def time_concatenate(self):
if Suite.style == 'numpy':
for _ in xrange(Suite.T):
Suite.r = numpy.concatenate(Suite.a, 0)
elif Suite.style == 'concat':
for _ in xrange(Suite.T):
Suite.r = concat(Suite.a)
elif Suite.style == 'bcolz':
for _ in xrange(Suite.T):
Suite.r = append(Suite.a, Suite.clevel)
def test_numpy():
enter()
t = np.fromiter((mv + np.random.rand(NC) - mv for i in xrange(int(NR))),
dtype=dt)
after_create()
out = np.fromiter(((row['f1'], row['f3']) for row in t[eval(nquery)]),
dtype="f8,f8")
after_query()
return out
def test_numpy():
enter()
t = np.fromiter((mv + np.random.rand(NC) - mv for i in xrange(int(NR))),
dtype=dt)
after_create()
out = np.fromiter(((row['f1'], row['f3']) for row in t[eval(nquery)]),
dtype="f8,f8")
after_query()
return out
def test02(self):
"""Testing `fetchwhere` method with a `outcols` with 1 field"""
N = self.N
ra = np.fromiter(((i, i, i * 3) for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
ct = t.fetchwhere('f1 < f2', outcols=('f1',))
self.assertEqual(ct.names, ['f1'])
l, s = len(ct), ct['f1'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test00(self):
"""Testing `fetchwhere` method with only an expression"""
N = self.N
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
ct = t.fetchwhere('f1 < f2')
l, s = len(ct), ct['f0'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test04(self):
"""Testing `fetchwhere` method with an `out_flavor` parameter"""
N = self.N
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
ct = t.fetchwhere('f1 < f2', out_flavor="numpy")
self.assertEqual(type(ct), np.ndarray)
l, s = len(ct), ct['f0'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test03(self):
"""Testing `fetchwhere` method with a `limit`, `skip` parameter"""
N, M = self.N, 101
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
ct = t.fetchwhere('f1 < f2', limit=N - M - 2, skip=M)
l, s = len(ct), ct['f0'].sum()
self.assertEqual(l, N - M - 2)
self.assertEqual(s, np.arange(M + 1, N - 1).sum())
def test05(self):
"""Testing `fetchwhere` method with global and local variables"""
N = self.N
lvar = GVAR
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
ct = t.fetchwhere('(f1 + lvar) < (f2 + GVAR)', out_flavor="numpy")
self.assertEqual(type(ct), np.ndarray)
l, s = len(ct), ct['f0'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test00(self):
"""Testing `whereblocks` method with only an expression"""
N = self.N
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2'):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test03(self):
"""Testing `whereblocks` method with a `outfields` with 1 field"""
N = self.N
ra = np.fromiter(((i, i, i * 3) for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2', outfields=('f1', )):
self.assertEqual(block.dtype.names, ('f1', ))
l += len(block)
s += block['f1'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test07(self):
"""Testing `whereblocks` method with a `limit`, `skip` parameter"""
N, M = self.N, 101
ra = np.fromiter(((i, i * 2., i * 3) for i in xrange(N)),
dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2', limit=N - M - 2, skip=M):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, N - M - 2)
self.assertEqual(s, np.arange(M + 1, N - 1).sum())
def test05(self):
"""Testing `whereblocks` method with a `limit` parameter"""
N, M = self.N, 101
ra = np.fromiter(((i, i * 2., i * 3) for i in xrange(N)),
dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2', limit=M):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, M)
self.assertEqual(s, M * ((M + 1) / 2)) # Gauss summation formula
def test00(self):
"""Testing `whereblocks` method with only an expression"""
N = self.N
ra = np.fromiter(((i, i * 2., i * 3) for i in xrange(N)),
dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2'):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test05(self):
