def setUp(self):
# blank/temporary HDF5 file
self.f = FauxHDFBuilder()
# fill the MSI group for testing
self.f['MSI'].create_group('g1')
self.f['MSI'].create_group('g2')
# correct 'command list' dataset
dtype = np.dtype([('Shot number', np.int32),
('Command index', np.int8)])
data = np.empty((5, ), dtype=dtype)
self.f['MSI'].create_dataset('d1', data=data)
# dataset missing 'Command index'
dtype = np.dtype([('Shot number', np.int32),
('Not command index', np.int8)])
data = np.empty((5, ), dtype=dtype)
self.f['MSI'].create_dataset('d2', data=data)
# dataset missing 'Command index' wrong shape and size
dtype = np.dtype([('Shot number', np.int32),
('Command index', np.float16, (2, ))])
data = np.empty((5, ), dtype=dtype)
self.f['MSI'].create_dataset('d3', data=data)
def setUpClass(cls):
# skip tests if in MSIDiagnosticTestCase
if cls is DigitizerTestCase:
raise ut.SkipTest("In DigitizerTestCase, " "skipping base tests")
super().setUpClass()
# create HDF5 file
cls.f = FauxHDFBuilder()
def setUpClass(cls):
# skip tests if in ControlTestCase
if cls is ControlTestCase:
raise ut.SkipTest("In ControlTestCase, skipping base tests")
super().setUpClass()
# create HDF5 file
cls.f = FauxHDFBuilder()
def setUp(self):
# blank/temporary HDF5 file
self.f = FauxHDFBuilder()
# fill the MSI group for testing
self.f["MSI"].create_group("g1")
self.f["MSI"].create_group("g2")
# correct 'command list' dataset
dtype = np.dtype([("Shot number", np.int32), ("Command index", np.int8)])
data = np.empty((5,), dtype=dtype)
self.f["MSI"].create_dataset("d1", data=data)
# dataset missing 'Command index'
dtype = np.dtype([("Shot number", np.int32), ("Not command index", np.int8)])
data = np.empty((5,), dtype=dtype)
self.f["MSI"].create_dataset("d2", data=data)
# dataset missing 'Command index' wrong shape and size
dtype = np.dtype([("Shot number", np.int32), ("Command index", np.float16, (2,))])
data = np.empty((5,), dtype=dtype)
self.f["MSI"].create_dataset("d3", data=data)
def setUpClass(cls) -> None:
# create HDF5 file
super().setUpClass()
cls.f = FauxHDFBuilder()
class TestControlTemplates(ut.TestCase):
"""
Test class for HDFMapControlTemplate and
HDFMapControlCLTemplate.
"""
def setUp(self):
# blank/temporary HDF5 file
self.f = FauxHDFBuilder()
# fill the MSI group for testing
self.f['MSI'].create_group('g1')
self.f['MSI'].create_group('g2')
# correct 'command list' dataset
dtype = np.dtype([('Shot number', np.int32),
('Command index', np.int8)])
data = np.empty((5, ), dtype=dtype)
self.f['MSI'].create_dataset('d1', data=data)
# dataset missing 'Command index'
dtype = np.dtype([('Shot number', np.int32),
('Not command index', np.int8)])
data = np.empty((5, ), dtype=dtype)
self.f['MSI'].create_dataset('d2', data=data)
# dataset missing 'Command index' wrong shape and size
dtype = np.dtype([('Shot number', np.int32),
('Command index', np.float16, (2, ))])
data = np.empty((5, ), dtype=dtype)
self.f['MSI'].create_dataset('d3', data=data)
def tearDown(self):
"""Cleanup temporary HDF5 file"""
self.f.cleanup()
def group(self):
"""HDF5 group for testing"""
return self.f['MSI']
@staticmethod
def dummy_map(template, group):
"""A template mapping of a HDF5 group"""
