def __init__(self, parent, id): # object to store our cacluations over time self.plasmidstore = plasmidstore() self.radius = 25 # cairo unit self.radiusI = self.radius - 0.013 * self.radius # cairo unit self.radiusO = self.radius + 0.013 * self.radius # cairo unit self.radiusLabels = self.radius + 17 # cairo unit self.arrowWidth = 1.8 # cairo unit self.labelHeight = 12 # pixel self.Highlight = None # store who to highlight self.enzymeGap = "-|-" # seperator to make unique hitname less unique #self.EnzymeMonitor = Monitor() # start the window DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY) # bind events self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp) self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown) self.Bind(wx.EVT_MOTION, self.OnMotion) self.Bind(wx.EVT_LEFT_DCLICK, self.OnLeftDouble) return None
def __init__(self, parent, id): DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY) genbank.dna_selection = (1,1) self.centre_x = 0 self.centre_y = 0 self.highlighted_feature = False self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown) self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp) self.Bind(wx.EVT_RIGHT_UP, self.OnRightUp) self.Bind(wx.EVT_MOTION, self.OnMotion) self.Bind(wx.EVT_LEFT_DCLICK, self.OnLeftDouble) #determing which listening group from which to recieve messages about UI updates self.listening_group = 'from_feature_list' #needs to be assigned or will raise an error pub.Publisher.subscribe(self.listen_to_updateUI, self.listening_group) self.listening_group2 = 'from_feature_edit' pub.Publisher.subscribe(self.listen_to_updateUI, self.listening_group2) self.listening_group3 = 'from_dna_edit' pub.Publisher.subscribe(self.listen_to_updateUI, self.listening_group3) self.listening_group4 = 'from_main' pub.Publisher.subscribe(self.listen_to_updateUI, self.listening_group4) self.listening_group5 = 'private_group_for_those_that_affect_DNA_selection_from_DNA_editor' pub.Publisher.subscribe(self.listen_to_updateUI, self.listening_group5)
def __init__(self, parent, id):
# load options into self.opt
self.opt = options.options()
# variables to store current events like highlight etc.
# for hover and click
self.hittest = {} # to store the hittest paths
self.Highlight = None # hightlight this on move
self.HighlightClick = None # hightlight constantly
# for selection
self.selectionDrawing = []
self.selectionDrawingDirection = "right"
self.selectionDrawingDiff = 0
# initialise the window
DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY)
self.parent = parent
genbank.dna_selection = (1,1)
self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown)
self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp)
#self.Bind(wx.EVT_RIGHT_UP, self.OnRightUp)
self.Bind(wx.EVT_MOTION, self.OnMotion)
def __init__(self, parent, id): DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY) self.parent = parent genbank.dna_selection = (1,1) self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown) self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp) self.Bind(wx.EVT_RIGHT_UP, self.OnRightUp) self.Bind(wx.EVT_MOTION, self.OnMotion) self.Bind(wx.EVT_LEFT_DCLICK, self.OnLeftDouble)
def __init__(self, parent, id):
#parent
self.parent = parent
# get data
self.dna = genbank.gb.GetDNA()
self.cdna = genbank.gb.GetDNA()
# settings for the editor
self.sY = 60 # offset top
self.dX = 8 # border left and right
self.textSpacing = 80 # seperation of lines
self.fontsize = 9 # line size
self.lineGap = 6
# interactive cursor
self.PositionPointer = 1
self.PositionPointerEnd = False
# initial minimal height of the editor
self.minHeight = 200
# storage dict, to prevent recalculating to much
self.cairoStorage = {
'features': None, # feature Object
'fPaths': [], # path of alls features as List
'cursorPath': None,
'cursor': None,
'enzymes': {}, # enzymes object
'ePaths': [], # enzymes drawn
'ticks': None, # ticks object --> self.dna
'tPaths': [] # ticks drawn
}
# call window
DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY)
# bind events
self.Bind(wx.EVT_LEFT_DCLICK, self.OnLeftDouble)
self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown)
self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp)
self.Bind(wx.EVT_MOTION,
self.OnMotion) # drag and drop, selection etc.
self.Bind(
wx.EVT_KEY_DOWN, self.OnKeyPress
) #This is important for controlling the input into the editor
def __init__(self, parent, id):
#parent
self.parent = parent
# get data
self.dna = genbank.gb.GetDNA()
self.cdna = genbank.gb.GetDNA()
# settings for the editor
self.sY = 60 # offset top
self.dX = 8 # border left and right
self.textSpacing = 80 # seperation of lines
self.fontsize = 9 # line size
self.lineGap = 6
# interactive cursor
self.PositionPointer = 1
self.PositionPointerEnd = False
# initial minimal height of the editor
self.minHeight = 200
# storage dict, to prevent recalculating to much
self.cairoStorage = {
'features' : None, # feature Object
'fPaths' : [], # path of alls features as List
'cursorPath': None,
'cursor' : None,
'enzymes' : {}, # enzymes object
'ePaths' : [], # enzymes drawn
'ticks' : None, # ticks object --> self.dna
'tPaths' : [] # ticks drawn
}
# call window
DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY)
# bind events
self.Bind(wx.EVT_LEFT_DCLICK, self.OnLeftDouble)
self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown)
self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp)
self.Bind(wx.EVT_MOTION, self.OnMotion) # drag and drop, selection etc.
self.Bind(wx.EVT_KEY_DOWN, self.OnKeyPress) #This is important for controlling the input into the editor
def __init__(self, parent, id): self.highlighted = False #a variable for keeping track of whether any object is highlighted self.codon = False self.target = [] self.possible = [] self.offtarget = [] DNApyBaseDrawingClass.__init__(self, parent, wx.ID_ANY) self.xc = 0 self.yc = 0 self.highlighted = False #variable for keeping track of whether an amino acid is highlighted # self.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown) self.Bind(wx.EVT_LEFT_UP, self.OnLeftUp) # self.Bind(wx.EVT_RIGHT_UP, self.OnRightUp) self.Bind(wx.EVT_MOTION, self.OnMotion)