"""Testing `whereblocks` method with a `limit` parameter"""
N, M = self.N, 101
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2', limit=M):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, M)
self.assertEqual(s, M * ((M + 1) / 2)) # Gauss summation formula
def test07(self):
"""Testing `whereblocks` method with a `limit`, `skip` parameter"""
N, M = self.N, 101
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2', limit=N - M - 2, skip=M):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, N - M - 2)
self.assertEqual(s, np.arange(M + 1, N - 1).sum())
def test03(self):
"""Testing `whereblocks` method with a `outfields` with 1 field"""
N = self.N
ra = np.fromiter(((i, i, i * 3) for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f1 < f2', outfields=('f1',)):
self.assertEqual(block.dtype.names, ('f1',))
l += len(block)
s += block['f1'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test_ctable(clevel):
enter()
tc = bcolz.fromiter(
(mv + np.random.rand(NC) - mv for i in xrange(int(NR))),
dtype=dt,
cparams=bcolz.cparams(clevel, cname=cname),
count=int(NR))
after_create()
out = np.fromiter((row for row in tc.where(squery, 'f1,f3')),
dtype="f8,f8")
after_query()
return out
def test08(self):
"""Testing `whereblocks` method with global and local variables"""
N = self.N
lvar = GVAR
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('(f1 + lvar) < (f2 + GVAR)'):
l += len(block)
s += block['f0'].sum()
self.assertEqual(l, N - 1)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test_ctable(clevel):
enter()
tc = bcolz.fromiter(
(mv + np.random.rand(NC) - mv for i in xrange(int(NR))),
dtype=dt,
cparams=bcolz.cparams(clevel, cname=cname),
count=int(NR))
after_create()
out = np.fromiter((row for row in tc.where(squery, 'f1,f3')),
dtype="f8,f8")
after_query()
return out
def test_numexpr():
import numexpr as ne
enter()
t = np.fromiter((mv + np.random.rand(NC) - mv for i in xrange(int(NR))),
dtype=dt)
after_create()
map_field = dict(("f%s" % i, t["f%s" % i]) for i in range(NC))
out = np.fromiter(
((row['f1'], row['f3']) for row in t[ne.evaluate(squery, map_field)]),
dtype="f8,f8")
after_query()
return out
def test_numexpr():
import numexpr as ne
enter()
t = np.fromiter((mv + np.random.rand(NC) - mv for i in xrange(int(NR))),
dtype=dt)
after_create()
map_field = dict(("f%s" % i, t["f%s" % i]) for i in range(NC))
out = np.fromiter(((row['f1'], row['f3']) for row in
t[ne.evaluate(squery, map_field)]),
dtype="f8,f8")
after_query()
return out
def test01(self):
"""Testing `whereblocks` method with a `blen`"""
N = self.N
ra = np.fromiter(((i, i * 2., i * 3)
for i in xrange(N)), dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f0 <= f1', blen=100):
l += len(block)
# All blocks should be of length 100, except the last one,
# which should be 0 or 20
self.assertTrue(len(block) in (0, 20, 100))
s += block['f0'].sum()
self.assertEqual(l, N)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test01(self):
"""Testing `whereblocks` method with a `blen`"""
N = self.N
ra = np.fromiter(((i, i * 2., i * 3) for i in xrange(N)),
dtype='i4,f8,i8')
t = bcolz.ctable(ra)
l, s = 0, 0
for block in t.whereblocks('f0 <= f1', blen=100):
l += len(block)
# All blocks should be of length 100, except the last one,
# which should be 0 or 20
self.assertTrue(len(block) in (0, 20, 100))
s += block['f0'].sum()
self.assertEqual(l, N)
self.assertEqual(s, (N - 1) * (N / 2)) # Gauss summation formula
def test_sqlite():
enter()
sqlquery = "(f2>.9) and ((f8>.3) and (f8<.4))" # the query
con = sqlite3.connect(":memory:")
# Create table
fields = "(%s)" % ",".join(["f%d real" % i for i in range(NC)])
con.execute("create table bench %s" % fields)
# Insert a NR rows of data
vals = "(%s)" % ",".join(["?" for i in range(NC)])
