mt_feats_norm = mt_feats_norm[0].T
n_wins = mt_feats.shape[1]
# remove outliers:
dist_all = numpy.sum(distance.squareform(distance.pdist(mt_feats_norm.T)),
axis=0)
m_dist_all = numpy.mean(dist_all)
i_non_outliers = numpy.nonzero(dist_all < 1.2 * m_dist_all)[0]
# TODO: Combine energy threshold for outlier removal:
#EnergyMin = numpy.min(mt_feats[1,:])
#EnergyMean = numpy.mean(mt_feats[1,:])
#Thres = (1.5*EnergyMin + 0.5*EnergyMean) / 2.0
#i_non_outliers = numpy.nonzero(mt_feats[1,:] > Thres)[0]
#print i_non_outliers
perOutLier = (100.0 * (n_wins - i_non_outliers.shape[0])) / n_wins
mt_feats_norm_or = mt_feats_norm
mt_feats_norm = mt_feats_norm[:, i_non_outliers]
# LDA dimensionality reduction:
if lda_dim > 0:
#[mt_feats_to_red, _, _] = aF.mtFeatureExtraction(x, fs, mt_size * fs, st_win * fs, round(fs*st_win), round(fs*st_win));
# extract mid-term features with minimum step:
mt_win_ratio = int(round(mt_size / st_win))
mt_step_ratio = int(round(st_win / st_win))
mt_feats_to_red = []
num_of_features = len(st_feats)
num_of_stats = 2
#for i in range(num_of_stats * num_of_features + 1):
for i in range(num_of_stats * num_of_features):
mt_feats_to_red.append([])
for i in range(
num_of_features): # for each of the short-term features:
curPos = 0
N = len(st_feats[i])
while (curPos < N):
N1 = curPos
N2 = curPos + mt_win_ratio
if N2 > N:
N2 = N
curStFeatures = st_feats[i][N1:N2]
mt_feats_to_red[i].append(numpy.mean(curStFeatures))
mt_feats_to_red[i + num_of_features].append(
numpy.std(curStFeatures))
curPos += mt_step_ratio
mt_feats_to_red = numpy.array(mt_feats_to_red)
mt_feats_to_red_2 = numpy.zeros(
(mt_feats_to_red.shape[0] + len(classNames1) + len(classNames2),
mt_feats_to_red.shape[1]))
for i in range(mt_feats_to_red.shape[1]):
cur_f1 = (mt_feats_to_red[:, i] - MEAN1) / STD1
cur_f2 = (mt_feats_to_red[:, i] - MEAN2) / STD2
[res, P1] = aT.classifierWrapper(classifier_1, "knn", cur_f1)
[res, P2] = aT.classifierWrapper(classifier_2, "knn", cur_f2)
mt_feats_to_red_2[0:mt_feats_to_red.shape[0],
i] = mt_feats_to_red[:, i]
mt_feats_to_red_2[
mt_feats_to_red.shape[0]:mt_feats_to_red.shape[0] +
len(classNames1), i] = P1 + 0.0001
mt_feats_to_red_2[mt_feats_to_red.shape[0] + len(classNames1)::,
i] = P2 + 0.0001
mt_feats_to_red = mt_feats_to_red_2
mt_feats_to_red = mt_feats_to_red[iFeaturesSelect, :]
#mt_feats_to_red += numpy.random.rand(mt_feats_to_red.shape[0], mt_feats_to_red.shape[1]) * 0.0000010
(mt_feats_to_red, MEAN,
STD) = aT.normalizeFeatures([mt_feats_to_red.T])
mt_feats_to_red = mt_feats_to_red[0].T
#dist_all = numpy.sum(distance.squareform(distance.pdist(mt_feats_to_red.T)), axis=0)
#m_dist_all = numpy.mean(dist_all)
#iNonOutLiers2 = numpy.nonzero(dist_all < 3.0*m_dist_all)[0]
#mt_feats_to_red = mt_feats_to_red[:, iNonOutLiers2]
Labels = numpy.zeros((mt_feats_to_red.shape[1], ))
LDAstep = 1.0
LDAstepRatio = LDAstep / st_win
#print LDAstep, LDAstepRatio
for i in range(Labels.shape[0]):
Labels[i] = int(i * st_win / LDAstepRatio)
clf = sklearn.discriminant_analysis.LinearDiscriminantAnalysis(
n_components=lda_dim)
clf.fit(mt_feats_to_red.T, Labels)
mt_feats_norm = (clf.transform(mt_feats_norm.T)).T
if n_speakers <= 0:
s_range = range(2, 10)
else:
s_range = [n_speakers]
clsAll = []
sil_all = []
centersAll = []
for iSpeakers in s_range:
k_means = sklearn.cluster.KMeans(n_clusters=iSpeakers)
k_means.fit(mt_feats_norm.T)
cls = k_means.labels_
means = k_means.cluster_centers_
# Y = distance.squareform(distance.pdist(mt_feats_norm.T))
clsAll.append(cls)
centersAll.append(means)
sil_1 = []
sil_2 = []
for c in range(iSpeakers):
# for each speaker (i.e. for each extracted cluster)
clust_per_cent = numpy.nonzero(cls == c)[0].shape[0] / \
float(len(cls))
if clust_per_cent < 0.020:
sil_1.append(0.0)
sil_2.append(0.0)
else:
# get subset of feature vectors
mt_feats_norm_temp = mt_feats_norm[:, cls == c]
# compute average distance between samples
# that belong to the cluster (a values)
Yt = distance.pdist(mt_feats_norm_temp.T)
sil_1.append(numpy.mean(Yt) * clust_per_cent)
silBs = []
for c2 in range(iSpeakers):
# compute distances from samples of other clusters
if c2 != c:
clust_per_cent_2 = numpy.nonzero(cls == c2)[0].shape[0] /\
float(len(cls))
MidTermFeaturesNormTemp2 = mt_feats_norm[:, cls == c2]
Yt = distance.cdist(mt_feats_norm_temp.T,
MidTermFeaturesNormTemp2.T)
silBs.append(
numpy.mean(Yt) *
(clust_per_cent + clust_per_cent_2) / 2.0)
silBs = numpy.array(silBs)
# ... and keep the minimum value (i.e.
# the distance from the "nearest" cluster)
sil_2.append(min(silBs))
sil_1 = numpy.array(sil_1)
sil_2 = numpy.array(sil_2)
sil = []
for c in range(iSpeakers):
# for each cluster (speaker) compute silhouette
sil.append(
(sil_2[c] - sil_1[c]) / (max(sil_2[c], sil_1[c]) + 0.00001))
# keep the AVERAGE SILLOUETTE
sil_all.append(numpy.mean(sil))
imax = numpy.argmax(sil_all)
# optimal number of clusters
nSpeakersFinal = s_range[imax]
# generate the final set of cluster labels
# (important: need to retrieve the outlier windows:
# this is achieved by giving them the value of their
# nearest non-outlier window)
cls = numpy.zeros((n_wins, ))
for i in range(n_wins):
j = numpy.argmin(numpy.abs(i - i_non_outliers))
cls[i] = clsAll[imax][j]
# Post-process method 1: hmm smoothing
for i in range(1):
# hmm training
start_prob, transmat, means, cov = \
trainHMM_computeStatistics(mt_feats_norm_or, cls)
hmm = hmmlearn.hmm.GaussianHMM(start_prob.shape[0], "diag")
hmm.startprob_ = start_prob
hmm.transmat_ = transmat
hmm.means_ = means
hmm.covars_ = cov
cls = hmm.predict(mt_feats_norm_or.T)
# Post-process method 2: median filtering:
cls = scipy.signal.medfilt(cls, 13)
cls = scipy.signal.medfilt(cls, 11)
sil = sil_all[imax]
class_names = ["speaker{0:d}".format(c) for c in range(nSpeakersFinal)]
# load ground-truth if available
gt_file = filename.replace('.wav', '.segments')
# if groundturh exists
if os.path.isfile(gt_file):
[seg_start, seg_end, seg_labs] = readSegmentGT(gt_file)
flags_gt, class_names_gt = segs2flags(seg_start, seg_end, seg_labs,
mt_step)
if plot_res:
fig = plt.figure()
if n_speakers > 0:
ax1 = fig.add_subplot(111)
else:
ax1 = fig.add_subplot(211)
ax1.set_yticks(numpy.array(range(len(class_names))))
ax1.axis((0, duration, -1, len(class_names)))
ax1.set_yticklabels(class_names)
ax1.plot(numpy.array(range(len(cls))) * mt_step + mt_step / 2.0, cls)
if os.path.isfile(gt_file):
if plot_res:
ax1.plot(
numpy.array(range(len(flags_gt))) * mt_step + mt_step / 2.0,
flags_gt, 'r')
purity_cluster_m, purity_speaker_m = \
evaluateSpeakerDiarization(cls, flags_gt)
print("{0:.1f}\t{1:.1f}".format(100 * purity_cluster_m,
100 * purity_speaker_m))
if plot_res:
plt.title("Cluster purity: {0:.1f}% - "
"Speaker purity: {1:.1f}%".format(
100 * purity_cluster_m, 100 * purity_speaker_m))
if plot_res:
plt.xlabel("time (seconds)")
#print s_range, sil_all
if n_speakers <= 0:
plt.subplot(212)
plt.plot(s_range, sil_all)
plt.xlabel("number of clusters")
plt.ylabel("average clustering's sillouette")
#plt.show()
plt.savefig('output/outImg.jpg')
return cls
def mtFileClassification(input_file,
model_name,
model_type,
plot_results=False,
gt_file=""):
'''
This function performs mid-term classification of an audio stream.