# Note: Since the template classes contain abstract methods that
# are intended to be overwritten, those methods must be
# overwritten before instantiating an object.
#
# retrieve desired template class
template_cls = DummyTemplates[template].value
# override abstract methods
# - all abstract methods will now return NotImplemented instead
# of raising NotImplementedError
#
new_dict = template_cls.__dict__.copy()
for abstractmethod in template_cls.__abstractmethods__:
new_dict[abstractmethod] = lambda *args: NotImplemented
# define new template class
new_template_class = type("dummy_%s" % template_cls.__name__,
(template_cls, ), new_dict)
# return map
return new_template_class(group)
def test_not_h5py_group(self):
"""Test error if object to map is not h5py.Group"""
with self.assertRaises(TypeError):
self.dummy_map('default', None)
self.dummy_map('cl', None)
def test_structure(self):
# test HDFMapControlTemplate
self.assertControlTemplate(self.dummy_map('default', self.group()),
self.group())
# test HDFMapControlCLTemplate
self.assertControlCLTemplate(self.dummy_map('cl', self.group()),
self.group())
def assertControlTemplate(self, _map, _group: h5py.Group):
# check instance
self.assertIsInstance(_map, HDFMapControlTemplate)
# check attribute existence
attrs = ('info', 'configs', 'contype', 'dataset_names', 'group',
'has_command_list', 'one_config_per_dset', 'subgroup_names',
'device_name', 'construct_dataset_name', '_build_configs')
for attr in attrs:
self.assertTrue(hasattr(_map, attr))
# -- check 'info' ----
# assert is a dict
self.assertIsInstance(_map.info, dict)
# assert required keys
self.assertIn('group name', _map.info)
self.assertIn('group path', _map.info)
self.assertIn('contype', _map.info)
# assert values
self.assertEqual(_map.info['group name'],
os.path.basename(_group.name))
self.assertEqual(_map.info['group path'], _group.name)
self.assertEqual(_map.info['contype'], NotImplemented)
# -- check 'configs' ----
self.assertIsInstance(_map.configs, dict)
self.assertEqual(len(_map.configs), 0)
# -- check 'one_config_per_dset' ----
# empty configs dict
self.assertFalse(_map.one_config_per_dset)
# one config for three datasets
with mock.patch.dict(_map._configs, {'config1': {}}):
self.assertFalse(_map.one_config_per_dset)
# 3 configs for 3 datasets
with mock.patch.dict(_map._configs, {
'config1': {},
'config2': {},
'config3': {}
}):
self.assertTrue(_map.one_config_per_dset)
# -- check 'has_command_list' ----
# empty configs dict
self.assertFalse(_map.has_command_list)
# add artificial 'command list'
with mock.patch.dict(_map.configs, {
'config1': {},
'config2': {
'command list': ('start', )
}
}):
self.assertTrue(_map.has_command_list)
# -- check other attributes ----
self.assertEqual(_map.contype, _map.info['contype'])
self.assertEqual(_map.group, _group)
self.assertEqual(_map.device_name, _map.info['group name'])
self.assertEqual(sorted(_map.dataset_names), sorted(['d1', 'd2',
'd3']))
self.assertEqual(sorted(_map.subgroup_names), sorted(['g1', 'g2']))
# -- check abstract methods ----
# Note: `self.dummy_map` overrides all abstract methods to
# return NotImplemented values
#
self.assertEqual(_map.construct_dataset_name(), NotImplemented)
self.assertEqual(_map._build_configs(), NotImplemented)
def assertControlCLTemplate(self, _map, _group: h5py.Group):
# check instance
self.assertIsInstance(_map, HDFMapControlCLTemplate)
# re-assert HDFMapControlTemplate structure
self.assertControlTemplate(_map, _group)
# check attribute existence
attrs = (
'_default_re_patterns',
'clparse',
'_construct_state_values_dict',
'reset_state_values_config',
'set_state_values_config',
'_default_state_values_dict',
)
for attr in attrs:
self.assertTrue(hasattr(_map, attr))
# -- check '_default_re_patterns' ----
self.assertIsInstance(_map._default_re_patterns, tuple)
self.assertEqual(len(_map._default_re_patterns), 0)
# -- check 'clparse' ----
with mock.patch.dict(_map._configs,
{'config1': {
'command list': ('VOLT 25.0', )
}}):
self.assertIsInstance(_map.clparse('config1'), CLParse)
# -- check '_construct_state_values_dict' ----
cl = (
'VOLT 20.0',
'VOLT 25.0',
'VOLT 30.0',
)
config_name = 'config1'
configs_dict = {
config_name: {
'command list': cl,
'dset paths': ('/MSI/d1', )
}
}
clparse_dict = {
'VOLT': {
'command list': (20.0, 25.0, 30.0),
'cl str': cl,
'dtype': np.float64
}
}
pattern = \
r'(?P<VOLT>(\bVOLT\s)(?P<VAL>(\d+\.\d*|\.\d+|\d+\b)))'
# run tests on a mock _map._configs
with mock.patch.dict(_map._configs, configs_dict):
# mock CLParse attribute 'apply_patterns'
with mock.patch.object(CLParse, 'apply_patterns', ) as \
mock_apply_pat:
# 'apply_patterns' is unsuccessful
mock_apply_pat.return_value = (False, {})
sv_dict = _map._construct_state_values_dict(
config_name, [pattern])