with con:
con.executemany("insert into bench values %s" % vals,
(mv + np.random.rand(NC) - mv
for i in xrange(int(NR))))
after_create()
out = np.fromiter(
(row for row in con.execute("select f1, f3 from bench where %s" %
sqlquery)),
dtype="f8,f8")
after_query("non-indexed")
# Create indexes
con.execute("CREATE INDEX f1idx ON bench (f1)")
con.execute("CREATE INDEX f2idx ON bench (f8)")
after_create("index")
out = np.fromiter(
(row for row in con.execute("select f1, f3 from bench where %s" %
sqlquery)),
dtype="f8,f8")
after_query("indexed")
return out
def test_sqlite():
enter()
sqlquery = "(f2>.9) and ((f8>.3) and (f8<.4))" # the query
con = sqlite3.connect(":memory:")
# Create table
fields = "(%s)" % ",".join(["f%d real" % i for i in range(NC)])
con.execute("create table bench %s" % fields)
# Insert a NR rows of data
vals = "(%s)" % ",".join(["?" for i in range(NC)])
with con:
con.executemany("insert into bench values %s" % vals,
(mv + np.random.rand(NC) - mv for i in
xrange(int(NR))))
after_create()
out = np.fromiter(
(row for row in con.execute(
"select f1, f3 from bench where %s" % sqlquery)),
dtype="f8,f8")
after_query("non-indexed")
# Create indexes
con.execute("CREATE INDEX f1idx ON bench (f1)")
con.execute("CREATE INDEX f2idx ON bench (f8)")
after_create("index")
out = np.fromiter(
(row for row in con.execute(
"select f1, f3 from bench where %s" % sqlquery)),
dtype="f8,f8")
after_query("indexed")
return out
def _eval_blocks(expression, vars, vlen, typesize, vm, out_flavor, blen,
**kwargs):
"""Perform the evaluation in blocks."""
if not blen:
# Compute the optimal block size (in elements)
# The next is based on experiments with bench/ctable-query.py
# and the 'movielens-bench' repository
if vm == "numexpr":
bsize = 2**23
elif vm == "dask":
bsize = 2**25
else: # python
bsize = 2**21
blen = int(bsize / typesize)
# Protection against too large atomsizes
if blen == 0:
blen = 1
if vm == "dask":
if 'da' in vars:
raise NameError("'da' is reserved as a prefix for dask.array. "
"Please use another prefix")
for name in vars:
var = vars[name]
if is_sequence_like(var):
vars[name] = da.from_array(var,
chunks=(blen, ) + var.shape[1:])
# Build the expression graph
vars['da'] = da
da_expr = _eval(expression, vars)
if out_flavor in ("bcolz", "carray") and da_expr.shape:
result = bcolz.zeros(da_expr.shape, da_expr.dtype, **kwargs)
# Store while compute expression graph
da.store(da_expr, result)
return result
else:
# Store while compute
return np.array(da_expr)
# Check whether we have a re_evaluate() function in numexpr
re_evaluate = bcolz.numexpr_here and hasattr(bcolz.numexpr, "re_evaluate")
vars_ = {}
# Get containers for vars
maxndims = 0
for name in vars:
var = vars[name]
if is_sequence_like(var):
ndims = len(var.shape) + len(var.dtype.shape)
if ndims > maxndims:
maxndims = ndims
if len(var) > blen and hasattr(var, "_getrange"):
shape = (blen, ) + var.shape[1:]
vars_[name] = np.empty(shape, dtype=var.dtype)
for i in xrange(0, vlen, blen):
# Fill buffers for vars
for name in vars:
var = vars[name]
if is_sequence_like(var) and len(var) > blen:
if hasattr(var, "_getrange"):
if i + blen < vlen:
var._getrange(i, blen, vars_[name])
else:
vars_[name] = var[i:]
else:
vars_[name] = var[i:i + blen]
else:
if hasattr(var, "__getitem__"):
vars_[name] = var[:]
else:
vars_[name] = var
# Perform the evaluation for this block
if vm == "python":
res_block = _eval(expression, vars_)
else:
if i == 0 or not re_evaluate:
try:
res_block = bcolz.numexpr.evaluate(expression,
local_dict=vars_)
except ValueError:
# numexpr cannot handle this, so fall back to "python" vm
warnings.warn(
"numexpr cannot handle this expression: falling back "
"to the 'python' virtual machine. You can choose "
"another virtual machine by using the `vm` parameter.")