Towards this end, supervised knowledge is used, i.e. a pre-trained classifier.
ARGUMENTS:
- input_file: path of the input WAV file
- model_name: name of the classification model
- model_type: svm or knn depending on the classifier type
- plot_results: True if results are to be plotted using
matplotlib along with a set of statistics
RETURNS:
- segs: a sequence of segment's endpoints: segs[i] is the
endpoint of the i-th segment (in seconds)
- classes: a sequence of class flags: class[i] is the
class ID of the i-th segment
'''
if not os.path.isfile(model_name):
print("mtFileClassificationError: input model_type not found!")
return (-1, -1, -1, -1)
# Load classifier:
if model_type == "knn":
[classifier, MEAN, STD, class_names, mt_win, mt_step, st_win, st_step, compute_beat] = \
aT.load_model_knn(model_name)
else:
[
classifier, MEAN, STD, class_names, mt_win, mt_step, st_win,
st_step, compute_beat
] = aT.load_model(model_name)
if compute_beat:
print("Model " + model_name + " contains long-term music features "
"(beat etc) and cannot be used in "
"segmentation")
return (-1, -1, -1, -1)
[fs, x] = audioBasicIO.readAudioFile(input_file) # load input file
if fs == -1: # could not read file
return (-1, -1, -1, -1)
x = audioBasicIO.stereo2mono(x) # convert stereo (if) to mono
duration = len(x) / fs
# mid-term feature extraction:
[mt_feats, _, _] = aF.mtFeatureExtraction(x, fs, mt_win * fs, mt_step * fs,
round(fs * st_win),
round(fs * st_step))
flags = []
Ps = []
flags_ind = []
for i in range(
mt_feats.shape[1]
): # for each feature vector (i.e. for each fix-sized segment):
cur_fv = (mt_feats[:, i] -
MEAN) / STD # normalize current feature vector
[res, P] = aT.classifierWrapper(classifier, model_type,
cur_fv) # classify vector
flags_ind.append(res)
flags.append(class_names[int(res)]) # update class label matrix
Ps.append(numpy.max(P)) # update probability matrix
flags_ind = numpy.array(flags_ind)
# 1-window smoothing
for i in range(1, len(flags_ind) - 1):
if flags_ind[i - 1] == flags_ind[i + 1]:
flags_ind[i] = flags_ind[i + 1]
# convert fix-sized flags to segments and classes
(segs, classes) = flags2segs(flags, mt_step)
segs[-1] = len(x) / float(fs)
# Load grount-truth:
if os.path.isfile(gt_file):
[seg_start_gt, seg_end_gt, seg_l_gt] = readSegmentGT(gt_file)
flags_gt, class_names_gt = segs2flags(seg_start_gt, seg_end_gt,
seg_l_gt, mt_step)
flags_ind_gt = []
for j, fl in enumerate(flags_gt):
# "align" labels with GT
if class_names_gt[flags_gt[j]] in class_names:
flags_ind_gt.append(
class_names.index(class_names_gt[flags_gt[j]]))
else:
flags_ind_gt.append(-1)
flags_ind_gt = numpy.array(flags_ind_gt)
cm = numpy.zeros((len(class_names_gt), len(class_names_gt)))
for i in range(min(flags_ind.shape[0], flags_ind_gt.shape[0])):
cm[int(flags_ind_gt[i]), int(flags_ind[i])] += 1
else:
cm = []
flags_ind_gt = numpy.array([])
acc = plotSegmentationResults(flags_ind, flags_ind_gt, class_names,
mt_step, not plot_results)
if acc >= 0:
print("Overall Accuracy: {0:.3f}".format(acc))
return (flags_ind, class_names_gt, acc, cm)
else:
return (flags_ind, class_names, acc, cm)
def trainHMM_fromDir(dirPath, hmm_model_name, mt_win, mt_step):
'''
This function trains a HMM model for segmentation-classification using
a where WAV files and .segment (ground-truth files) are stored
ARGUMENTS:
- dirPath: the path of the data diretory
- hmm_model_name: the name of the HMM model to be stored
- mt_win: mid-term window size
- mt_step: mid-term window step
RETURNS:
- hmm: an object to the resulting HMM
- class_names: a list of class_names
After training, hmm, class_names, along with the mt_win
and mt_step values are stored in the hmm_model_name file
'''
flags_all = numpy.array([])
classes_all = []
for i, f in enumerate(glob.glob(dirPath + os.sep + '*.wav')):
# for each WAV file
wav_file = f
gt_file = f.replace('.wav', '.segments')
if not os.path.isfile(gt_file):
continue
[seg_start, seg_end, seg_labs] = readSegmentGT(gt_file)
flags, class_names = segs2flags(seg_start, seg_end, seg_labs, mt_step)
for c in class_names:
# update class names:
if c not in classes_all:
classes_all.append(c)
[fs, x] = audioBasicIO.readAudioFile(wav_file)
[F, _, _] = aF.mtFeatureExtraction(x, fs, mt_win * fs, mt_step * fs,
round(fs * 0.050),
round(fs * 0.050))
lenF = F.shape[1]
lenL = len(flags)
min_sm = min(lenF, lenL)
F = F[:, 0:min_sm]
flags = flags[0:min_sm]
flagsNew = []
for j, fl in enumerate(flags): # append features and labels
flagsNew.append(classes_all.index(class_names[flags[j]]))
flags_all = numpy.append(flags_all, numpy.array(flagsNew))
if i == 0:
f_all = F
else:
f_all = numpy.concatenate((f_all, F), axis=1)
start_prob, transmat, means, cov = trainHMM_computeStatistics(
f_all, flags_all) # compute HMM statistics
hmm = hmmlearn.hmm.GaussianHMM(start_prob.shape[0], "diag") # train HMM
hmm.startprob_ = start_prob
hmm.transmat_ = transmat
hmm.means_ = means
hmm.covars_ = cov
fo = open(hmm_model_name, "wb") # save HMM model
cPickle.dump(hmm, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(classes_all, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mt_win, fo, protocol=cPickle.HIGHEST_PROTOCOL)
cPickle.dump(mt_step, fo, protocol=cPickle.HIGHEST_PROTOCOL)
fo.close()
return hmm, classes_all
def speakerDiarization(fileName,
numOfSpeakers,
mtSize=2.0,
mtStep=0.2,
stWin=0.05,
LDAdim=35,
PLOT=False):
'''
ARGUMENTS:
- fileName: the name of the WAV file to be analyzed
- numOfSpeakers the number of speakers (clusters) in the recording (<=0 for unknown)
- mtSize (opt) mid-term window size
- mtStep (opt) mid-term window step
- stWin (opt) short-term window size
- LDAdim (opt) LDA dimension (0 for no LDA)
- PLOT (opt) 0 for not plotting the results 1 for plottingy
'''
[Fs, x] = audioBasicIO.readAudioFile(fileName)
x = audioBasicIO.stereo2mono(x)
Duration = len(x) / Fs
[
Classifier1, MEAN1, STD1, classNames1, mtWin1, mtStep1, stWin1,
stStep1, computeBEAT1
] = aT.loadKNNModel(os.path.join("data", "knnSpeakerAll"))
[
Classifier2, MEAN2, STD2, classNames2, mtWin2, mtStep2, stWin2,
stStep2, computeBEAT2
] = aT.loadKNNModel(os.path.join("data", "knnSpeakerFemaleMale"))
[MidTermFeatures,
ShortTermFeatures] = aF.mtFeatureExtraction(x, Fs,