self.assertFalse(bool(sv_dict))
# 'apply_patterns' is successful
mock_apply_pat.return_value = (True, clparse_dict)
sv_dict = _map._construct_state_values_dict(
config_name, [pattern])
self.assertTrue(bool(sv_dict))
self.assertIsInstance(sv_dict, dict)
self.assertEqual(len(sv_dict), 1)
self.assertEqual(sv_dict['VOLT']['dset paths'],
configs_dict[config_name]['dset paths'])
self.assertEqual(sv_dict['VOLT']['dset field'],
('Command index', ))
self.assertEqual(sv_dict['VOLT']['shape'], ())
self.assertEqual(sv_dict['VOLT']['dtype'],
clparse_dict['VOLT']['dtype'])
self.assertEqual(sv_dict['VOLT']['command list'],
clparse_dict['VOLT']['command list'])
self.assertEqual(sv_dict['VOLT']['cl str'],
clparse_dict['VOLT']['cl str'])
# the 'dset_paths' dataset does NOT have 'Command index'
configs_dict[config_name]['dset paths'] = ('/MSI/d2', )
with self.assertWarns(UserWarning):
sv_dict = _map._construct_state_values_dict(
config_name, [pattern])
self.assertFalse(bool(sv_dict))
# the 'dset_paths' dataset 'Command index' field does
# NOT have correct shape or dtype
configs_dict[config_name]['dset paths'] = ('/MSI/d3', )
with self.assertWarns(UserWarning):
sv_dict = _map._construct_state_values_dict(
config_name, [pattern])
self.assertFalse(bool(sv_dict))
# -- check 'reset_state_values_config' ----
cl = ('VOLT 20.0', 'VOLT 25.0', 'VOLT 30.0')
pattern = \
r'(?P<VOLT>(\bVOLT\s)(?P<VAL>(\d+\.\d*|\.\d+|\d+\b)))'
config_name = 'config1'
configs_dict = {
config_name: {
'command list': cl,
'dset paths': ('/MSI/d1', ),
'shotnum': {},
'state values': {}
}
}
dsv_dict = {
'command': {
'command list': cl,
'cl str': cl,
're pattern': None,
'dset paths': configs_dict[config_name]['dset paths'],
'dset field': ('Command index', ),
'shape': (),
'dtype': np.dtype((np.unicode_, 10))
}
}
sv_dict = {
'VOLT': {
'command list': (20.0, 25.0, 30.0),
'cl str': cl,
're pattern': re.compile(pattern),
'dset paths': configs_dict[config_name]['dset paths'],
'dset field': ('Command index', ),
'shape': (),
'dtype': np.float64
}
}
# mock _map._configs
# mock the '_default_state_values_dict' method
with mock.patch.dict(_map._configs, configs_dict), \
mock.patch.object(_map, '_default_state_values_dict') \
as mock_dsvdict:
mock_dsvdict.return_value = dsv_dict
# kwarg apply_patterns=False (default behavior)
_map.reset_state_values_config(config_name, apply_patterns=False)
self.assertEqual(_map._configs[config_name]['state values'],
dsv_dict)
# kwarg apply_patterns=True
# mock '_construct_state_values_dict'
with mock.patch.object(
_map, '_construct_state_values_dict') as mock_csvd:
# '_construct_state_values_dict' returns {}
mock_csvd.return_value = {}
_map._configs[config_name]['state values'] = {}
_map.reset_state_values_config(config_name,
apply_patterns=True)
self.assertEqual(_map._configs[config_name]['state values'],
dsv_dict)
# '_construct_state_values_dict' returns sv_dict
mock_csvd.return_value = sv_dict
_map._configs[config_name]['state values'] = {}
_map.reset_state_values_config(config_name,
apply_patterns=True)
self.assertEqual(_map._configs[config_name]['state values'],
sv_dict)
# -- check 'set_state_values_config' ----
cl = ('VOLT 20.0', 'VOLT 25.0', 'VOLT 30.0')
pattern = \
r'(?P<VOLT>(\bVOLT\s)(?P<VAL>(\d+\.\d*|\.\d+|\d+\b)))'
config_name = 'config1'
configs_dict = {
config_name: {
'command list': cl,
'dset paths': ('/MSI/d1', ),
'shotnum': {},
'state values': {}
}
}
sv_dict = {
'VOLT': {
'command list': (20.0, 25.0, 30.0),
'cl str': cl,
're pattern': re.compile(pattern),
'dset paths': configs_dict[config_name]['dset paths'],
'dset field': ('Command index', ),
'shape': (),
'dtype': np.float64
}
}
# mock _map._configs
# mock the '_construct_state_values_dict' method
with mock.patch.dict(_map._configs, configs_dict), \
mock.patch.object(_map, '_construct_state_values_dict') \
as mock_csvd:
# '_construct_state_values_dict' fails and returns {}
mock_csvd.return_value = {}
with self.assertWarns(UserWarning):
_map.set_state_values_config(config_name, [pattern])
self.assertEqual(_map._configs[config_name]['state values'],
{})
# '_construct_state_values_dict' fails and returns sv_dict
mock_csvd.return_value = sv_dict
_map._configs[config_name]['state values'] = {}
_map.set_state_values_config(config_name, [pattern])
self.assertEqual(_map._configs[config_name]['state values'],
sv_dict)
# -- check abstract methods ----
# Note: `self.dummy_map` overrides all abstract methods to
# return NotImplemented values
#
self.assertEqual(_map._default_state_values_dict(''), NotImplemented)
def setUpClass(cls):
# create HDF5 file
super().setUpClass()
cls.f = FauxHDFBuilder()
cls.f.create_group(cls.DEVICE_PATH)
def setUp(self):
self.f = FauxHDFBuilder()
class TestHDFMapMSI(ut.TestCase):
"""Test class for HDFMapMSI"""