return _eval_blocks(expression, vars, vlen, typesize,
"python", out_flavor, blen, **kwargs)
else:
res_block = bcolz.numexpr.re_evaluate(local_dict=vars_)
if i == 0:
# Detection of reduction operations
scalar = False
dim_reduction = False
if len(res_block.shape) == 0:
scalar = True
result = res_block
continue
elif len(res_block.shape) < maxndims:
dim_reduction = True
result = res_block
continue
# Get a decent default for expectedlen
if out_flavor in ("bcolz", "carray"):
nrows = kwargs.pop('expectedlen', vlen)
result = bcolz.carray(res_block, expectedlen=nrows, **kwargs)
else:
out_shape = list(res_block.shape)
out_shape[0] = vlen
result = np.empty(out_shape, dtype=res_block.dtype)
result[:blen] = res_block
else:
if scalar or dim_reduction:
result += res_block
elif out_flavor in ("bcolz", "carray"):
result.append(res_block)
else:
result[i:i + blen] = res_block
if isinstance(result, bcolz.carray):
result.flush()
if scalar:
return result[()]
return result
cparams = bcolz.cparams(clevel)
# x = np.arange(N)
x = np.zeros(N, dtype="f8")
y = x.copy()
z = x.copy()
cx = bcolz.carray(x, cparams=cparams)
cy = cx.copy()
cz = cx.copy()
ct = bcolz.ctable((cx, cy, cz), names=['x', 'y', 'z'])
t = ct[:]
print("Starting benchmark now for getting %d elements..." % M)
# Retrieve from a ndarray
t0 = time()
vals = [x[i] for i in xrange(0, M, 3)]
print("Time for array--> %.3f" % (time() - t0,))
print("vals-->", len(vals))
#bcolz.set_num_threads(bcolz.ncores//2)
# Retrieve from a carray
t0 = time()
cvals = [cx[i] for i in xrange(0, M, 3)]
#cvals = cx[:M:3][:].tolist()
print("Time for carray--> %.3f" % (time() - t0,))
print("vals-->", len(cvals))
assert vals == cvals
# Retrieve from a structured ndarray
t0 = time()
if len(sys.argv) == 2:
N, K, T, clevel = (1000000, 10, 3, 1)
else:
N, K, T = [int(arg) for arg in sys.argv[2:5]]
if len(sys.argv) > 5:
clevel = int(sys.argv[5])
else:
clevel = 0
# The next datasets allow for very high compression ratios
a = [numpy.arange(N, dtype='f8') for _ in range(K)]
print("problem size: (%d) x %d = 10^%g" % (N, K, math.log10(N * K)))
t = time.time()
if style == 'numpy':
for _ in xrange(T):
r = numpy.concatenate(a, 0)
elif style == 'concat':
for _ in xrange(T):
r = concat(a)
elif style == 'bcolz':
for _ in xrange(T):
r = append(a, clevel)
t = time.time() - t
print('time for concat: %.3fs' % (t / T))
if style == 'bcolz':
size = r.cbytes
else:
size = r.size * r.dtype.itemsize
def _eval_blocks(expression, vars, vlen, typesize, vm, out_flavor, blen,
**kwargs):
"""Perform the evaluation in blocks."""
