def show_uverskyPlot(
self,
label="",
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Generates the Uversky phase diagram (hydropathy vs NCPR), places
this sequence on that plot, and creates it on the screen
INPUT:
--------------------------------------------------------------------------------
label | A label for the point on the phase diagram
title | Plot title (DEFAULT = 'Uversky plot')
legendOn | Boolean for if the figure legend should be displayed or not
xLim | Max value for the x axis (mean net charge) (DEFAULT = 1)
yLim | Max value for the y axis (hydropathy) (DEFAULT = 1)
fontSize | Size of font for label (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
If the argument getFig is False (which it is by default) then the Uversky plot appears on
the screen. If getFig is set to True then the function returns a matplotlib plt object, which
can be further manipulated.
"""
if getFig:
return plotting.show_single_uverskyPlot(
self.get_uversky_hydropathy(),
self.get_mean_net_charge(),
label,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
else:
plotting.show_single_uverskyPlot(
self.get_uversky_hydropathy(),
self.get_mean_net_charge(),
label,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_single_uverskyPlot(
hydropathy,
mean_net_charge,
label="",
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plots a single sequence on the Uversky plot (hydropathy vs. mean net charge)
INPUT:
--------------------------------------------------------------------------------
hydropathy | Mean hydropathy for sequence
mean_net_charge | Absolute magnitude of the protein's net charge divided by sequence length
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Uversky plot")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but an annotated Uversky plot should be generated on screen
"""
return plotting.show_single_uverskyPlot(
hydropathy,
mean_net_charge,
label,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_single_uverskyPlot(hydropathy,
mean_net_charge,
label="",
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plots a single sequence on the Uversky plot (hydropathy vs. mean net charge)
INPUT:
--------------------------------------------------------------------------------
hydropathy | Mean hydropathy for sequence
mean_net_charge | Absolute magnitude of the protein's net charge divided by sequence length
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Uversky plot")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but an annotated Uversky plot should be generated on screen
"""
return plotting.show_single_uverskyPlot(hydropathy, mean_net_charge, label,
title, legendOn, xLim, yLim,
fontSize, getFig)