# What to test?
# X 1. returned object is a dictionary
# X 2. if input is not h5py.Group instance, then TypeError is
# raised
# X 3. existence of:
# a. mappable_devices
# - check it's a tuple
# X 4. MSI group has no sub-groups
# - dict is empty
# X 5. MSI has unknown & known sub-groups
# - only known group is added to dictionary
# X 6. MSI has a known sub-group, but mapping fails
# - failed map should not be added to to dict
# X 7. all diagnostics are mappable, but not all mappable
# diagnostics are included
# X 8. MSI group has a diagnostic dataset
#
def setUp(self):
self.f = FauxHDFBuilder()
def tearDown(self):
self.f.cleanup()
@property
def map(self):
"""Map of MSI Group"""
return self.map_msi(self.msi_group)
@property
def msi_group(self):
"""MSI group"""
return self.f['MSI']
@staticmethod
def map_msi(group):
"""Mapping function"""
return HDFMapMSI(group)
def test_not_h5py_group(self):
"""Test error if object to map is not h5py.Group"""
with self.assertRaises(TypeError):
self.map_msi(None)
def test_msi_scenarios(self):
"""
Test various scenarios of mappable and non-mappable diagnostics
in the MSI group
"""
# the MSI group is empty ----
self.f.remove_all_modules()
_map = self.map
self.assertBasics(_map)
self.assertEqual(_map, {})
# the MSI group has all mappable diagnostics ----
self.f.remove_all_modules()
self.f.add_module('Discharge', {})
self.f.add_module('Heater', {})
self.f.add_module('Magnetic field', {})
_map = self.map
self.assertBasics(_map)
# check all diagnostics were mapped
self.assertEqual(len(_map), 3)
self.assertIn('Discharge', _map)
self.assertIn('Heater', _map)
self.assertIn('Magnetic field', _map)
# the MSI group has mappable and unknown diagnostics ----
self.f.remove_all_modules()
self.f.add_module('Discharge', {})
self.f.add_module('Heater', {})
self.f.add_module('Magnetic field', {})
self.f['MSI'].create_group('Not known')
_map = self.map
self.assertBasics(_map)
# check correct diagnostics were mapped
self.assertEqual(len(_map), 3)
self.assertIn('Discharge', _map)
self.assertIn('Heater', _map)
self.assertIn('Magnetic field', _map)
self.assertNotIn('Not known', _map)
# delete unknown group
del self.f['MSI/Not known']
# the MSI group has a dataset ----
self.f.remove_all_modules()
self.f.add_module('Discharge', {})
self.f.add_module('Heater', {})
self.f.add_module('Magnetic field', {})
data = np.empty((2, 100), dtype=np.float32)
self.f['MSI'].create_dataset('A dataset', data=data)
_map = self.map
self.assertBasics(_map)
# check correct diagnostics were mapped
self.assertEqual(len(_map), 3)
self.assertIn('Discharge', _map)
self.assertIn('Heater', _map)
self.assertIn('Magnetic field', _map)
self.assertNotIn('A dataset', _map)
# delete dataset
del self.f['MSI/A dataset']
# the MSI group has a mappable diagnostic ----
# but mapping fails ----
self.f.remove_all_modules()
self.f.add_module('Discharge', {})
self.f.add_module('Heater', {})
# remove a dataset from 'Discharge'
# - this will cause mapping of 'Discharge' to fail
#
del self.f['MSI/Discharge/Discharge current']
# check map
_map = self.map
self.assertBasics(_map)
# check correct diagnostics were mapped
self.assertEqual(len(_map), 1)
self.assertIn('Heater', _map)
self.assertNotIn('Discharge', _map)
def assertBasics(self, msi_map: HDFMapMSI):
# mapped object is a dictionary
self.assertIsInstance(msi_map, dict)
# all dict items are a mapping class
for val in msi_map.values():
self.assertIsInstance(val, HDFMapMSITemplate)
# look for map attributes
self.assertTrue(hasattr(msi_map, 'mappable_devices'))
# check attribute types
self.assertIsInstance(msi_map.mappable_devices, tuple)
class TestHDFMapControls(ut.TestCase):
"""Test class for HDFMapControls"""