if not blen:
# Compute the optimal block size (in elements)
# The next is based on experiments with bench/ctable-query.py
# and the 'movielens-bench' repository
if vm == "numexpr":
bsize = 2**23
elif vm == "dask":
bsize = 2**25
else: # python
bsize = 2**21
blen = int(bsize / typesize)
# Protection against too large atomsizes
if blen == 0:
blen = 1
if vm == "dask":
if 'da' in vars:
raise NameError(
"'da' is reserved as a prefix for dask.array. "
"Please use another prefix")
for name in vars:
var = vars[name]
if is_sequence_like(var):
vars[name] = da.from_array(var, chunks=(blen,) + var.shape[1:])
# Build the expression graph
vars['da'] = da
da_expr = _eval(expression, vars)
if out_flavor in ("bcolz", "carray") and da_expr.shape:
result = bcolz.zeros(da_expr.shape, da_expr.dtype, **kwargs)
# Store while compute expression graph
da.store(da_expr, result)
return result
else:
# Store while compute
return np.array(da_expr)
# Check whether we have a re_evaluate() function in numexpr
re_evaluate = bcolz.numexpr_here and hasattr(bcolz.numexpr, "re_evaluate")
vars_ = {}
# Get containers for vars
maxndims = 0
for name in vars:
var = vars[name]
if is_sequence_like(var):
ndims = len(var.shape) + len(var.dtype.shape)
if ndims > maxndims:
maxndims = ndims
if len(var) > blen and hasattr(var, "_getrange"):
shape = (blen, ) + var.shape[1:]
vars_[name] = np.empty(shape, dtype=var.dtype)
for i in xrange(0, vlen, blen):
# Fill buffers for vars
for name in vars:
var = vars[name]
if is_sequence_like(var) and len(var) > blen:
if hasattr(var, "_getrange"):
if i+blen < vlen:
var._getrange(i, blen, vars_[name])
else:
vars_[name] = var[i:]
else:
vars_[name] = var[i:i+blen]
else:
if hasattr(var, "__getitem__"):
vars_[name] = var[:]
else:
vars_[name] = var
# Perform the evaluation for this block
if vm == "python":
res_block = _eval(expression, vars_)
else:
if i == 0 or not re_evaluate:
try:
res_block = bcolz.numexpr.evaluate(expression,
local_dict=vars_)
except ValueError:
# numexpr cannot handle this, so fall back to "python" vm
warnings.warn(
"numexpr cannot handle this expression: falling back "
"to the 'python' virtual machine. You can choose "
"another virtual machine by using the `vm` parameter.")
return _eval_blocks(
expression, vars, vlen, typesize, "python",
out_flavor, blen, **kwargs)
else:
res_block = bcolz.numexpr.re_evaluate(local_dict=vars_)
if i == 0:
# Detection of reduction operations
scalar = False
dim_reduction = False
if len(res_block.shape) == 0:
scalar = True
result = res_block
continue
elif len(res_block.shape) < maxndims:
dim_reduction = True
result = res_block
continue
# Get a decent default for expectedlen
if out_flavor in ("bcolz", "carray"):
nrows = kwargs.pop('expectedlen', vlen)
result = bcolz.carray(res_block, expectedlen=nrows, **kwargs)
else:
out_shape = list(res_block.shape)
out_shape[0] = vlen
result = np.empty(out_shape, dtype=res_block.dtype)
result[:blen] = res_block
else:
if scalar or dim_reduction:
result += res_block
elif out_flavor in ("bcolz", "carray"):
result.append(res_block)
else:
result[i:i+blen] = res_block
if isinstance(result, bcolz.carray):
result.flush()
if scalar:
return result[()]
return result
def _eval_blocks(expression, vars, vlen, typesize, vm, out_flavor,
**kwargs):
"""Perform the evaluation in blocks."""