mtSize * Fs, mtStep * Fs,
round(Fs * stWin),
round(Fs * stWin * 0.5))
MidTermFeatures2 = numpy.zeros(
(MidTermFeatures.shape[0] + len(classNames1) + len(classNames2),
MidTermFeatures.shape[1]))
for i in range(MidTermFeatures.shape[1]):
curF1 = (MidTermFeatures[:, i] - MEAN1) / STD1
curF2 = (MidTermFeatures[:, i] - MEAN2) / STD2
[Result, P1] = aT.classifierWrapper(Classifier1, "knn", curF1)
[Result, P2] = aT.classifierWrapper(Classifier2, "knn", curF2)
MidTermFeatures2[0:MidTermFeatures.shape[0], i] = MidTermFeatures[:, i]
MidTermFeatures2[MidTermFeatures.shape[0]:MidTermFeatures.shape[0] +
len(classNames1), i] = P1 + 0.0001
MidTermFeatures2[MidTermFeatures.shape[0] + len(classNames1)::,
i] = P2 + 0.0001
MidTermFeatures = MidTermFeatures2 # TODO
# SELECT FEATURES:
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20]; # SET 0A
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20, 99,100]; # SET 0B
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,
# 97,98, 99,100]; # SET 0C
iFeaturesSelect = [
8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 41, 42, 43, 44, 45,
46, 47, 48, 49, 50, 51, 52, 53
] # SET 1A
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53, 99,100]; # SET 1B
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 1C
#iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53]; # SET 2A
#iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53, 99,100]; # SET 2B
#iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 2C
#iFeaturesSelect = range(100); # SET 3
#MidTermFeatures += numpy.random.rand(MidTermFeatures.shape[0], MidTermFeatures.shape[1]) * 0.000000010
MidTermFeatures = MidTermFeatures[iFeaturesSelect, :]
(MidTermFeaturesNorm, MEAN,
STD) = aT.normalizeFeatures([MidTermFeatures.T])
MidTermFeaturesNorm = MidTermFeaturesNorm[0].T
numOfWindows = MidTermFeatures.shape[1]
# remove outliers:
DistancesAll = numpy.sum(distance.squareform(
distance.pdist(MidTermFeaturesNorm.T)),
axis=0)
MDistancesAll = numpy.mean(DistancesAll)
iNonOutLiers = numpy.nonzero(DistancesAll < 1.2 * MDistancesAll)[0]
# TODO: Combine energy threshold for outlier removal:
#EnergyMin = numpy.min(MidTermFeatures[1,:])
#EnergyMean = numpy.mean(MidTermFeatures[1,:])
#Thres = (1.5*EnergyMin + 0.5*EnergyMean) / 2.0
#iNonOutLiers = numpy.nonzero(MidTermFeatures[1,:] > Thres)[0]
#print iNonOutLiers
perOutLier = (100.0 *
(numOfWindows - iNonOutLiers.shape[0])) / numOfWindows
MidTermFeaturesNormOr = MidTermFeaturesNorm
MidTermFeaturesNorm = MidTermFeaturesNorm[:, iNonOutLiers]
# LDA dimensionality reduction:
if LDAdim > 0:
#[mtFeaturesToReduce, _] = aF.mtFeatureExtraction(x, Fs, mtSize * Fs, stWin * Fs, round(Fs*stWin), round(Fs*stWin));
# extract mid-term features with minimum step:
mtWinRatio = int(round(mtSize / stWin))
mtStepRatio = int(round(stWin / stWin))
mtFeaturesToReduce = []
numOfFeatures = len(ShortTermFeatures)
numOfStatistics = 2
#for i in range(numOfStatistics * numOfFeatures + 1):
for i in range(numOfStatistics * numOfFeatures):
mtFeaturesToReduce.append([])
for i in range(numOfFeatures): # for each of the short-term features:
curPos = 0
N = len(ShortTermFeatures[i])
while (curPos < N):
N1 = curPos
N2 = curPos + mtWinRatio
if N2 > N:
N2 = N
curStFeatures = ShortTermFeatures[i][N1:N2]
mtFeaturesToReduce[i].append(numpy.mean(curStFeatures))
mtFeaturesToReduce[i + numOfFeatures].append(
numpy.std(curStFeatures))
curPos += mtStepRatio
mtFeaturesToReduce = numpy.array(mtFeaturesToReduce)
mtFeaturesToReduce2 = numpy.zeros(
(mtFeaturesToReduce.shape[0] + len(classNames1) + len(classNames2),
mtFeaturesToReduce.shape[1]))
for i in range(mtFeaturesToReduce.shape[1]):
curF1 = (mtFeaturesToReduce[:, i] - MEAN1) / STD1
curF2 = (mtFeaturesToReduce[:, i] - MEAN2) / STD2
[Result, P1] = aT.classifierWrapper(Classifier1, "knn", curF1)
[Result, P2] = aT.classifierWrapper(Classifier2, "knn", curF2)
mtFeaturesToReduce2[0:mtFeaturesToReduce.shape[0],
i] = mtFeaturesToReduce[:, i]
mtFeaturesToReduce2[
mtFeaturesToReduce.shape[0]:mtFeaturesToReduce.shape[0] +
len(classNames1), i] = P1 + 0.0001
mtFeaturesToReduce2[mtFeaturesToReduce.shape[0] +
len(classNames1)::, i] = P2 + 0.0001
mtFeaturesToReduce = mtFeaturesToReduce2
mtFeaturesToReduce = mtFeaturesToReduce[iFeaturesSelect, :]
#mtFeaturesToReduce += numpy.random.rand(mtFeaturesToReduce.shape[0], mtFeaturesToReduce.shape[1]) * 0.0000010
(mtFeaturesToReduce, MEAN,
STD) = aT.normalizeFeatures([mtFeaturesToReduce.T])
mtFeaturesToReduce = mtFeaturesToReduce[0].T
#DistancesAll = numpy.sum(distance.squareform(distance.pdist(mtFeaturesToReduce.T)), axis=0)
#MDistancesAll = numpy.mean(DistancesAll)
#iNonOutLiers2 = numpy.nonzero(DistancesAll < 3.0*MDistancesAll)[0]
#mtFeaturesToReduce = mtFeaturesToReduce[:, iNonOutLiers2]
Labels = numpy.zeros((mtFeaturesToReduce.shape[1], ))
LDAstep = 1.0
LDAstepRatio = LDAstep / stWin
#print LDAstep, LDAstepRatio
for i in range(Labels.shape[0]):
Labels[i] = int(i * stWin / LDAstepRatio)
clf = sklearn.discriminant_analysis.LinearDiscriminantAnalysis(
n_components=LDAdim)
clf.fit(mtFeaturesToReduce.T, Labels)
MidTermFeaturesNorm = (clf.transform(MidTermFeaturesNorm.T)).T
if numOfSpeakers <= 0:
sRange = range(2, 10)
else:
sRange = [numOfSpeakers]
clsAll = []
silAll = []
centersAll = []
for iSpeakers in sRange:
k_means = sklearn.cluster.KMeans(n_clusters=iSpeakers)
k_means.fit(MidTermFeaturesNorm.T)
cls = k_means.labels_
means = k_means.cluster_centers_
# Y = distance.squareform(distance.pdist(MidTermFeaturesNorm.T))
clsAll.append(cls)
centersAll.append(means)
silA = []
silB = []
for c in range(iSpeakers
): # for each speaker (i.e. for each extracted cluster)
clusterPerCent = numpy.nonzero(cls == c)[0].shape[0] / float(
len(cls))
if clusterPerCent < 0.020:
silA.append(0.0)
silB.append(0.0)
else:
MidTermFeaturesNormTemp = MidTermFeaturesNorm[:, cls ==
c] # get subset of feature vectors
Yt = distance.pdist(
MidTermFeaturesNormTemp.T
) # compute average distance between samples that belong to the cluster (a values)
silA.append(numpy.mean(Yt) * clusterPerCent)
silBs = []
for c2 in range(
iSpeakers
): # compute distances from samples of other clusters
if c2 != c:
clusterPerCent2 = numpy.nonzero(