# What to test?
# X 1. returned object is a dictionary
# X 2. if input is not h5py.Group instance, then TypeError is
# raised
# X 3. existence of:
# a. mappable_devices
# - check it's a tuple
# X 4. data group has no sub-groups
# - dict is empty
# X 5. data group has unknown & known control device sub-groups
# - only known group is added to dictionary
# 6. data group has a known control sub-group, but mapping fails
# - failed map should not be added to to dict
# X 7. all control devices are mappable, but not all mappable
# controls are included
# X 8. data group has a dataset
#
def setUp(self):
self.f = FauxHDFBuilder()
def tearDown(self):
self.f.cleanup()
@property
def map(self):
"""Map of Control Group"""
return self.map_control(self.data_group)
@property
def data_group(self):
"""MSI group"""
return self.f['Raw data + config']
@staticmethod
def map_control(group):
"""Mapping function"""
return HDFMapControls(group)
def test_not_h5py_group(self):
"""Test error if object to map is not h5py.Group"""
with self.assertRaises(TypeError):
self.map_control(None)
def test_msi_scenarios(self):
"""
Test various scenarios of mappable and non-mappable control
device groups.
"""
# the data group has NO control device groups ----
self.f.remove_all_modules()
_map = self.map
self.assertBasics(_map)
self.assertEqual(_map, {})
# the control group has all mappable devices ----
self.f.remove_all_modules()
self.f.add_module('6K Compumotor', {})
self.f.add_module('Waveform', {})
_map = self.map
self.assertBasics(_map)
# check all controls were mapped
self.assertEqual(len(_map), 2)
self.assertIn('6K Compumotor', _map)
self.assertIn('Waveform', _map)
# the data group has mappable and unknown controls ----
self.f.remove_all_modules()
self.f.add_module('6K Compumotor', {})
self.f.add_module('Waveform', {})
self.f['Raw data + config'].create_group('Not known')
_map = self.map
self.assertBasics(_map)
# check correct diagnostics were mapped
self.assertEqual(len(_map), 2)
self.assertIn('6K Compumotor', _map)
self.assertIn('Waveform', _map)
self.assertNotIn('Not known', _map)
# delete unknown group
del self.f['Raw data + config/Not known']
# the data group has a dataset ----
self.f.remove_all_modules()
self.f.add_module('Waveform', {})
data = np.empty((2, 100), dtype=np.float32)
self.f['Raw data + config'].create_dataset('A dataset',
data=data)
_map = self.map
self.assertBasics(_map)
# check correct diagnostics were mapped
self.assertEqual(len(_map), 1)
self.assertIn('Waveform', _map)
self.assertNotIn('A dataset', _map)
# delete dataset
del self.f['Raw data + config/A dataset']
# the data group has a mappable control devices ----
# but mapping fails ----
self.f.remove_all_modules()
self.f.add_module('6K Compumotor', {})
self.f.add_module('Waveform', {})
# remove a dataset from 'Waveform'
# - this will cause mapping of 'Waveform' to fail
#
del self.f['Raw data + config/Waveform/config01']
# check map
_map = self.map
self.assertBasics(_map)
# check correct controls were mapped
self.assertEqual(len(_map), 1)
self.assertIn('6K Compumotor', _map)
self.assertNotIn('Waveform', _map)
def assertBasics(self, _map: HDFMapControls):
# mapped object is a dictionary
self.assertIsInstance(_map, dict)
# all dict items are a mapping class
for val in _map.values():
self.assertIsInstance(val, (HDFMapControlTemplate,
HDFMapControlCLTemplate))
# look for map attributes
self.assertTrue(
hasattr(_map, 'mappable_devices'))
# check attribute types
self.assertIsInstance(_map.mappable_devices,
tuple)
