def extract_patient(json_object):
field_paths = {
'patient_id': ['id'],
'first_name': ['name', 0, 'given', 0],
'last_name': ['name', 0, 'family'],
'gender': ['gender'],
'birth': ['birthDate'],
'death': ['deceasedDateTime'],
}
field_defaults = {
'death': '3000-01-01T00:00:00+00:00',
}
json_object = atg.extract_fields(json_object=json_object,
field_paths=field_paths,
field_defaults=field_defaults)
json_object['name'] = remove_digits(json_object['first_name'] + ' ' +
json_object['last_name'])
json_object.pop('first_name')
json_object.pop('last_name')
return json_object
def extract_condition_encounter(json_object):
field_paths = {
'from': ['id'],
'to': ['encounter', 'reference'],
}
json_object = atg.extract_fields(json_object=json_object,
field_paths=field_paths)
json_object = {
'from': json_object['from'],
'to': json_object['to'].replace('Encounter/', '')
}
return json_object
def extract_patient_condition(json_object):
field_paths = {
'from': ['id'],
'to': ['subject', 'reference'],
}
json_object = atg.extract_fields(json_object=json_object,
field_paths=field_paths)
json_object = {
'from': json_object['from'],
'to': json_object['to'].replace('Patient/', '')
}
return json_object
def extract_encounter_practitioner(json_object):
field_paths = {
'from': ['id'],
'to': ['participant', 0, 'individual', 'reference'],
}
json_object = atg.extract_fields(json_object=json_object,
field_paths=field_paths)
json_object = {
'from': json_object['from'],
'to': json_object['to'].replace('Practitioner/', '')
}
return json_object
def extract_practitioner(json_object):
field_paths = {
'provider_id': ['practitioner', 'reference'],
'name': ['practitioner', 'display'],
'specialty': ['specialty', 0, 'text']
}
json_object = atg.extract_fields(json_object=json_object,
field_paths=field_paths)
json_object['provider_id'] = json_object['provider_id'].replace(
'Practitioner/', '')
json_object['name'] = remove_digits(json_object['name'])
return json_object