cls == c2)[0].shape[0] / float(len(cls))
MidTermFeaturesNormTemp2 = MidTermFeaturesNorm[:,
cls ==
c2]
Yt = distance.cdist(MidTermFeaturesNormTemp.T,
MidTermFeaturesNormTemp2.T)
silBs.append(
numpy.mean(Yt) *
(clusterPerCent + clusterPerCent2) / 2.0)
silBs = numpy.array(silBs)
silB.append(
min(silBs)
) # ... and keep the minimum value (i.e. the distance from the "nearest" cluster)
silA = numpy.array(silA)
silB = numpy.array(silB)
sil = []
for c in range(iSpeakers): # for each cluster (speaker)
sil.append((silB[c] - silA[c]) /
(max(silB[c], silA[c]) + 0.00001)) # compute silhouette
silAll.append(numpy.mean(sil)) # keep the AVERAGE SILLOUETTE
#silAll = silAll * (1.0/(numpy.power(numpy.array(sRange),0.5)))
imax = numpy.argmax(silAll) # position of the maximum sillouette value
nSpeakersFinal = sRange[imax] # optimal number of clusters
# generate the final set of cluster labels
# (important: need to retrieve the outlier windows: this is achieved by giving them the value of their nearest non-outlier window)
cls = numpy.zeros((numOfWindows, ))
for i in range(numOfWindows):
j = numpy.argmin(numpy.abs(i - iNonOutLiers))
cls[i] = clsAll[imax][j]
# Post-process method 1: hmm smoothing
for i in range(1):
startprob, transmat, means, cov = trainHMM_computeStatistics(
MidTermFeaturesNormOr, cls)
hmm = hmmlearn.hmm.GaussianHMM(startprob.shape[0],
"diag") # hmm training
hmm.startprob_ = startprob
hmm.transmat_ = transmat
hmm.means_ = means
hmm.covars_ = cov
cls = hmm.predict(MidTermFeaturesNormOr.T)
# Post-process method 2: median filtering:
cls = scipy.signal.medfilt(cls, 13)
cls = scipy.signal.medfilt(cls, 11)
sil = silAll[imax] # final sillouette
classNames = ["speaker{0:d}".format(c) for c in range(nSpeakersFinal)]
#debug
segslist = [list() for x in range(numOfSpeakers)]
start = 0
for i in range(0, len(cls) - 1):
if cls[i] != cls[i + 1]:
segTemp = dict()
segTemp['start'] = start
segTemp['end'] = i * mtStep + mtStep
speakerID = int(cls[i])
print speakerID, segTemp
segslist[speakerID].append(segTemp)
start = segTemp['end']
segTemp = dict()
segTemp['start'] = start
segTemp['end'] = (len(cls) - 1) * mtStep + mtStep
speakerID = int(cls[-1])
print speakerID
print segTemp
segslist[speakerID].append(segTemp)
print segslist
conversation = list()
sound = AudioSegment.from_file(fileName)
for speakerID, speaker in enumerate(segslist):
for segID, seg in enumerate(speaker):
chunk = sound[seg['start'] * 1000:seg['end'] * 1000]
output_name = 'speaker{}_{}.wav'.format(speakerID, segID)
chunk.export(output_name, format="wav")
r = sr.Recognizer()
with sr.AudioFile(output_name) as source:
audio = r.record(source) # read the entire audio file
# recognize speech using Sphinx
try:
print("Sphinx thinks you said: " +
r.recognize_sphinx(audio))
content = dict()
content['text'] = r.recognize_sphinx(audio)
content['speakerID'] = speakerID
content['start'] = seg['start']
conversation.append(content)
except sr.UnknownValueError:
print("Sphinx could not understand audio")
except sr.RequestError as e:
print("Sphinx error; {0}".format(e))
conversation.sort(key=operator.itemgetter('start'))
text_file = open('text.txt', 'w')
for c in conversation:
line = 'Speaker{}: {}\n'.format(c['speakerID'], c['text'])
text_file.write(line)
print conversation
return cls
def neuralNetClassidication(duration, midTermBufferSizeSec, modelName):
n_dim = 68
n_classes = 2
n_hidden_units_one = 280
n_hidden_units_two = 300
sd = 1 / numpy.sqrt(n_dim)
learning_rate = 0.01
X = tf.placeholder(tf.float32, [None, n_dim])
Y = tf.placeholder(tf.float32, [None, n_classes])
W_1 = tf.Variable(tf.random_normal([n_dim, n_hidden_units_one],
mean=0,
stddev=sd),
name="W_1")
b_1 = tf.Variable(tf.random_normal([n_hidden_units_one], mean=0,
stddev=sd),
name="b_1")
h_1 = tf.nn.tanh(tf.matmul(X, W_1) + b_1)
W_2 = tf.Variable(tf.random_normal(
[n_hidden_units_one, n_hidden_units_two], mean=0, stddev=sd),
name="W_2")
b_2 = tf.Variable(tf.random_normal([n_hidden_units_two], mean=0,
stddev=sd),
name="b_2")
h_2 = tf.nn.sigmoid(tf.matmul(h_1, W_2) + b_2)
W = tf.Variable(tf.random_normal([n_hidden_units_two, n_classes],
mean=0,
stddev=sd),
name="W")
b = tf.Variable(tf.random_normal([n_classes], mean=0, stddev=sd), name="b")
y_ = tf.nn.softmax(tf.matmul(h_2, W) + b)
saver = tf.train.Saver()
cost_function = tf.reduce_mean(
-tf.reduce_sum(Y * tf.log(y_), reduction_indices=[1]))
optimizer = tf.train.GradientDescentOptimizer(learning_rate).minimize(
cost_function)
correct_prediction = tf.equal(tf.argmax(y_, 1), tf.argmax(Y, 1))
accuracy = tf.reduce_mean(tf.cast(correct_prediction, tf.float32))
cost_history = numpy.empty(shape=[1], dtype=float)
y_true, y_pred = None, None
inp = alsaaudio.PCM(alsaaudio.PCM_CAPTURE, alsaaudio.PCM_NONBLOCK)
inp.setchannels(1)
inp.setrate(Fs)
inp.setformat(alsaaudio.PCM_FORMAT_S16_LE)
inp.setperiodsize(512)
midTermBufferSize = int(midTermBufferSizeSec * Fs)
allData = []
midTermBuffer = []
curWindow = []
count = 0
with tf.Session() as sess:
# sess.run(init)
saver.restore(sess, modelName)
while len(allData) < duration * Fs:
# Read data from device
l, data = inp.read()
if l:
for i in range(l):
curWindow.append(audioop.getsample(data, 2, i))
if (len(curWindow) + len(midTermBuffer) > midTermBufferSize):
samplesToCopyToMidBuffer = midTermBufferSize - len(
midTermBuffer)
else:
samplesToCopyToMidBuffer = len(curWindow)
midTermBuffer = midTermBuffer + curWindow[
0:samplesToCopyToMidBuffer]
del (curWindow[0:samplesToCopyToMidBuffer])
if len(midTermBuffer) == midTermBufferSize:
count += 1
[mtFeatures,
stFeatures] = aF.mtFeatureExtraction(midTermBuffer, Fs,
2.0 * Fs, 2.0 * Fs,
0.020 * Fs, 0.020 * Fs)
features = numpy.array([mtFeatures[:, 0]])
y_pred = sess.run(tf.argmax(y_, 1), feed_dict={X: features})
if y_pred[0] == 0:
print "Class A"
else:
print "Class B"
allData = allData + midTermBuffer
plt.clf()
plt.plot(midTermBuffer)
plt.show(block=False)
plt.draw()
midTermBuffer = []
def recordAnalyzeAudio(duration, outputWavFile, midTermBufferSizeSec,
modelName, modelType):
'''
recordAnalyzeAudio(duration, outputWavFile, midTermBufferSizeSec, modelName, modelType)
This function is used to record and analyze audio segments, in a fix window basis.