# Compute the optimal block size (in elements)
# The next is based on experiments with bench/ctable-query.py
# and the 'movielens-bench' repository
if vm == "numexpr":
bsize = 2**24
else:
bsize = 2**22
bsize //= typesize
# Evaluation seems more efficient if block size is a power of 2
bsize = 2 ** (int(math.log(bsize, 2)))
if vlen < 100*1000:
bsize //= 8
elif vlen < 1000*1000:
bsize //= 4
elif vlen < 10*1000*1000:
bsize //= 2
# Protection against too large atomsizes
if bsize == 0:
bsize = 1
vars_ = {}
# Get temporaries for vars
maxndims = 0
for name in vars:
var = vars[name]
if hasattr(var, "__len__"):
ndims = len(var.shape) + len(var.dtype.shape)
if ndims > maxndims:
maxndims = ndims
if len(var) > bsize and hasattr(var, "_getrange"):
vars_[name] = np.empty(bsize, dtype=var.dtype)
for i in xrange(0, vlen, bsize):
# Get buffers for vars
for name in vars:
var = vars[name]
if hasattr(var, "__len__") and len(var) > bsize:
if hasattr(var, "_getrange"):
if i+bsize < vlen:
var._getrange(i, bsize, vars_[name])
else:
vars_[name] = var[i:]
else:
vars_[name] = var[i:i+bsize]
else:
if hasattr(var, "__getitem__"):
vars_[name] = var[:]
else:
vars_[name] = var
# Perform the evaluation for this block
if vm == "python":
res_block = _eval(expression, vars_)
else:
try:
res_block = bcolz.numexpr.evaluate(expression,
local_dict=vars_)
except ValueError:
# numexpr cannot handle this. Fall back to a pure "python" VM.
return _eval_blocks(
expression, vars, vlen, typesize, "python",
out_flavor, **kwargs)
if i == 0:
# Detection of reduction operations
scalar = False
dim_reduction = False
if len(res_block.shape) == 0:
scalar = True
result = res_block
continue
elif len(res_block.shape) < maxndims:
dim_reduction = True
result = res_block
continue
# Get a decent default for expectedlen
if out_flavor == "carray":
nrows = kwargs.pop('expectedlen', vlen)
result = bcolz.carray(res_block, expectedlen=nrows, **kwargs)
else:
out_shape = list(res_block.shape)
out_shape[0] = vlen
result = np.empty(out_shape, dtype=res_block.dtype)
result[:bsize] = res_block
else:
if scalar or dim_reduction:
result += res_block
elif out_flavor == "carray":
result.append(res_block)
else:
result[i:i+bsize] = res_block
if isinstance(result, bcolz.carray):
result.flush()
if scalar:
return result[()]
return result
from time import time
import numpy as np
from numpy.testing import assert_array_equal
import bcolz
from bcolz.py2help import xrange, izip
N = int(1e6) # the number of elements in x
clevel = 2 # the compression level
print("Creating inputs with %d elements..." % N)
x = xrange(N) # not a true iterable, but can be converted
y = xrange(1, N + 1)
z = xrange(2, N + 2)
print("Starting benchmark now for creating arrays...")
# Create a ndarray
# x = (i for i in xrange(N)) # true iterable
t0 = time()
out = np.fromiter(x, dtype='f8', count=N)
print("Time for array--> %.3f" % (time() - t0,))
print("out-->", len(out))
#bcolz.set_num_threads(bcolz.ncores//2)
# Create a carray
#x = (i for i in xrange(N)) # true iterable
# Benchmark for assessing the `fromiter()` speed.
from time import time
import numpy as np
from numpy.testing import assert_array_equal
import bcolz
from bcolz.py2help import xrange, izip
N = int(1e6) # the number of elements in x
clevel = 2 # the compression level
print("Creating inputs with %d elements..." % N)
x = xrange(N) # not a true iterable, but can be converted
y = xrange(1, N + 1)
z = xrange(2, N + 2)
print("Starting benchmark now for creating arrays...")
# Create a ndarray
# x = (i for i in xrange(N)) # true iterable
t0 = time()
out = np.fromiter(x, dtype='f8', count=N)
print("Time for array--> %.3f" % (time() - t0, ))
print("out-->", len(out))
#bcolz.set_num_threads(bcolz.ncores//2)
# Create a carray
#x = (i for i in xrange(N)) # true iterable