ARGUMENTS:
- duration total recording duration
- outputWavFile path of the output WAV file
- midTermBufferSizeSec (fix)segment length in seconds
- modelName classification model name
- modelType classification model type
'''
if modelType == 'neuralnet':
neuralNetClassidication(duration, midTermBufferSizeSec, modelName)
else:
if modelType == 'svm':
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin,
stStep, computeBEAT
] = aT.loadSVModel(modelName)
elif modelType == 'knn':
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin,
stStep, computeBEAT
] = aT.loadKNNModel(modelName)
else:
Classifier = None
inp = alsaaudio.PCM(alsaaudio.PCM_CAPTURE, alsaaudio.PCM_NONBLOCK)
inp.setchannels(1)
inp.setrate(Fs)
inp.setformat(alsaaudio.PCM_FORMAT_S16_LE)
inp.setperiodsize(512)
midTermBufferSize = int(midTermBufferSizeSec * Fs)
allData = []
midTermBuffer = []
curWindow = []
count = 0
# a sequence of samples
# process a sequence
# speed
# emergency vehicle detection what have they done? emergency vehicle classification patents
# plot features!!!
# patents extracted!
# latex literature review
# writing a paper
#
while len(allData) < duration * Fs:
# Read data from device
l, data = inp.read()
if l:
for i in range(l):
curWindow.append(audioop.getsample(data, 2, i))
if (len(curWindow) + len(midTermBuffer) > midTermBufferSize):
samplesToCopyToMidBuffer = midTermBufferSize - len(
midTermBuffer)
else:
samplesToCopyToMidBuffer = len(curWindow)
midTermBuffer = midTermBuffer + curWindow[
0:samplesToCopyToMidBuffer]
del (curWindow[0:samplesToCopyToMidBuffer])
if len(midTermBuffer) == midTermBufferSize:
count += 1
if Classifier != None:
[mtFeatures, stFeatures
] = aF.mtFeatureExtraction(midTermBuffer, Fs, 2.0 * Fs,
2.0 * Fs, 0.020 * Fs,
0.020 * Fs)
curFV = (mtFeatures[:, 0] - MEAN) / STD
[result, P] = aT.classifierWrapper(Classifier, modelType,
curFV)
print classNames[int(result)]
allData = allData + midTermBuffer
plt.clf()
plt.plot(midTermBuffer)
plt.show(block=False)
plt.draw()
midTermBuffer = []
allDataArray = numpy.int16(allData)
wavfile.write(outputWavFile, Fs, allDataArray)
def recordAnalyzeAudio(duration, outputWavFile, midTermBufferSizeSec, modelName, modelType): ''' recordAnalyzeAudio(duration, outputWavFile, midTermBufferSizeSec, modelName, modelType) This function is used to record and analyze audio segments, in a fix window basis. ARGUMENTS: - duration total recording duration - outputWavFile path of the output WAV file - midTermBufferSizeSec (fix)segment length in seconds - modelName classification model name - modelType classification model type ''' if modelType=='svm': [Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, compute_beat] = aT.load_model(modelName) elif modelType=='knn': [Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, compute_beat] = aT.load_model_knn(modelName) else: Classifier = None inp = alsaaudio.PCM(alsaaudio.PCM_CAPTURE, alsaaudio.PCM_NONBLOCK) inp.setchannels(1) inp.setrate(Fs) inp.setformat(alsaaudio.PCM_FORMAT_S16_LE) inp.setperiodsize(512) midTermBufferSize = int(midTermBufferSizeSec * Fs) allData = [] midTermBuffer = [] curWindow = [] count = 0 while len(allData)<duration*Fs: # Read data from device l,data = inp.read() if l: for i in range(l): curWindow.append(audioop.getsample(data, 2, i)) if (len(curWindow)+len(midTermBuffer)>midTermBufferSize): samplesToCopyToMidBuffer = midTermBufferSize - len(midTermBuffer) else: samplesToCopyToMidBuffer = len(curWindow) midTermBuffer = midTermBuffer + curWindow[0:samplesToCopyToMidBuffer]; del(curWindow[0:samplesToCopyToMidBuffer]) if len(midTermBuffer) == midTermBufferSize: count += 1 if Classifier!=None: [mtFeatures, stFeatures, _] = aF.mtFeatureExtraction(midTermBuffer, Fs, 2.0*Fs, 2.0*Fs, 0.020*Fs, 0.020*Fs) curFV = (mtFeatures[:,0] - MEAN) / STD; [result, P] = aT.classifierWrapper(Classifier, modelType, curFV) print classNames[int(result)] allData = allData + midTermBuffer plt.clf() plt.plot(midTermBuffer) plt.show(block = False) plt.draw() midTermBuffer = [] allDataArray = numpy.int16(allData) wavfile.write(outputWavFile, Fs, allDataArray)
def fileClassification(inputFile, modelName, modelType, chunk_seconds=None):
# Load classifier:
print "DEBUG: fileClassification - inputFile: " + inputFile
'''
if not os.path.isfile(modelName):
print "fileClassification: input modelName not found!"
return (-1, -1, -1)
if not os.path.isfile(inputFile):
print "fileClassification: wav file not found!"
return (-1, -1, -1)
'''
#print "computeBeat"
if (modelType) == 'svm' or (modelType == 'svm_rbf'):
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep,
computeBEAT
] = loadSVModel(modelName)
elif modelType == 'knn':
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep,
computeBEAT
] = loadKNNModel(modelName)
elif modelType == 'randomforest':
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep,
computeBEAT
] = loadRandomForestModel(modelName)
elif modelType == 'gradientboosting':
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep,
computeBEAT
] = loadGradientBoostingModel(modelName)
elif modelType == 'extratrees':
[
Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep,
computeBEAT
] = loadExtraTreesModel(modelName)
#print computeBEAT
chunk_data = audioBasicIO.readAudioFile(
inputFile, chunk_seconds) # read audio file and convert to mono
if chunk_seconds:
classification_data = []
features = []
for i, chunk in enumerate(chunk_data):
#print str(i) + " of " + str(len(chunk_data))
[Fs, x] = chunk
x = audioBasicIO.stereo2mono(x)
if isinstance(x, int): # audio file IO problem
return (-1, -1, -1)
if x.shape[0] / float(Fs) <= mtWin:
return (-1, -1, -1)
# feature extraction:
[MidTermFeatures,
stFeatures] = aF.mtFeatureExtraction(x, Fs,
mtWin * Fs, mtStep * Fs,
round(Fs * stWin),
round(Fs * stStep))
# if i == (len(chunk_data)-1):
# print "stTermFeatures"
# print stFeatures[33]
# print len(stFeatures)
# print "---------------"
#features.append(MidTermFeatures.tolist())
MidTermFeatures = MidTermFeatures.mean(
axis=1) # long term averaging of mid-term statistics
features.append(MidTermFeatures.tolist())
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(stFeatures, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
curFV = (MidTermFeatures - MEAN) / STD # normalization
[Result, P] = classifierWrapper(Classifier, modelType,
curFV) # classification
#print(type(classNames))
#print(type(P.tolist()))
classification_data.append([Result, P.tolist(), classNames])
return [classification_data, features]
[Fs, x] = chunk_data #audioBasicIO.readAudioFile(inputFile)
x = audioBasicIO.stereo2mono(x)
if isinstance(x, int): # audio file IO problem
return (-1, -1, -1)
if x.shape[0] / float(Fs) <= mtWin:
return (-1, -1, -1)
# feature extraction:
[MidTermFeatures, s] = aF.mtFeatureExtraction(x, Fs,
mtWin * Fs, mtStep * Fs,
round(Fs * stWin),
round(Fs * stStep))
MidTermFeatures = MidTermFeatures.mean(
axis=1) # long term averaging of mid-term statistics
if computeBEAT:
[beat, beatConf] = aF.beatExtraction(s, stStep)
MidTermFeatures = numpy.append(MidTermFeatures, beat)
MidTermFeatures = numpy.append(MidTermFeatures, beatConf)
curFV = (MidTermFeatures - MEAN) / STD # normalization
[Result, P] = classifierWrapper(Classifier, modelType,
curFV) # classification
return [Result, P, classNames, MidTermFeatures.tolist()]
def mtFileClassification(inputFile, modelName, modelType, plotResults = False, gtFile = ""):
'''
This function performs mid-term classification of an audio stream.
Towards this end, supervised knowledge is used, i.e. a pre-trained classifier.
ARGUMENTS:
- inputFile: path of the input WAV file
- modelName: name of the classification model
- modelType: svm or knn depending on the classifier type
- plotResults: True if results are to be plotted using matplotlib along with a set of statistics
RETURNS:
- segs: a sequence of segment's endpoints: segs[i] is the endpoint of the i-th segment (in seconds)
- classes: a sequence of class flags: class[i] is the class ID of the i-th segment
'''
if not os.path.isfile(modelName):
print "mtFileClassificationError: input modelType not found!"
return (-1,-1,-1)
# Load classifier:
if modelType=='svm':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = aT.loadSVModel(modelName)
elif modelType=='knn':
[Classifier, MEAN, STD, classNames, mtWin, mtStep, stWin, stStep, computeBEAT] = aT.loadKNNModel(modelName)
if computeBEAT:
print "Model " + modelName + " contains long-term music features (beat etc) and cannot be used in segmentation"
return (-1,-1,-1)
[Fs, x] = audioBasicIO.readAudioFile(inputFile) # load input file
if Fs == -1: # could not read file
return (-1,-1,-1)
x = audioBasicIO.stereo2mono(x); # convert stereo (if) to mono
Duration = len(x) / Fs
# mid-term feature extraction:
[MidTermFeatures, _] = aF.mtFeatureExtraction(x, Fs, mtWin * Fs, mtStep * Fs, round(Fs*stWin), round(Fs*stStep));
flags = []; Ps = []; flagsInd = []
for i in range(MidTermFeatures.shape[1]): # for each feature vector (i.e. for each fix-sized segment):
curFV = (MidTermFeatures[:, i] - MEAN) / STD; # normalize current feature vector
[Result, P] = aT.classifierWrapper(Classifier, modelType, curFV) # classify vector
flagsInd.append(Result)
flags.append(classNames[int(Result)]) # update class label matrix
Ps.append(numpy.max(P)) # update probability matrix
flagsInd = numpy.array(flagsInd)
# 1-window smoothing
for i in range(1, len(flagsInd)-1):
if flagsInd[i-1]==flagsInd[i+1]:
flagsInd[i] = flagsInd[i+1]
(segs, classes) = flags2segs(flags, mtStep) # convert fix-sized flags to segments and classes
segs[-1] = len(x) / float(Fs)
# Load grount-truth:
if os.path.isfile(gtFile):
[segStartGT, segEndGT, segLabelsGT] = readSegmentGT(gtFile)
flagsGT, classNamesGT = segs2flags(segStartGT, segEndGT, segLabelsGT, mtStep)
flagsIndGT = []
for j, fl in enumerate(flagsGT): # "align" labels with GT
if classNamesGT[flagsGT[j]] in classNames:
flagsIndGT.append( classNames.index( classNamesGT[flagsGT[j]] ) )
else:
flagsIndGT.append( -1 )
flagsIndGT = numpy.array(flagsIndGT)
else:
flagsIndGT = numpy.array([])
acc = plotSegmentationResults(flagsInd, flagsIndGT, classNames, mtStep, not plotResults)
if acc>=0:
print "Overall Accuracy: {0:.3f}".format(acc)
return (flagsInd, classNames, acc)
def speakerDiarization(fileName, numOfSpeakers, mtSize = 2.0, mtStep=0.2, stWin=0.05, LDAdim = 35, PLOT = False):
'''
ARGUMENTS:
- fileName: the name of the WAV file to be analyzed
- numOfSpeakers the number of speakers (clusters) in the recording (<=0 for unknown)
- mtSize (opt) mid-term window size
- mtStep (opt) mid-term window step
- stWin (opt) short-term window size
- LDAdim (opt) LDA dimension (0 for no LDA)
- PLOT (opt) 0 for not plotting the results 1 for plottingy
'''
[Fs, x] = audioBasicIO.readAudioFile(fileName)
x = audioBasicIO.stereo2mono(x);
Duration = len(x) / Fs
[Classifier1, MEAN1, STD1, classNames1, mtWin1, mtStep1, stWin1, stStep1, computeBEAT1] = aT.loadKNNModel("data/knnSpeakerAll")
[Classifier2, MEAN2, STD2, classNames2, mtWin2, mtStep2, stWin2, stStep2, computeBEAT2] = aT.loadKNNModel("data/knnSpeakerFemaleMale")
[MidTermFeatures, ShortTermFeatures] = aF.mtFeatureExtraction(x, Fs, mtSize * Fs, mtStep * Fs, round(Fs*stWin), round(Fs*stWin*0.5));
MidTermFeatures2 = numpy.zeros( (MidTermFeatures.shape[0] + len(classNames1) + len(classNames2), MidTermFeatures.shape[1] ) )
for i in range(MidTermFeatures.shape[1]):
curF1 = (MidTermFeatures[:,i] - MEAN1) / STD1
curF2 = (MidTermFeatures[:,i] - MEAN2) / STD2
[Result, P1] = aT.classifierWrapper(Classifier1, "knn", curF1)
[Result, P2] = aT.classifierWrapper(Classifier2, "knn", curF2)
MidTermFeatures2[0:MidTermFeatures.shape[0], i] = MidTermFeatures[:, i]
MidTermFeatures2[MidTermFeatures.shape[0]:MidTermFeatures.shape[0]+len(classNames1), i] = P1 + 0.0001;
MidTermFeatures2[MidTermFeatures.shape[0]+len(classNames1)::, i] = P2 + 0.0001;
MidTermFeatures = MidTermFeatures2 # TODO
# SELECT FEATURES:
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20]; # SET 0A
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20, 99,100]; # SET 0B
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 0C
iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53]; # SET 1A
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53, 99,100]; # SET 1B
#iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 1C
#iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53]; # SET 2A
#iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53, 99,100]; # SET 2B
#iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 2C
#iFeaturesSelect = range(100); # SET 3
#MidTermFeatures += numpy.random.rand(MidTermFeatures.shape[0], MidTermFeatures.shape[1]) * 0.000000010
MidTermFeatures = MidTermFeatures[iFeaturesSelect,:]
(MidTermFeaturesNorm, MEAN, STD) = aT.normalizeFeatures([MidTermFeatures.T])
MidTermFeaturesNorm = MidTermFeaturesNorm[0].T
numOfWindows = MidTermFeatures.shape[1]
# remove outliers:
DistancesAll = numpy.sum(distance.squareform(distance.pdist(MidTermFeaturesNorm.T)), axis=0)
MDistancesAll = numpy.mean(DistancesAll)
iNonOutLiers = numpy.nonzero(DistancesAll < 1.2*MDistancesAll)[0]
# TODO: Combine energy threshold for outlier removal:
#EnergyMin = numpy.min(MidTermFeatures[1,:])
#EnergyMean = numpy.mean(MidTermFeatures[1,:])
#Thres = (1.5*EnergyMin + 0.5*EnergyMean) / 2.0
#iNonOutLiers = numpy.nonzero(MidTermFeatures[1,:] > Thres)[0]
#print iNonOutLiers
perOutLier = (100.0*(numOfWindows-iNonOutLiers.shape[0])) / numOfWindows
MidTermFeaturesNormOr = MidTermFeaturesNorm
MidTermFeaturesNorm = MidTermFeaturesNorm[:, iNonOutLiers]
# LDA dimensionality reduction:
if LDAdim > 0:
#[mtFeaturesToReduce, _] = aF.mtFeatureExtraction(x, Fs, mtSize * Fs, stWin * Fs, round(Fs*stWin), round(Fs*stWin));
# extract mid-term features with minimum step:
mtWinRatio = int(round(mtSize / stWin));
mtStepRatio = int(round(stWin / stWin));
mtFeaturesToReduce = []
numOfFeatures = len(ShortTermFeatures)
numOfStatistics = 2;
#for i in range(numOfStatistics * numOfFeatures + 1):
for i in range(numOfStatistics * numOfFeatures):
mtFeaturesToReduce.append([])
for i in range(numOfFeatures): # for each of the short-term features:
curPos = 0
N = len(ShortTermFeatures[i])
while (curPos<N):
N1 = curPos
N2 = curPos + mtWinRatio
if N2 > N:
N2 = N
curStFeatures = ShortTermFeatures[i][N1:N2]
mtFeaturesToReduce[i].append(numpy.mean(curStFeatures))
mtFeaturesToReduce[i+numOfFeatures].append(numpy.std(curStFeatures))
curPos += mtStepRatio
mtFeaturesToReduce = numpy.array(mtFeaturesToReduce)
mtFeaturesToReduce2 = numpy.zeros( (mtFeaturesToReduce.shape[0] + len(classNames1) + len(classNames2), mtFeaturesToReduce.shape[1] ) )
for i in range(mtFeaturesToReduce.shape[1]):
curF1 = (mtFeaturesToReduce[:,i] - MEAN1) / STD1
curF2 = (mtFeaturesToReduce[:,i] - MEAN2) / STD2
[Result, P1] = aT.classifierWrapper(Classifier1, "knn", curF1)
[Result, P2] = aT.classifierWrapper(Classifier2, "knn", curF2)
mtFeaturesToReduce2[0:mtFeaturesToReduce.shape[0], i] = mtFeaturesToReduce[:, i]
mtFeaturesToReduce2[mtFeaturesToReduce.shape[0]:mtFeaturesToReduce.shape[0]+len(classNames1), i] = P1 + 0.0001;
mtFeaturesToReduce2[mtFeaturesToReduce.shape[0]+len(classNames1)::, i] = P2 + 0.0001;
mtFeaturesToReduce = mtFeaturesToReduce2
mtFeaturesToReduce = mtFeaturesToReduce[iFeaturesSelect,:]
#mtFeaturesToReduce += numpy.random.rand(mtFeaturesToReduce.shape[0], mtFeaturesToReduce.shape[1]) * 0.0000010
(mtFeaturesToReduce, MEAN, STD) = aT.normalizeFeatures([mtFeaturesToReduce.T])
mtFeaturesToReduce = mtFeaturesToReduce[0].T
#DistancesAll = numpy.sum(distance.squareform(distance.pdist(mtFeaturesToReduce.T)), axis=0)
#MDistancesAll = numpy.mean(DistancesAll)
#iNonOutLiers2 = numpy.nonzero(DistancesAll < 3.0*MDistancesAll)[0]
#mtFeaturesToReduce = mtFeaturesToReduce[:, iNonOutLiers2]
Labels = numpy.zeros((mtFeaturesToReduce.shape[1],));
LDAstep = 1.0
LDAstepRatio = LDAstep / stWin
#print LDAstep, LDAstepRatio
for i in range(Labels.shape[0]):
Labels[i] = int(i*stWin/LDAstepRatio);
clf = LDA(n_components=LDAdim)
clf.fit(mtFeaturesToReduce.T, Labels, tol=0.000001)
MidTermFeaturesNorm = (clf.transform(MidTermFeaturesNorm.T)).T
if numOfSpeakers<=0:
sRange = range(2,10)
else:
sRange = [numOfSpeakers]
clsAll = []; silAll = []; centersAll = []
for iSpeakers in sRange:
cls, means, steps = mlpy.kmeans(MidTermFeaturesNorm.T, k=iSpeakers, plus=True) # perform k-means clustering
#YDist = distance.pdist(MidTermFeaturesNorm.T, metric='euclidean')
#print distance.squareform(YDist).shape
#hc = mlpy.HCluster()
#hc.linkage(YDist)
#cls = hc.cut(14.5)
#print cls
# Y = distance.squareform(distance.pdist(MidTermFeaturesNorm.T))
clsAll.append(cls)
centersAll.append(means)
silA = []; silB = []
for c in range(iSpeakers): # for each speaker (i.e. for each extracted cluster)
clusterPerCent = numpy.nonzero(cls==c)[0].shape[0] / float(len(cls))
if clusterPerCent < 0.020:
silA.append(0.0)
silB.append(0.0)
else:
MidTermFeaturesNormTemp = MidTermFeaturesNorm[:,cls==c] # get subset of feature vectors
Yt = distance.pdist(MidTermFeaturesNormTemp.T) # compute average distance between samples that belong to the cluster (a values)
silA.append(numpy.mean(Yt)*clusterPerCent)
silBs = []
for c2 in range(iSpeakers): # compute distances from samples of other clusters
if c2!=c:
clusterPerCent2 = numpy.nonzero(cls==c2)[0].shape[0] / float(len(cls))
MidTermFeaturesNormTemp2 = MidTermFeaturesNorm[:,cls==c2]
Yt = distance.cdist(MidTermFeaturesNormTemp.T, MidTermFeaturesNormTemp2.T)
silBs.append(numpy.mean(Yt)*(clusterPerCent+clusterPerCent2)/2.0)
silBs = numpy.array(silBs)
silB.append(min(silBs)) # ... and keep the minimum value (i.e. the distance from the "nearest" cluster)
silA = numpy.array(silA);
silB = numpy.array(silB);
sil = []
for c in range(iSpeakers): # for each cluster (speaker)
sil.append( ( silB[c] - silA[c]) / (max(silB[c], silA[c])+0.00001) ) # compute silhouette
silAll.append(numpy.mean(sil)) # keep the AVERAGE SILLOUETTE
#silAll = silAll * (1.0/(numpy.power(numpy.array(sRange),0.5)))
imax = numpy.argmax(silAll) # position of the maximum sillouette value
nSpeakersFinal = sRange[imax] # optimal number of clusters
# generate the final set of cluster labels
# (important: need to retrieve the outlier windows: this is achieved by giving them the value of their nearest non-outlier window)
cls = numpy.zeros((numOfWindows,))
for i in range(numOfWindows):
j = numpy.argmin(numpy.abs(i-iNonOutLiers))
cls[i] = clsAll[imax][j]
# Post-process method 1: hmm smoothing
for i in range(1):
startprob, transmat, means, cov = trainHMM_computeStatistics(MidTermFeaturesNormOr, cls)
hmm = sklearn.hmm.GaussianHMM(startprob.shape[0], "diag", startprob, transmat) # hmm training
hmm.means_ = means; hmm.covars_ = cov
cls = hmm.predict(MidTermFeaturesNormOr.T)
# Post-process method 2: median filtering:
cls = scipy.signal.medfilt(cls, 13)
cls = scipy.signal.medfilt(cls, 11)
sil = silAll[imax] # final sillouette
classNames = ["speaker{0:d}".format(c) for c in range(nSpeakersFinal)];
# load ground-truth if available
gtFile = fileName.replace('.wav', '.segments'); # open for annotated file
if os.path.isfile(gtFile): # if groundturh exists
[segStart, segEnd, segLabels] = readSegmentGT(gtFile) # read GT data
flagsGT, classNamesGT = segs2flags(segStart, segEnd, segLabels, mtStep) # convert to flags
if PLOT:
fig = plt.figure()
if numOfSpeakers>0:
ax1 = fig.add_subplot(111)
else:
ax1 = fig.add_subplot(211)
ax1.set_yticks(numpy.array(range(len(classNames))))
ax1.axis((0, Duration, -1, len(classNames)))
ax1.set_yticklabels(classNames)
ax1.plot(numpy.array(range(len(cls)))*mtStep+mtStep/2.0, cls)
if os.path.isfile(gtFile):
if PLOT:
ax1.plot(numpy.array(range(len(flagsGT)))*mtStep+mtStep/2.0, flagsGT, 'r')
purityClusterMean, puritySpeakerMean = evaluateSpeakerDiarization(cls, flagsGT)
print "{0:.1f}\t{1:.1f}".format(100*purityClusterMean, 100*puritySpeakerMean)
if PLOT:
plt.title("Cluster purity: {0:.1f}% - Speaker purity: {1:.1f}%".format(100*purityClusterMean, 100*puritySpeakerMean) )
if PLOT:
plt.xlabel("time (seconds)")
#print sRange, silAll
if numOfSpeakers<=0:
plt.subplot(212)
plt.plot(sRange, silAll)
plt.xlabel("number of clusters");
plt.ylabel("average clustering's sillouette");
plt.show()
def speakerDiarization(fileName, numOfSpeakers, mtSize=2.0, mtStep=0.2, stWin=0.05, LDAdim=35, PLOT=False):
'''
ARGUMENTS:
- fileName: the name of the WAV file to be analyzed
- numOfSpeakers the number of speakers (clusters) in the recording (<=0 for unknown)
- mtSize (opt) mid-term window size
- mtStep (opt) mid-term window step
- stWin (opt) short-term window size
- LDAdim (opt) LDA dimension (0 for no LDA)
- PLOT (opt) 0 for not plotting the results 1 for plottingy
'''
[Fs, x] = audioBasicIO.readAudioFile(fileName)
x = audioBasicIO.stereo2mono(x)
Duration = len(x) / Fs
[Classifier1, MEAN1, STD1, classNames1, mtWin1, mtStep1, stWin1, stStep1, computeBEAT1] = aT.loadKNNModel(
"data/knnSpeakerAll")
[Classifier2, MEAN2, STD2, classNames2, mtWin2, mtStep2, stWin2, stStep2, computeBEAT2] = aT.loadKNNModel(
"data/knnSpeakerFemaleMale")
[MidTermFeatures, ShortTermFeatures] = aF.mtFeatureExtraction(x, Fs, mtSize * Fs, mtStep * Fs, round(Fs * stWin),
round(Fs * stWin * 0.5))
MidTermFeatures2 = numpy.zeros(
(MidTermFeatures.shape[0] + len(classNames1) + len(classNames2), MidTermFeatures.shape[1]))
for i in range(MidTermFeatures.shape[1]):
curF1 = (MidTermFeatures[:, i] - MEAN1) / STD1
curF2 = (MidTermFeatures[:, i] - MEAN2) / STD2
[Result, P1] = aT.classifierWrapper(Classifier1, "knn", curF1)
[Result, P2] = aT.classifierWrapper(Classifier2, "knn", curF2)
MidTermFeatures2[0:MidTermFeatures.shape[0], i] = MidTermFeatures[:, i]
MidTermFeatures2[MidTermFeatures.shape[0]:MidTermFeatures.shape[0] + len(classNames1), i] = P1 + 0.0001
MidTermFeatures2[MidTermFeatures.shape[0] + len(classNames1)::, i] = P2 + 0.0001
MidTermFeatures = MidTermFeatures2 # TODO
# SELECT FEATURES:
# iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20]; # SET 0A
# iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20, 99,100]; # SET 0B
# iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,
# 97,98, 99,100]; # SET 0C
iFeaturesSelect = [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52,
53] # SET 1A
# iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53, 99,100]; # SET 1B
# iFeaturesSelect = [8,9,10,11,12,13,14,15,16,17,18,19,20,41,42,43,44,45,46,47,48,49,50,51,52,53, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 1C
# iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53]; # SET 2A
# iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53, 99,100]; # SET 2B
# iFeaturesSelect = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98, 99,100]; # SET 2C
# iFeaturesSelect = range(100); # SET 3
# MidTermFeatures += numpy.random.rand(MidTermFeatures.shape[0], MidTermFeatures.shape[1]) * 0.000000010
MidTermFeatures = MidTermFeatures[iFeaturesSelect, :]
(MidTermFeaturesNorm, MEAN, STD) = aT.normalizeFeatures([MidTermFeatures.T])
MidTermFeaturesNorm = MidTermFeaturesNorm[0].T
numOfWindows = MidTermFeatures.shape[1]
# remove outliers:
DistancesAll = numpy.sum(distance.squareform(distance.pdist(MidTermFeaturesNorm.T)), axis=0)
MDistancesAll = numpy.mean(DistancesAll)
iNonOutLiers = numpy.nonzero(DistancesAll < 1.2 * MDistancesAll)[0]
# TODO: Combine energy threshold for outlier removal:
# EnergyMin = numpy.min(MidTermFeatures[1,:])
# EnergyMean = numpy.mean(MidTermFeatures[1,:])
# Thres = (1.5*EnergyMin + 0.5*EnergyMean) / 2.0
# iNonOutLiers = numpy.nonzero(MidTermFeatures[1,:] > Thres)[0]
# print iNonOutLiers
perOutLier = (100.0 * (numOfWindows - iNonOutLiers.shape[0])) / numOfWindows
MidTermFeaturesNormOr = MidTermFeaturesNorm
MidTermFeaturesNorm = MidTermFeaturesNorm[:, iNonOutLiers]
# LDA dimensionality reduction:
if LDAdim > 0:
# [mtFeaturesToReduce, _] = aF.mtFeatureExtraction(x, Fs, mtSize * Fs, stWin * Fs, round(Fs*stWin), round(Fs*stWin));
# extract mid-term features with minimum step:
mtWinRatio = int(round(mtSize / stWin))
mtStepRatio = int(round(stWin / stWin))
mtFeaturesToReduce = []
numOfFeatures = len(ShortTermFeatures)
numOfStatistics = 2
# for i in range(numOfStatistics * numOfFeatures + 1):
for i in range(numOfStatistics * numOfFeatures):
mtFeaturesToReduce.append([])
for i in range(numOfFeatures): # for each of the short-term features:
curPos = 0
N = len(ShortTermFeatures[i])
while (curPos < N):
N1 = curPos
N2 = curPos + mtWinRatio
if N2 > N:
N2 = N
curStFeatures = ShortTermFeatures[i][N1:N2]
mtFeaturesToReduce[i].append(numpy.mean(curStFeatures))
mtFeaturesToReduce[i + numOfFeatures].append(numpy.std(curStFeatures))
curPos += mtStepRatio
mtFeaturesToReduce = numpy.array(mtFeaturesToReduce)
mtFeaturesToReduce2 = numpy.zeros(
(mtFeaturesToReduce.shape[0] + len(classNames1) + len(classNames2), mtFeaturesToReduce.shape[1]))
for i in range(mtFeaturesToReduce.shape[1]):
curF1 = (mtFeaturesToReduce[:, i] - MEAN1) / STD1
curF2 = (mtFeaturesToReduce[:, i] - MEAN2) / STD2
[Result, P1] = aT.classifierWrapper(Classifier1, "knn", curF1)
[Result, P2] = aT.classifierWrapper(Classifier2, "knn", curF2)
mtFeaturesToReduce2[0:mtFeaturesToReduce.shape[0], i] = mtFeaturesToReduce[:, i]
mtFeaturesToReduce2[mtFeaturesToReduce.shape[0]:mtFeaturesToReduce.shape[0] + len(classNames1),
i] = P1 + 0.0001
mtFeaturesToReduce2[mtFeaturesToReduce.shape[0] + len(classNames1)::, i] = P2 + 0.0001
mtFeaturesToReduce = mtFeaturesToReduce2
mtFeaturesToReduce = mtFeaturesToReduce[iFeaturesSelect, :]
# mtFeaturesToReduce += numpy.random.rand(mtFeaturesToReduce.shape[0], mtFeaturesToReduce.shape[1]) * 0.0000010
(mtFeaturesToReduce, MEAN, STD) = aT.normalizeFeatures([mtFeaturesToReduce.T])
mtFeaturesToReduce = mtFeaturesToReduce[0].T
# DistancesAll = numpy.sum(distance.squareform(distance.pdist(mtFeaturesToReduce.T)), axis=0)
# MDistancesAll = numpy.mean(DistancesAll)
# iNonOutLiers2 = numpy.nonzero(DistancesAll < 3.0*MDistancesAll)[0]
# mtFeaturesToReduce = mtFeaturesToReduce[:, iNonOutLiers2]
Labels = numpy.zeros((mtFeaturesToReduce.shape[1],))
LDAstep = 1.0
LDAstepRatio = LDAstep / stWin
# print LDAstep, LDAstepRatio
for i in range(Labels.shape[0]):
Labels[i] = int(i * stWin / LDAstepRatio);
clf = LDA(n_components=LDAdim)
clf.fit(mtFeaturesToReduce.T, Labels, tol=0.000001)
MidTermFeaturesNorm = (clf.transform(MidTermFeaturesNorm.T)).T
if numOfSpeakers <= 0:
sRange = range(2, 10)
else:
sRange = [numOfSpeakers]
clsAll = []
silAll = []
centersAll = []
for iSpeakers in sRange:
cls, means, steps = mlpy.kmeans(MidTermFeaturesNorm.T, k=iSpeakers, plus=True) # perform k-means clustering
# YDist = distance.pdist(MidTermFeaturesNorm.T, metric='euclidean')
# print distance.squareform(YDist).shape
# hc = mlpy.HCluster()
# hc.linkage(YDist)
# cls = hc.cut(14.5)
# print cls
# Y = distance.squareform(distance.pdist(MidTermFeaturesNorm.T))
clsAll.append(cls)
centersAll.append(means)
silA = [];
silB = []
for c in range(iSpeakers): # for each speaker (i.e. for each extracted cluster)
clusterPerCent = numpy.nonzero(cls == c)[0].shape[0] / float(len(cls))
if clusterPerCent < 0.020:
silA.append(0.0)
silB.append(0.0)
else:
MidTermFeaturesNormTemp = MidTermFeaturesNorm[:, cls == c] # get subset of feature vectors
Yt = distance.pdist(
MidTermFeaturesNormTemp.T) # compute average distance between samples that belong to the cluster (a values)
silA.append(numpy.mean(Yt) * clusterPerCent)
silBs = []
for c2 in range(iSpeakers): # compute distances from samples of other clusters
if c2 != c:
clusterPerCent2 = numpy.nonzero(cls == c2)[0].shape[0] / float(len(cls))
MidTermFeaturesNormTemp2 = MidTermFeaturesNorm[:, cls == c2]
Yt = distance.cdist(MidTermFeaturesNormTemp.T, MidTermFeaturesNormTemp2.T)
silBs.append(numpy.mean(Yt) * (clusterPerCent + clusterPerCent2) / 2.0)
silBs = numpy.array(silBs)
silB.append(min(silBs)) # ... and keep the minimum value (i.e. the distance from the "nearest" cluster)
silA = numpy.array(silA)
silB = numpy.array(silB)
sil = []
for c in range(iSpeakers): # for each cluster (speaker)
sil.append((silB[c] - silA[c]) / (max(silB[c], silA[c]) + 0.00001)) # compute silhouette
silAll.append(numpy.mean(sil)) # keep the AVERAGE SILLOUETTE
# silAll = silAll * (1.0/(numpy.power(numpy.array(sRange),0.5)))
imax = numpy.argmax(silAll) # position of the maximum sillouette value
nSpeakersFinal = sRange[imax] # optimal number of clusters
return nSpeakersFinal
